| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 4,013,589 | G→A | 10.6% | noncoding (346/385 nt) | PP_mr44 → | CrcZ ncRNA |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 4,013,589 | 0 | G | A | 10.6% | 123.3 / 4.9 | 47 | noncoding (346/385 nt) | PP_mr44 | CrcZ ncRNA |
| Reads supporting (aligned to +/- strand): ref base G (19/23); new base A (2/3); total (21/26) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 2.31e-01 | |||||||||||
GCAGGTCAGCGCTCAAAAAAATACGTTTGCTCTTGACCCCGCCTGGGGGTCGCCCGCAACACCAGGACAAGCCGACAAAAACAACAATAGGCCGGTCCCAATAATAA‑AAAAAGAGCAGGCAACAACGCTTTGAGGGGAGCTTCGGCTCCCCTCAGTGCTTCCTGCCCTCTTCCTCCTTCTGCTTCTCCTCATCCTGCCCTTCGACCTTCTCCACCAGCAACGGCATCGTGCCCAGTACCAGCAGGGCCAGTACCGTGCTGATCAGCGCCGTGGCTTCGCGCCCCATGCCAGC > NC_002947/4013446‑4013737 | gCAGGTCAGCGCTCAAAAAAATACGTTTGCTCTTGACCCCGCCTGGGGGTCGCCCGCAACACCAGGACAAGCCGACAAAAACAACAATAGGCCGGTCCCAATAATAA‑AAAAAGAGCAGGCAACAACGCTTTGAGGGGAGCTTCGGCTcc < 1:183126/149‑1 (MQ=255)gCAGGTCAGCGCTCAAAAAAATACGTTTGCTCTTGACCCCGCCTGGGGGTCGCCCGCAACACCAGGACAAGCCGACAAAAACAACAATAGGCCGGTCCCAATAATAA‑AAAAAGAGCAGGCAACAACGCTTTGAGGGGAGCTTCGGCTcc < 2:105284/149‑1 (MQ=255) caggccTCAAAAAAATACCTTTGCTCCTGACCCCGCCGGGGGGGCGCCCGCAACACCATGCCCACCCCCCAAAAACAACAAAAGGCCGGGCCCAAAAATAACAAAAAGAGCAGGCAACAACGCTTTGAGGGGAGCCGAAGCTCCCCTCa < 1:76879/144‑1 (MQ=255) gcgcTCAAAAAAATACGTTTGCTCTTGACCCCGCCTGGGGGTCGCCCGCAACACCAGGACAAGCCGACAAAAACAACAATAGGCCGGTCCCAATAATAA‑AAAAAGAGCAGGCAACAACGCTTTGAGGGGAGCTTCGGCTCCCCTCAGTg < 6:36562/149‑1 (MQ=255) aaaaaaaTACGTTTGCTCTTGACCCCGCCTGGGGGTCGCCCGCAACACCAGGACAAGCCGACAAAAACAACAATAGGCCGGTCCCAATAATAA‑AAAAAGAGCAGGCAACAACGCTTTGAGGGGAGCTTCGGCTCCCCTCAGTGCTTCCt > 4:149674/1‑149 (MQ=255) aaaaaaaTACGTTTGCTCTTGACCCCGCCTGGGGGTCGCCCGCAACACCAGGACAAGCCGACAAAAACAACAATAGGCCGGTCCCAATAATAA‑AAAAAGAGCAGGCAACAACGCTTTGAGGGGAGCTTCGGCTCCCCTCAGTGCTTCCt > 2:673/1‑149 (MQ=255) tttGCTCTTGACCCCGCCTGGGGGTCGCCCGCAACACCAGGACAAGCCGACAAAAACAACAATAGGCCGGTCCCAATAATAA‑AAAAAGAGCAGGCAACAACGCTTTGAGGGGAGCTTCGGCTCCCCTCAg > 3:92295/1‑130 (MQ=255) tttGCTCTTGACCCCGCCTGGGGGTCGCCCGCAACACCAGGACAAGCCGACAAAAACAACAATAGGCCGGTCCCAATAATAA‑AAAAAGAGCAGGCAACAACGCTTTGAGGGGAGCTTCGGCTCCCCTCAg < 4:92295/130‑1 (MQ=255) ctctTGACCCCGCCTGGGGGTCGCCCGCAACACCAGGACAAGCCGACAAAAACAACAATAGGCCGGTCCCAATAATAA‑AAAAAGAGCAGGCAACAACGCTTTGAGGGGAGCTTCGGCTCCCCTCAGTGCTTCCAGCCCTCTTcctcct > 3:22970/1‑148 (MQ=255) tctTGACCCCGCCTGGGGGTCGCCCGCAACACCAGGACAAGCCGACAAAAACAACAATAGGCCGGTCCCAATAATAA‑AAAAAGAGCAGGCAACAACGCTTTGAGGGGAGCTTCGGCTCCCCTCAGTGCTTCCTGCCCTCTTCCTCCTTc < 4:322089/149‑1 (MQ=255) ctTGACCCCGCCTGGGGGTCGCCCGCAACACCAGGACAAGCCGACAAAAACAACAATAGGCCGGTCCCAATAATAA‑AAAAAGAGCAGGCAACAACGCTTTGAGGGGAGCTTCGGCTCCCCTCAGTGCTTCCTGCCCTCTTCCTCCTTc < 4:22970/148‑1 (MQ=255) ctTGACCCCGCCTGGGGGTCGCCCGCAACACCAGGACAAGCCGACAAAAACAACAATAGGCCGGTCCCAATAATAA‑AAAAAGAGCAGGCAACAACGCTTTGAGGGGAGCTGCGGCTCCCCTCAGGGCTTCCTGCCCTCTTCCGCCTTCt > 7:281027/1‑149 (MQ=255) ttGACCCCGCCTGGGGGTCGCCCGCAACACCAGGACAAGCCGACAAAAACAACAATAGGCCGGTCCCAATAATAA‑AAAACGAGCAGGCAACAACGCTTTGAGGGGAGCTTCGGCTCCCCTCAGTGCTTCCTGCCCTCTTCCTCCTTc < 7:132068/147‑1 (MQ=255) gACCCCGCCTGGGGGTCGCCCGCAACACCAGGACAAGCCGACAAAAACAACAATAGGCCGGTCCCAATAATAA‑AAAAAGAGCAGGCAACACCGCTTTGAGGGGAGCTTCGGCTCCCCTCAGTGCTTCCTGCCCTCTTCCTCCTTCTg < 5:73322/147‑1 (MQ=255) ccccGCCTGGGGGTCGCCCGCAACACCAGGACAAGTCGACAAAAACAACAATAGGCCGGTCCCAATAATAA‑AAAAAGAGCAGGCAACAACGCTTTGAGGGGAGCTTCGGCTCCCCTCAGTGCTTc > 6:293133/1‑125 (MQ=255) ccccGCCTGGGGGTCGCCCGCAACACCAGGACAAGTCGACAAAAACAACAATAGGCCGGTCCCAATAATAA‑AAAAAGAGCAGGCAACAACGCTTTGAGGGGAGCTTCGGCTCCCCTCAGTGCTTc < 5:293133/125‑1 (MQ=255) cccGCCTGGGGGTCGCCCGCAACACCAGGACAAGCCGACAAAAACAACAATAGGCCGGTCCCAATAATAA‑AAAAAGAGCAGGCAACAACGCTTTGAGGGGAGCTTCGGCTCCCCTCa > 6:93321/1‑117 (MQ=255) cccGCCTGGGGGTCGCCCGCAACACCAGGACAAGCCGACAAAAACAACAATAGGCCGGTCCCAATAATAA‑AAAAAGAGCAGGCAACAACGCTTTGAGGGGAGCTTCGGCTCCCCTCa < 5:93321/117‑1 (MQ=255) ccGCCTGGGGGTCGCCCGCAACACCAGGACAAGCCGACAAAAACAACAATAGGCCGGTCCCAATAATAA‑AAAAAGAGCAGGCAACAACGCTTTGAGGGGAGCTTCGGCTCCCCTCAGTGCTTCCTGCCCTCTTCCTCCTTCTGCTtctc < 5:65984/149‑1 (MQ=255) ggTCGCCCGCAACACCAGGACAAGCCGACAAAAACAACAATAGGCCGGTCCCAATAATAA‑AAAAAGAGCAGGCAACAACGCTTTGAGGGGAGCTTCGGCTCCCCTCAGTGCTTCCTGCCCTCTTCCTCCTTCTGCTTCTCCTCATCCTg < 1:207744/149‑1 (MQ=255) tCGCCCGCAACACCAGGACAAGCCGACAAAAACAACAATAGGCCGGTCCCAATAATAA‑AAAAAGAGCAGGCAACAACGCTTTGAGGGGAGCTTCGGCTCCCCTCAGTGCTTCCTGCCCTCTTCCTCCTTCTGCTTCTCCTCATc > 8:31742/1‑144 (MQ=255) tCGCCCGCAACACCAGGACAAGCCGACAAAAACAACAATAGGCCGGTCCCAATAATAA‑AAAAAGAGCAGGCAACAACGCTTTGAGGGGAGCTTCGGCTCCCCTCAGTGCTTCCTGCCCTCTTCCTCCTTCTGCTTCTCCTCATc < 7:31742/144‑1 (MQ=255) ccGCAACACCAGGACAAGCCGACAAAAACAACAATAGGCCGGTCCCAATAATAA‑AAAAAGAGCAGGCAACAACGCTTTGAGGGGAGCTTCGGCTCCCCTCAGTGCTTCCTGCCCTCTTCCTCCTTCTGCTTCTCCTCATCCTGCCCTTc > 6:340560/1‑149 (MQ=255) ggACAAGCCGACAAAAACAACAATAGGCCGGTCCCAATAATAA‑AAAAAGAGCAGGCAACAACGCTTTGAGGGGAGCTTCGGCTCCCCTCAGTGCTTCCTGCCCTCTTCCTCCTTCTGCTTCTCCTCATCCTGCCCTTCGACCTTCTcca > 1:60972/1‑149 (MQ=255) cAAGCCGACAAAAACAACAATAGGCCGGTCCCAATAATAA‑AAAAAGAGCAGGCAACAACGCTTTGAGGGGAGCTTCGGCTCCCCTCAGTGCTTCCTGCCCTCTTCCTCCTTCTGCTTCTCCTCATCCTGCCCTTCGACCTTCTccacca < 5:340560/149‑1 (MQ=255) aCAAAAACAACAATAGGCCGGTCCCAATAATAA‑AAAAAGAGCAGGCAACAACGCTTTGAGGGGAGCTTCGGCTCCCCTCAGTGCTTCCTGCCCTCTTCCTCCTTCTGCTTCTCCTGATCCTGCCCGTCGCCCGTCTGCCGCAGCCACgg > 8:253418/1‑149 (MQ=255) aaaCAACAATAGGCCGGTCCCAATAATAA‑AAAAAGAGCAGGCAACAACGCTTTGAGGGGAGCTTCGGCTCCCCTCAGTGCTTCCTGCCCTCTTCCTCCTTCTGCTTCTCCTCATCCTGCCCTTCGACCTTCTCCACCAGCAACGGCATc < 7:253418/149‑1 (MQ=255) aacaacAATAGGCCGGTCCCAATAATAA‑AAAAAGAGCAGGCAACAACGCTTTGAGGGGAGCCGAAGCTCCCCTc < 4:77531/74‑1 (MQ=38) aacaacAATAGGCCGGTCCCAATAATAA‑AAAAAGAGCAGGCAACAACGCTTTGAGGGGAGCCGAAGCTCCCCTc > 3:77531/1‑74 (MQ=38) acaacaATAGGCCGGTCCCAATAATAA‑AAAAAGAGCAGGCAACAACGCTTTGAGGGGAGCTTCGGCTCCCCTCAGTGCTTCCTGCCCTCTTCCTCCTTCTGCTTCTCCTCATCCTGCCCTTCGACCTtc > 6:151363/1‑129 (MQ=255) acaacaATAGGCCGGTCCCAATAATAA‑AAAAAGAGCAGGCAACAACGCTTTGAGGGGAGCTTCGGCTCCCCTCAGTGCTTCCTGCCCTCTTCCTCCTTCTGCTTCTCCTCATCCTGCCCTTCGACCTtc < 5:151363/129‑1 (MQ=255) aacaaTAGGCCGGTCCCAATAATAA‑AAAAAGAGCAGGCAACAACGCTTTGAGGGGAGCTTCGGCTCCCCTCAGTGATTCCTGCCCTCTTCCTCCTTCTGCTTCTCCTCATCCTGCCCTTCGACCTTATCCACCAGCAACGGCATCGTGc > 7:284351/1‑149 (MQ=255) gCCGGTCCCAATAATAA‑AAAAAGAGCAGGCAACAACGCTTTGAGGGGAGCTTCGGCTCCCCTCAGTGCTTCCTGCCCTCTTCCTCCTTCTGCTTCTCCTCATCCTGCCCTTCGACCTTCTCCACCAGCAACGGCATCGTGcc < 8:271291/142‑1 (MQ=255) gCCGGTCCCAATAATAA‑AAAAAGAGCAGGCAACAACGCTTTGAGGGGAGCTTCGGCTCCCCTCAGTGCTTCCTGCCCTCTTCCTCCTTCTGCTTCTCCTCATCCTGCCCTTCGACCTTCTCCACCAGCAACGGCATCGTGcc > 7:271291/1‑142 (MQ=255) ccAATAATAA‑AAAAAGAGCAGGCAACAACGCTTTGAGGGGAGCTTCGGCTCCCCTCAGTGCTTCCTGCCCTCTTCCTCCTTCTGCTTCTCCTCATCCTGCCCTTc < 1:167681/105‑1 (MQ=255) ccAATAATAA‑AAAAAGAGCAGGCAACAACGCTTTGAGGGGAGCTTCGGCTCCCCTCAGTGCTTCCTGCCCTCTTCCTCCTTCTGCTTCTCCTCATCCTGCCCTTc > 2:167681/1‑105 (MQ=255) cAATAATAA‑AAAAAGAGCAGGCAACAACGCTTTGAGGGGAGCTTCGGCTCCCCTCAGTGCTTCCTGCCCTCTTCCTCCTTCTGCTTCTCCTCATCCTGCCCTTCGACCTTCTCCACCAGCAACGGCATCGTGCCCAGTACCAGCAGGGc < 1:673/149‑1 (MQ=255) aataatAA‑AAAAAGAGCAGGCAACAACGCTTTGAGGGCAGCTTCGGCTCCCCTCAGTGCTTCCTGACCTCTTCCTCCTTCTGCTTCTACTCATCCTGACCTTCGACATTCACCACCAGCAACGGCATCCTGCCCAATACACGCAGGGc > 4:194100/1‑148 (MQ=255) ggCAACAACGCTTTGAGGGGAGCTTCGGCTCCCCTCAGTGCTTCCTGCCCTCTTCCTCCTTCTGCTTCTCCTCATCCTGCCCTTCGACCTTCTCCACCAGCAACGGCATCGTGCCCAGTACCAGCAGGGCCAGTACCGTGCTGATCAgc > 7:189293/1‑149 (MQ=255) cTTTGAGGGGAGCTTCGGCTCCCCTCAGTGCTTCCTGCCCTCTTCCTCCTTCTGCTTCTCCTCATCCTGCCCTTCGACCTTCTCCACCAGCAACGGCATCGTGCCCAGTACCAGCAGGGCCAGTACCGTGCTGATCAGCGCCGTGGCtt < 7:121107/149‑1 (MQ=255) tttGAGGGGAGCTTCGTCTCCCCTCAGTGCTTCCAGCCCTCTTCCTCCTTCTGCTTCTCCTCATCCTGCCCTTCGACCTTCTCCACCAGCAACGGCATCGTGCCCAGTACCAGCAGGGCCAGTACCGTCCTGATCAGCGCCGTGGCTTc > 1:129020/1‑149 (MQ=255) tttGAGGGGAGCTTCGGCTCCCCTCAGTGCTTCCTGCCCTCTTCCTCCTTCTGCTTCTCCTCATCCTGCCCTTCGACCTTCTCCACCAGCAACGGCATCGTGCCCAGTACCAGCAGGGCCAGTACCGTGCTGATCAGCGCCGTGGCTTc > 3:329466/1‑149 (MQ=255) tGAGGGGAGCCGAAGCTCCCCTCAGTGCTTCCTGCCCTCTTCCTCCTTCTGCTTCTCCTCATCCTGCCCTTCGACCTTCTCCACCAGCAACGGCATCGTGCCCAGTACCAGCAGGGCCAGTACCGTGCTGa < 3:104758/131‑1 (MQ=255) tGAGGGGAGCCGAAGCTCCCCTCAGTGCTTCCTGCCCTCTTCCTCCTTCTGCTTCTCCTCATCCTGCCCTTCGACCTTCTCCACCAGCAACGGCATCGTGCCCAGTACCAGCAGGGCCAGTACCGTGCTGa > 4:104758/1‑131 (MQ=255) gAGGGGAGCTTCGGCTCCCCTCAGTGCTTCCTGCCCTCTTCCTCCTTCTGCTTCTCCTCATCCTGCCCTTCGACCTTCTCCACCAGCAACGGCATCGTGCCCAGTACCAGCAGGGCCAGTACCGTGCTGATCAGCGCCGTGGCTTcgc < 3:149674/148‑1 (MQ=255) gtgAGCTTCGGCTCCCCTCAGTGCTTCCTGCCCTCTTCCTCCTTCTGCTTCTCCTCATCCTGCCCTTCGACCTTCTCCACCAGCAACGGCATCGTGCCCAGTACCAGCAGGGCCAGTACCGTGGTGATCAGCGCCGTGGCTTCGCGcc < 2:129020/146‑1 (MQ=255) cTTCGGCTCCCCTCAGTGCTTCCTGCCCTCTTCCTCCTTCTGCTTCTCCTCATCCTGCCCTTCGACCTTCTCCACCAGCAACGGCATCGTGCCCAGTACCAGCAGGGCCAGTACCGTGCTGATCAGCGCCGTGGCTTCGCGCCCCATGc < 8:284351/149‑1 (MQ=255) ggCTCCCCTCAGTGCTTCCTGCCCTCTTCCTCCTTCTGCTTCTCCTCATCCTGCCCTTCGACCTTCTCCACCAGCAACGGCATCGTGCCCAGTACCAGCAGGGCCAGTACCGTGCTGATCAGCGCCGTGGCTTCGCGCCCCATGCCAgc > 5:266989/1‑149 (MQ=255) | GCAGGTCAGCGCTCAAAAAAATACGTTTGCTCTTGACCCCGCCTGGGGGTCGCCCGCAACACCAGGACAAGCCGACAAAAACAACAATAGGCCGGTCCCAATAATAA‑AAAAAGAGCAGGCAACAACGCTTTGAGGGGAGCTTCGGCTCCCCTCAGTGCTTCCTGCCCTCTTCCTCCTTCTGCTTCTCCTCATCCTGCCCTTCGACCTTCTCCACCAGCAACGGCATCGTGCCCAGTACCAGCAGGGCCAGTACCGTGCTGATCAGCGCCGTGGCTTCGCGCCCCATGCCAGC > NC_002947/4013446‑4013737 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |