| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 4,476,303 | C→G | 6.9% | intergenic (‑52/‑124) | PP_3966 ← / → PP_3967 | transposase/MutT/nudix family protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 4,476,303 | 0 | C | G | 6.9% | 162.3 / 3.4 | 58 | intergenic (‑52/‑124) | PP_3966/PP_3967 | transposase/MutT/nudix family protein |
| Reads supporting (aligned to +/- strand): ref base C (26/28); new base G (2/2); total (28/30) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.71e-01 | |||||||||||
CGACACTGGACACGGTTGCGCCAGGTTGCAGGCATTCCTGAACGACCTGGGCTTTGAACGGTTTCGGATAAGAGCTTCGTTGGCGCATGGAAATCCTGGCGATAAGGGTGATCGCGTCCGCTTAAAAATACGCGGACACCATCGCCCTTAATGCTGGAGTTCGGAAGGTGAGTTCGCCGGACGCTTACGAAGCGGCTGGAATCATGCTGAGAGGTTGGTGCAACGACCCGACAGGCCATTCACCGAGCGGAGTGAACTTCCAGATGCAGGTATGGCCTTCCGTTCATA > NC_002947/4476164‑4476451 | cGACACTGGACACGGTTGCGCCAGGTTGCAGGCATTCCTGAACGACCTGGGCTTTGAACGGTTTCGGATAAGAGCTTCGTTGGCGCATGGAAATCCTGGCGATAAGGGTGATCGCGTCCGCTTAAAAATACGCGGACACCATCGCCCt < 7:160006/148‑1 (MQ=32) cacTGGACACGGTTGCGCCAGGTTGCAGGCATTCCTGAACGACCTGGGCTTTGAACGGTTTCGGATAAGAGCTTCGTTGGCGCATGGAAATCCTGGCGATAAGGGTGATCGCGTCCGCTTAAAAATACGCGGACACCATCGCCCTTAAt < 6:220377/149‑1 (MQ=32) cacTGGACACGGTTGCGCCAGGTTGCAGGCATTCCTGAACGACCTGGGCTTTGAACGGTTTCGGATAAGAGCTTCGTTGGCGCATGGAAATCCTGGCGATAAGGGTGATCGCGTCCGCTTAAAAATACGCGGACACCATCGCCCTTAAt < 8:18208/149‑1 (MQ=32) cacTGGACACGGTTGCGCCAGGTTGCAGGCATTCCTGAACGACCTGGGCTTTGAACGGTTTCGGATAAGAGCTTCGTTGGCGCATGGAAATCCTGGCGATAAGGGCGATGGTGTCCGCGTATTTTTAAGCGGACGCGATCACCCTTatc < 2:235279/149‑3 (MQ=11) tGGACACGGTTGCGCCAGGTTGCAGGCATTCCTGAACGACCTGGGCTTTGAACGGTTTCGGATAAGAGCTTCGTTGGCGCATGGAAATCCTGGCGGTAAGGGTGATCGCGTCCGCTTAAAAATACGCGGACACCATCGCCCTTAATGCt > 3:219449/1‑149 (MQ=17) tGGACACGGTTGCGCCAGGTTGCAGGCATTCCTGAACGACCTGGGCTTTGAACGGTTTCGGATAAGAGCTTCGTTGGCGCATGGAAATCCTGGCGATAAGGGTGATCGCGTCCGCTTAAAAATACGCGGACACCa > 8:65973/1‑135 (MQ=32) tGGACACGGTTGCGCCAGGTTGCAGGCATTCCTGAACGACCTGGGCTTTGAACGGTTTCGGATAAGAGCTTCGTTGGCGCATGGAAATCCTGGCGATAAGGGTGATCGCGTCCGCTTAAAAATACGCGGACACCa < 7:65973/135‑1 (MQ=32) tGGACACGGTTGCGCCAGGTTGCAGGCATTCCTGAACGACCTGGGCTTTGAACGGTTTCGGATAAGAGCTTCGTTGGCGCATGGAAATCCTGGCGATAAGGGTGATCGCGTCCGCTTAAAAATACGCGGACACCATCGCCCTTAATGCt > 8:191217/1‑149 (MQ=32) acacGGTTGCGCCAGGTTGCAGGCATTCCTGAACGACCTGGGCTTTGAACGGTTTCGGATAAGAGCTTCGTTGGCGCATGGAAATCCTGGCGATAAGGGTGATCGCGTCCGCTTAAAAATACGCGGACACCATCGCCCTTAATGCTGGa < 7:188769/149‑1 (MQ=32) acGGTTGCGCCAGGTTGCAGGCATTCCTGAACGACCTGGGCTTTGAACGGTTTCGGATAAGAGCTTCGTTGGCGCATGGAAATCCTGGCGATAAGGGTGATCGCGTCCGCTTAAAAATACGCGGACACCATCGCCCTTAATGCTGGAGt > 1:42118/1‑149 (MQ=32) ggTTGCGCCAGGTTGCAGGCATTCCTGAACGACCTGGGCTTTGAACGGTTTCGGATAAGAGCTTCGTTGGCGCATGGAAATCCTGGCGATAAGGGTGATCGCGTCCGCTTAAAAATACGCGGACACCATCGCCCTTAATGCTGGAGTTc < 5:267844/149‑1 (MQ=32) cgcCAGGTTGCAGGCATTCCTGAACGACCTGGGCTTTGAACGGTTTCGGATAAGAGCTTCGTTGGCGCATGGAAATCCTGGCGATAAGGGTGATCGCGTCCGCTTAAAAATACGCGGACACCATCGCCCTTAATGCTGGAGTTCGGAAg > 8:102214/1‑149 (MQ=32) gcCAGGTTGCAGGCATTCCTGAACGACCTGGGCTTTGAACGGTTTCGGATAAGAGCTTCGTTGGCGCATGGAAATCCTGGCGATAAGGGTGATCGCGTCCGCTTAAAAATACGCGGACACCATCGCCCTTAATGCTGGAGTTCGGAAgg > 5:24127/1‑149 (MQ=32) ccAGGTTGCAGGCATTCCTGAACGACCTGGGCTTTGAACGGTTTCGGATAAGAGCTTCGTTGGCGCATGGAAATCCTGGCGATAAGGGTGATCGCGTCCGCTTAAAAATACGCGGACACCATCGCCCTTAATGCt > 7:47605/1‑135 (MQ=32) ccAGGTTGCAGGCATTCCTGAACGACCTGGGCTTTGAACGGTTTCGGATAAGAGCTTCGTTGGCGCATGGAAATCCTGGCGATAAGGGTGATCGCGTCCGCTTAAAAATACGCGGACACCATCGCCCTTAATGCt < 8:47605/135‑1 (MQ=32) aGGTTGCAGGCATTCCTGAACGACCTGGGCTTTGAACGGTTTCGGATAAGAGCTTCGTTGGCGCATGGAAATCCTGGCGGTAAGGGTGATCGCGTCCGCTTAAAAATACGCGGACACCATCGCCCTTAATGCTGGAGTTCGGAAGGTGa < 4:219449/149‑1 (MQ=17) gTTGCAGGCATTCCTGAACGACCTGGGCTTTGAACGGTTTCGGATAAGAGCTTCGTTGGCGCATGGAAATCCTGGCGATAAGGGTGATCGCGTCCGCTTAAAAATACGCGGACACCATCGCCCTTAATGCTGGAGTTCGGAAGGTGAGt < 1:259427/149‑1 (MQ=32) aTTCCTGAACGACCTGGGCTTTGAACGGTTTCGGATAAGAGCTTCGTTGGCGCATGGAAATCCTGGCGATAAGGGTGATCGCGTCCGCTTAAAAATACGCGGACACCATCGCCCTTAATGCTGGAGTTCGGAAGGTGAGTTCGACGGAc > 8:279993/1‑149 (MQ=17) ccTGAACGACCTGGGCTTTGAACGGTTTCGGATAAGAGCTTCGTTGGCGCATGGAAATCCTGGCGATAAGGGTGATCGCGTCCGCTTAAAAATACGCGGACACCATCGCCCTTAATGCTGGAGTTCGGAAGGTGAGTTCGCCg > 8:6959/1‑143 (MQ=32) ccTGAACGACCTGGGCTTTGAACGGTTTCGGATAAGAGCTTCGTTGGCGCATGGAAATCCTGGCGATAAGGGTGATCGCGTCCGCTTAAAAATACGCGGACACCATCGCCCTTAATGCTGGAGTTCGGAAGGTGAGTTCGCCg < 7:6959/143‑1 (MQ=32) ccTGAACGACCTGGGCTTTGAACGGTTTCGGATAAGAGCTTCGTTGGCGCATGGAAATCCTGGCGATAAGGGTGATCGCGTCCGCTTAAAAATACGCGGACACCATCGCCCTTAATGCTGGAGTTCGGAAGGTGAGTTCGCCGGACGCt > 6:312183/1‑149 (MQ=32) cTGAACGACCTGGGCTTTGAACGGTTTCGGATAAGAGCTTCGTTGGCGCATGGAAATCCTGGCGATAAGGGTGATCGCGTCCGCTTAAAAATACGCGGACACCATCGCCCTTAATGCTGGAGTTCGGAAGGTGAGTTCGCCGGACGCtt < 2:72445/149‑1 (MQ=32) aaCGACCTGGGCTTTGAACGGTTTCGGATAAGAGCTTCGTTGGCGCATGGAAATCCTGGCGATAAGGGTGATCGCGTCCGCTTAAAAATACGCGGACACCATCGCCCTTAATGCTGGAGTTCGGAAGGTGAGTTCGCCGGACGCTTAc < 7:102214/148‑1 (MQ=32) ccTGGGCTTTGAACGGTTTCGGATAAGAGCTTCGTTGGCGCATGGAAATCCTGGCGATAAGGGTGATCGCGTCCGCTTAAAAATACGCGGACACCATCGCCCTTAATGCTGGa > 5:150073/1‑113 (MQ=32) ccTGGGCTTTGAACGGTTTCGGATAAGAGCTTCGTTGGCGCATGGAAATCCTGGCGATAAGGGTGATCGCGTCCGCTTAAAAATACGCGGACACCATCGCCCTTAATGCTGGa < 6:150073/113‑1 (MQ=32) ttGAACGGTTTCGGATAAGAGCTTCGTTGGCGCATGGAAATCCTGGCGATAAGGGTGATCGCGTCCGCTTAAAAATACGCGGACACCATCGCCCTTAATGCTGGAGTTCGGAAGGTGAGTTCGCCGGACGCTTACGAAGc > 2:311827/1‑140 (MQ=34) ttGAACGGTTTCGGATAAGAGCTTCGTTGGCGCATGGAAATCCTGGCGATAAGGGTGATCGCGTCCGCTTAAAAATACGCGGACACCATCGCCCTTAATGCTGGAGTTCGGAAGGTGAGTTCGCCGGACGCTTACGAAGc < 1:311827/140‑1 (MQ=34) ggTTTCGGATAAGAGCTTCGTTGGCGCATGGAAATCCTGGCGATAAGGGTGATCGCGTCCGCTTAAAAATACGCGGACACCATCGCCCTTAATGCTGGAGTTCGGAAGGTGAGTTCGCCGGACGCTTACGAAGCGGCTGGAATCATGCt < 5:312183/149‑1 (MQ=255) gTTTCGGATAAGAGCTTCGTTGGCGCATGGAAATCCTGGCGATAAGGGTGATCGCGTCCGCTTAAAAATACGCGGACACCATCGCCCTTAATGCTGGAGTTCGGAAGGTGAGTTCGCCGGACGCTTACGAAGCGGCTGGAATCATGCt > 6:114741/1‑148 (MQ=255) tttCGGATAAGAGCTTCGTTGGCGCATGGAAATCCTGGCGATAAGGGTGATCGCGTCCGCTTAAAAATACGCGGACACCATCGCCCTTAATGCTGGAGTTCGGAAGGTGAGTTCGCCGGACGCTTACGAAGCGGCTGGAATCATGCTga < 2:49505/149‑1 (MQ=255) tCGGATAAGAGCTTCGTTGGCGCATGGAAATCCTGGCGATAAGGGTGATCGCGTCCGCTTAAAAATACGCGGACACCATCGCCCTTAATGCTGGAGTTCGGAAGGTGAGTTCGCCGGACGCTTACGAAGCGGCTGGAATCATGCTgag < 5:166433/148‑1 (MQ=255) ggATAAGAGCTTCGTTGGCGCATGGAAATCCTGGCGATAAGGGTGATCGCGTCCGCTTAAAAATACGCGGACACCATCGCCCTTAATGCTGGAGTTCGGAAGGTGAGTTCGCCGGACGCTTACGAAGCGGCTGGAATCATGCTGAGAgg > 4:58975/1‑149 (MQ=255) aTAAGAGCTTCGTTGGCGCATGGAAATCCTGGCGATAAGGGTGATCGCGTCCGCTTAAAAATACGCGGACACCATCGCCCTTAATGCTGGAGTTCGGAAGGTGAGTTCGCCGGACGCTTACGAAGCGGCTGGAATCAt < 4:246934/138‑1 (MQ=255) aTAAGAGCTTCGTTGGCGCATGGAAATCCTGGCGATAAGGGTGATCGCGTCCGCTTAAAAATACGCGGACACCATCGCCCTTAATGCTGGAGTTCGGAAGGTGAGTTCGCCGGACGCTTACGAAGCGGCTGGAATCAt > 3:246934/1‑138 (MQ=255) gagCTTCGTTGGCGCATGGAAATCCTGGCGATAAGGGTGATCGCGTCCGCTTAAAAATACGCGGACACCATCGCCCTTAATGCTGGAGTTCGGAAGGTGAGTTCGCCGGACGCTTACGAAGCGGCTGGAATCATGCTGAGAGGTTGGTg > 6:124056/1‑149 (MQ=255) gagCTTCGTTGGCGCATGGAAATCCTGGCGATAAGGGTGATCGCGTCCGCTTAAAAATACGCGGACACCATCGCCCTTAATGCTGGAGTTCGGAAGGTGAGTTCGCCGGACGCTTACGAAGCGGCTGGAATCATGCTGAGAGGTTGGTg > 1:288769/1‑149 (MQ=255) cTTCGTTGGCGCATGGAAATCCTGGCGATAAGGGTGATCGCGTCCGCTTAAAAATACGCGGACCCCATCGCCCTTAATGCTGGAGTTCGGAAGGTGAGTTCGCCGGACGCTTACGAAGCGGCTGGAATCCTGCTGAGAGGTTGGTGCac > 8:227810/1‑148 (MQ=255) cTTCGTTGGCGCATGGAAATCCTGGCGATAAGGGTGATCGCGTCCGCTTAAAAATACGCGGACACCATCGCCCTTAATGCTGGAGTTCGGAAGGTGAGTTCGCCGGACGCTTACGAAGCGGCTGGAATCATGCTGAGAGGTTGGTGCaa < 5:114741/149‑1 (MQ=255) ttCGTTGGCGCATGGAAATCCTGGCGATAAGGGTGATCGCGTCCGCTTAAAAATACGCGGACACCATCGCCCTTAATGCTGGAGTTCGGAAGGTGAGTTCGCCGGACGCTTACGAAGCGGCTGGAATCATGCTGAGAGGTTg > 5:295401/1‑142 (MQ=255) ttCGTTGGCGCATGGAAATCCTGGCGATAAGGGTGATCGCGTCCGCTTAAAAATACGCGGACACCATCGCCCTTAATGCTGGAGTTCGGAAGGTGAGTTCGCCGGACGCTTACGAAGCGGCTGGAATCATGCTGAGAGGTTg < 6:295401/142‑1 (MQ=255) gTTGGCGCATGGAAATCCTGGCGATAAGGGTGATCGCGTCCGCTTAAAAATACGCGGACACCATCGCCCTTAATGCTGGAGTTCGGAAGGTGAGTTCGCCGGACGCTTACGAAGCGGCTGGAATCATGCTGAGAGGTTGGTGCAACGAc < 2:288769/149‑1 (MQ=255) gcATGGAAATCCTGGCGATAAGGGTGATCGCGTCCGCTTAAAAATACGCGGACACCATCGCCCTTAATGCTGGAGTTCGGAAGGTGAGTTCGCCGGACGCTTACGAAGCGGCTGGAATCATGCTGAGAGGTTGGTGCAACGACCCGACa < 6:24127/149‑1 (MQ=255) tGGAAATCCTGGCGATAAGGGTGATCGCGTCCGCTTAAAAATACGCGGACACCATCGCCCTTAATGCTGGAGTTCGGAAGGTGAGTTCGCCGGACGCTTACGAAGCGGCTGGAATCATGCTGAGAGGTTGGTGCAACGCCCCGACAGGc > 4:91566/1‑149 (MQ=255) tGGAAATCCTGGCGATAAGGGTGATCGCGTCCGCTTAAAAATACGCGGACACCATCGCCCTTAATGCTGGAGTTCGGAAGGTGAGTTCGCCGGACGCTTACGAAGCGGCTGGAATCATGCTGAGAGGTTGGTGCAACGACCCGACAGGc < 7:191217/149‑1 (MQ=255) aTCCTGGCGATAAGGGTGATCGCGTCCGCTTAAAAATACGCGGACACCATCGCCCTTAATGCTGGAGTTCGGAAGGTGAGTTCGCCGGACGCTTACGAAGCGGCTGGAATCATGCTGAGAGGTTGGTGCAACGACCCGACAGGCCATTc < 6:24145/149‑1 (MQ=255) tGGCGATAAGGGTGATCGCGTCCGCTTAAAAATACGCGGACACCATCGCCCTTAATGCTGGAGTTCGGAAGGTGAGTTCGCCGGACGCTTACGAAGCGGCTGGAATCATGCTGAGAGGTTGGTGCAACGACCCGACAGGCCATTCAcc > 4:126844/1‑148 (MQ=255) cagcattAAGGGCGATGGTGTCCGCGTATTTTTAAGCGGACGCGATCACCCTTAATGCTGGAGTTCGGAAGGTGAGTTCGCCGGACGCTTACGAAGCGGCTGGAATCATGCTGAGAGGTTGGTGCAACGACCCGACAGGCCATTCAcc > 6:16090/7‑148 (MQ=21) gcattAAGGGCGATGGTGTCCGCGTATTTTTAAGCGGACGCGATCACCCTTAATGGTGGAGTTCGGAAGGTGAGTTCGCCGGACGCTTACGAAGCGGCTGGAATGATGCTGAGAGGTTGGTGCAACGACCCGACAGGCCATTCACCGAg > 5:106905/5‑149 (MQ=21) gCGATAAGGGTGATCGCGTCCGCTTAAAAATACGCGGACACCATCGCCCTTAATGCTGGAGTTCGGAAGGTGAGTTCGCCGGACGCTTACGAAGCGGCTGGAATCATGCTGAGAGGTTGGTGCAACGACCCGACAGGCCATTCACCg < 5:124056/147‑1 (MQ=255) aGGGTGATCGCGTCCGCTTAAAAATACGCGGACACCATCGCCCTTAATGCTGGAGTTCGGAAGGTGAGTTCGCCGGACGCTTACGAAGCGGCTGGAATCATGCTGAGAGGTTGGTGCAACGACCCGACAGGCCATTCACCGAGCGGAGt < 2:42118/149‑1 (MQ=255) gggTGATCGCGTCCGCTTAAAAATACGCGGACACCATCGCCCTTAATGCTGGAGTTCGGAAGGTGAGTTCGCCGGACGCTTACGAAGCGGCTGGAATCATGCTGAGAGGTTGGTGCAACGACCCGACAGGCCATTCACCGAGCGGAGt > 6:268941/1‑148 (MQ=255) ggTGATCGCGTCCGCTTAAAAATACGCGGACACCATCGCCCTTAATGCTGGAGTTCGGAAGGTGAGTTCGCCGGACGCTTACGAAGCGGCTGGAATCATGCTGAGAGGTTGGTGCAACGACCCGACAGGCCATTCACCGAGCGGAGTg > 8:195606/1‑148 (MQ=255) aaaaaTACGCGGACACCATCGCCCTTAATGCTGGAGTTCGGAAGGTGAGTTCGCCGGACGCTTACGAAGCGGCTGGAATCATg > 4:322355/1‑83 (MQ=255) aaaaaTACGCGGACACCATCGCCCTTAATGCTGGAGTTCGGAAGGTGAGTTCGCCGGACGCTTACGAAGCGGCTGGAATCATg < 3:322355/83‑1 (MQ=255) taagcgGACGCGATCACCCTTAATGCTGGAGTTCGGAAGGTGAGTTCGCCGGACGCTTACGAAGCGGCTGGAATCATGCTGAGAGGTTGGTGCAACGACCCGACAGGCCATTCACCGAGCGGAGTGAACTTCCAGATGCAGGTATGGc < 4:317882/145‑1 (MQ=255) gcgGACACCATCGCCCTTAATGCTGGAGTTCGGAAGGTGAGTTCGCCGGACGCTTACGAAGCGGCTGGAATCATGCTGAGAGGTTGGTGCAACGACCCGACAGGCCATTCACCGAGCGGAGTGAACTTCCAGATGCAGGTATGGCCTTc > 4:68190/1‑149 (MQ=255) gACACCATCGCCCTTAATGCTGGAGTTCGGAAGGTGAGTTCGCCGGACGCTTACGAAGCGGCTGGAATCATGCTGAGAGGTTGGTGCAACGACCCGACAGGCCATTCACCGAGCGGAGTGAACTTCCAGATGCAGGTATGGCCTTCCGt > 2:86652/1‑149 (MQ=255) acacCATCGCCCTTAATGCTGGAGTTCGGAAGGTGAGTTCGCCGGACGCTTACGAAGCGGCTGGAATCATGCTGAGAGGTTGGTGCAACGACCCGACAGGCCATTCTCCGAGCGGAGTGAACTTCCAGATGCAGGTATGGCCTTCCGtt < 7:195606/149‑1 (MQ=255) cATCGCCCTTAATGCTGGAGTTCGGAAGGTGAGTTCGCCGGACGCTTACGAAGCGGCTGGAATCATGCTGAGAGGTTg > 4:109681/1‑78 (MQ=255) cATCGCCCTTAATGCTGGAGTTCGGAAGGTGAGTTCGACGGACGCTTACGAAGCGTCTGGAATCATGCTGAGAGGTTGGTGCAAAGACACGACAGGCCATTCACCTAGCGGAGTGAACTTCCAGATGCAGGTATTGCCTTCCGTTCATa > 1:197660/1‑149 (MQ=38) | CGACACTGGACACGGTTGCGCCAGGTTGCAGGCATTCCTGAACGACCTGGGCTTTGAACGGTTTCGGATAAGAGCTTCGTTGGCGCATGGAAATCCTGGCGATAAGGGTGATCGCGTCCGCTTAAAAATACGCGGACACCATCGCCCTTAATGCTGGAGTTCGGAAGGTGAGTTCGCCGGACGCTTACGAAGCGGCTGGAATCATGCTGAGAGGTTGGTGCAACGACCCGACAGGCCATTCACCGAGCGGAGTGAACTTCCAGATGCAGGTATGGCCTTCCGTTCATA > NC_002947/4476164‑4476451 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |