| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 58,747 | T→A | 10.4% | intergenic (‑658/+30) | PP_5424 ← / ← PP_0050 | hypothetical protein/hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 58,747 | 0 | T | A | 10.4% | 218.3 / 12.4 | 84 | intergenic (‑658/+30) | PP_5424/PP_0050 | hypothetical protein/hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base T (39/35); new base A (5/4); total (44/40) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.46e-01 | |||||||||||
TGAGTAGGGATTTCTCGGCTTTTCTGTGAAAAGCACCCCTTCATTTCACAAAAAAAATGGCGAAGATTCCAATTTCACGGGGTCTGGCCTATCACCTATTTTGTGAACCTACAA‑‑GGTGTAATTCGCCAGACACTAAAAAGCCCGCTGCTGCGGGCTTTTTAGTGCCTGCAAACAATCAGTAGCCGGTGAGAATGTTCACGATCACACCGCTGGCAATGGCCACCAGAACATAGTC‑GCCATTCACATACAGCCAACGATGATCACGAGGTGGCGCATACAGGTGGCGC > NC_002947/58602‑58888 | tGAGTAGGGATTTCTCGGCTTTTCTGTGAAAAGCACCCCTTCATTTCACAAAAAAAATGGCGAAGATTCCAATTTCACGGGGTCTGGCCTATCACCTATTTTGTGAACCTACAA‑‑GGTGTAATTCGCCAGACACTAAAAAGCCCgcagca < 2:189532/149‑2 (MQ=255) aGTAGGGATTTCTCGGCTTTTCTGTGAAAAGCACCCCTTCATTTCACAAAAAAAATGGCGAAGATTCCAATTTCACGGGGTCTGGCCTATCACCTATTTTGTGAACCTACAA‑‑GGTGTAATTCGCCAGACACTAAAAAGCCCGctgctg < 1:154747/148‑1 (MQ=255) aGGGATTTCTCGGCTTTTCTGTGAAAAGCACCCCTTCATTTCACAAAAAAAATGGCGAAGATTCCAATTTCACGGGGTCTGGCCTATCACCTATTTTGTGAACCTACAA‑‑GGTGTAATTCGCCAGACACTAAAAAGCCCGCTGCTGCgg < 3:227658/148‑1 (MQ=255) gggATTTCTCGGCTTTTCTGTGAAAAGCACCCCTTCATTTCACAAAAAAAATGGCGAAGATTCCAATTTCACGGGGTCTGGCCTATCACCTATTTTGTGAACCTACAA‑‑GGTGTAATTCGCCAGACACTAAAAAGCCCGCTGCTGCGGGc > 2:318179/1‑149 (MQ=255) gtttttCACGGATTTTATGTAAAATGAACCCATTAATTT‑AAAAAAAAAATGGCGAAGATTCCAATTTCACGGGGTCTGGCCTATCACCTATTTTGTGAACCTACAA‑‑GGTGTAATTCGCCAGGCACTAAAAAGCCCGCAGCAGCGGGCtt < 5:192262/146‑1 (MQ=255) ggATTTCTCGGCTTTTCTGTGAAAAGCACCCCTTCATTTCACAAAAAAAATGGCGAAGATTCCAATTTCACGGGGTCTGGCCTATCACCTATTTTGTGAACCTACAA‑‑GGTGTAATTCGCCAGACACTAAAAAGCCCGCTGCTGCGGGCt > 2:224585/1‑149 (MQ=255) gATTTCTCGGCTTTTCTGTGAAAAGCACCCCTTCATTTCACAAAAAAAATGGCGAAGATTCCAATTTCACGGGGTCTGGCCTATCACCTATTTTGTGAACCTACAA‑‑GGTGTAATTCGCCAGGCACTAAAAAGCCCGCAGCAGCGGGCtt < 2:187396/149‑1 (MQ=255) tttCTCGGCTTTTCTGTGAAAAGCACCCCTTCATTTCACAAAAAAAATGGCGAAGATTCCAATTTCACGGGGTCTGGCCTATCACCTATTTTGTGAACCTACAA‑‑GGTGTAATTCGCCAGACACTAAAAAGCCCGCTGCTGCGGGCtttt < 2:271233/149‑1 (MQ=255) ctcGGCTTTTCTGTGAAAAGCACCCCTTCATTTCACAAAAAAAATGGCGAAGATTCCAATTTCACGGGGTCTGGCCTATCACCTATTTTGTGAACCTACAA‑‑GGTGTAATTCGCCAGACACTAAAAAGCCCGCTGCTGCGGGCTTTTTAg > 5:345505/1‑149 (MQ=255) ctcGGCTTTTCTGTGAAAAGCACCCCTTCATTTCACAAAAAAAATGGCGAAGATTCCAATTTCACGGGGTCTGGCCTATCACCTATTTTGTGAACCTACAA‑‑GGTGTAATTCGCCAGACACTAAAAAGCCCGCAGCAGCGGGCTTTTTa < 3:161120/148‑1 (MQ=255) tcGGCTTTTCTGTGAAAAGCACCCCTTCATTTCACAAAAAAAATGGCGAAGATTCCAATTTCACGGGGTCTGGCCTATCACCTATTTTGTGAACCTACAA‑‑GGTGTAATTCGCCAGACACTAAAAAGCCCGCTGCTGCGGGCtttt < 7:278309/145‑1 (MQ=255) tcGGCTTTTCTGTGAAAAGCACCCCTTCATTTCACAAAAAAAATGGCGAAGATTCCAATTTCACGGGGTCTGGCCTATCACCTATTTTGTGAACCTACAA‑‑GGTCTAATTCGCCAGACACTAAAAAGACCGCTGCTGCGGCCtttt > 8:278309/1‑145 (MQ=255) gtgCTTTTCACAGAAAAGCACCCCTTCATTTCACAAAAAAAATGGCGAAGATTCCAATTTCACGGGGTCTGGCCTATCACCTATTTTGTGAACCTACAA‑‑GGTGTAATTCGCCAGACACTAAAAAGCCCGCTGCTGCGGGCTTTTTAGTg > 1:133426/3‑149 (MQ=255) ggCTTTTCTGTGAAAAGCACCCCTTCATTTCACAAAAAAAATGGCGAAGATTCCAATTTCACGGGGTCTGGCCTATCACCTATTTTGTGAACCTACAA‑‑GGTGTAATTCGCCAGACACTAAAAAGCCCGCTGCTGCGGGCTTTTTa > 4:205412/1‑145 (MQ=255) ggCTTTTCTGTGAAAAGCACCCCTTCATTTCACAAAAAAAATGGCGAAGATTCCAATTTCACGGGGTCTGGCCTATCACCTATTTTGTGAACCTACAA‑‑GGTGTAATCCGCCAGACACTAAAAAGCCCGCTGCTGCGGGCTTTTTa < 3:205412/145‑1 (MQ=255) acagAAAAGCACCCCTTCATTTCACAAAAAAAATGGCGAAGATTCCAATTTCACGGGGTCTGGCCTATCACCTATTTTGTGAACCTACAA‑‑GGTGTAATTCGCCAGACACTAAAAAGCCCGCTGCTGCGGGCTTTTTAGTGCCTGCaaa > 5:333877/4‑148 (MQ=255) tgAAAAGCACCCCTTCATTTCACAAAAAAAATGGCGAAGATTCCAATTTCACGGGGTCTGGCCTATCACCTATTTTGTGAACCTACAA‑‑GGTGTAATTCGCCAGACACTAAAAAGCCCGCTGCTGCGGGCTTTTTAGTGCCTGCAAACaa > 3:76043/1‑149 (MQ=255) gAAAAGCACCCCTTCATTTCACAAAAAAAATGGCGAAGATTCCAATTTCACGGGGTCTGGCCTATCACCTATTTTGTGAACCTACAA‑‑GGTGTAATTCGCCAGACACTAAAAAGCCCGCTGCTGCGGGCTTTTTAg > 6:346371/1‑135 (MQ=255) gAAAAGCACCCCTTCATTTCACAAAAAAAATGGCGAAGATTCCAATTTCACGGGGTCTGGCCTATCACCTATTTTGTGAACCTACAA‑‑GGTGTAATTCGCCAGACACTAAAAAGCCCGCTGCTGCGGGCTTTTTAg < 5:346371/135‑1 (MQ=255) aaaaGCACCCCTTCATTTCACAAAAAAAATGGCGAAGATTCCAATTTCACGGGGTCTGGCCTATCACCTATTTTGTGAACCTACAA‑‑GGTGTAATTCGCCAGACACTAAAAAGCCCGCTGCTGCggg > 5:162535/1‑126 (MQ=255) aaaaGCACCCCTTCATTTCACAAAAAAAATGGCGAAGATTCCAATTTCACGGGGTCTGGCCTATCACCTATTTTGTGAACCTACAA‑‑GGTGTAATTCGCCAGACACTAAAAAGCCCGCTGCTGCggg < 6:162535/126‑1 (MQ=255) aaaaGCACCCCTTCATTTCACAAAAAAAATGGCGAAGATTCCAATTTCACGGGGTCTGGCCTATCACCTATTTTGTGAACCTACAA‑‑GGTGTAATTCGCCAGACACTAAAAAGCCCGCTGCTGCGGGCTTTTTAGTGCCTGCAAACAAt < 1:318179/148‑1 (MQ=255) aaGCACCCCTTCATTTCACAAAAAAAATGGCGAAGATTCCAATTTCACGGGGTCTGGCCTATCACCTATTTTGTGAACCTACAA‑‑GGTGTAATTCGCCAGACACTAAAAAGCCCGCTGCTGCGGGCTTTTTAGTGCCTGCAAACAATCAg < 7:116935/149‑1 (MQ=255) gCACCCCTTCATTTCACAAAAAAAATGGCGAAGATTCCAATTTCACGGGGTCTGGCCTATCACCTATTTTGTGAACCTACAA‑‑GGTGTAATTCGCCAGACACTAAAAAGCCCTCTGCTGCGGGCTTTTTAGTGCCTGCAAACAATCAGTa < 1:60221/149‑1 (MQ=255) ccTTCATTTCACAAAAAAAATGGCGAAGATTCCAATTTCACGGGGTCTGGCCTATCACCTATTTTGTGAACCTACAA‑‑GGTGTAATTCGCCAGACACTAAAAAGCCCGCTGCTGCGGGCTTTTTAGTGCCTGCAAACAATCAGTAGCCgg > 8:280738/1‑149 (MQ=255) cTTCATTTCACAAAAAAAATGGCGAAGATTCCAATTTCACGGGGTCTGGCCTATCACCTATTTTGTGAACCTACAA‑‑GGTGTAATTCGCCAGACACTAAAAAGCCCGCTGCTGCGGGCTTTTTTGTGCCTGCAAACAATCAGTAGCCGGt < 1:9598/149‑1 (MQ=255) cTTCATTTCACAAAAAAAATGGCGAAGATTCCAATTTCACGGGGTCTGGCCTATCACCTATTTTGTGAACCTACAA‑‑GGTGTAATTCGCCAGACACTAAAAAGCCCGCTGCTGCGGGCTTTTTAGTGCCTGCAAACAATCAGTAGCCGGt < 6:345505/149‑1 (MQ=255) ttCACAAAAAAAATGGCGAAGATTCCAATTTCACGGGGTCTGGCCTATCACCTATTTTGTGAACCTACAA‑‑GGTGTAATTCGCCAGACACTAAAAAGCCCGCTGCTGCGGGCTTTTTAGTGCCTGCAAACAATCAGTAGCCGGTGAGAAt > 5:340733/1‑149 (MQ=255) cacaAAAAAAATGGCGAAGATTCCAATTTCACGGGGTCTGGCCTATCACCTATTTTGTGAACCTACTA‑‑GGTGTAATTCGCCAGACACTAAAAAGCCCGCTGCTGCGGGCTTTTTAGTGCCTGCAAACAATCAGTAGCCGGTGAGAATGt > 6:340842/1‑149 (MQ=255) cacaAAAAAAATGGCGAAGATTCCAATTTCACGGGGTCTGGCCTATCACCTATTTTGTGAACCTACAA‑‑GGTGTAATTCGCCAGACACTAAAAAGCCCGCTGCTGCGGGCTTTTTAGTGCCTGCAAACAATCAGTAGCCGGTGAGAATGt > 5:73752/1‑149 (MQ=255) acaAAAAAAATGGCGAAGATTCCAATTTCACGGGGTCTGGCCTATCACCTATTTTGTGAACCTACAA‑‑GGTGTAATTCGCCAGACACTAAAAAGCCCGCTGCTGCGGGCTTTTTAGTGCCTGCAAACAATCAGTAGCCGGTGAGAATGt > 5:321386/1‑148 (MQ=255) aaaaaaaaTGGCGAAGATTCCAATTTCACGGGGTCTGGCCTATCACCTATTTTGTGAACCTACAAGGGGAGTAATTCGCCAGACACTAAAAAGCCCGCTGCTGCGGGCTTTTTAGTGCCTGCAAAAAATCAGTAGCCGGTGAGAATGt > 1:280068/1‑148 (MQ=255) aaaaaaaaTGGCGAAGATTCCAATTTCACGGGGTCTGGCCTATCACCTATTTTGTGAACCTACAA‑‑GGTGTAATTCGCCAGACACTAAAAAGCCCGCTGCTGCGGGCTTTTTAGTGCCTGCAAACAATCAGTAGCCGGTGAGAATGTTCa < 4:56570/149‑1 (MQ=255) aaaaaaaaTGGCGAAGATTCCAATTTCACGGGGTCTGGCCTATCACCTATTTTGTGAACCTACAA‑‑GGTGTAATTCGCCAGACACTAAAAAGCCCGCTGCTGCGGGCTTTTTAGTGCCTGCAAACAATCAGTAGCCGGTGAGAATGTTCa > 5:220285/1‑149 (MQ=255) aaaaaaaTGGCGAAGATTCCAATTTCACGGGGTCTGGCCTATCACCTATTTTGTGAACCTACAA‑‑GGTGTAATTCGCCAGACACTAAAAAGCCCGCTGCTGCGGGCTTTTTAGTGCCTGCAAACAATCAGTAGCCGGTGAGAATGTTCAc < 7:280738/149‑1 (MQ=255) aaaaaaTGGCGAAGATTCCAATTTCACGGGGTCTGGCCTATCACCTATTTTGTGAACCTACAA‑‑GGTGTAATTCGCCAGACACTAAAAAGCCCGCTGCTGCGGGCTTTTTAGTGCCTGCAAACAATAAGTAGCCGGTGAGAATGATCAc > 6:241142/1‑148 (MQ=255) gCGAAGATTCCAATTTCACGGGGTCTGGCCTATCACCTATTTTGTGAACCTACAA‑‑GGTGTAATTCGCCAGACACTAAAAAGCCCGCTGCTGCGGGCTTTTTAGTGCCTGCAAACAATCAGTAGCCGGTGAGAATGTTCACGATCACAcc > 8:91956/1‑149 (MQ=255) aaGATTCCAATTTCACGGGGTCTGGCCTATCACCTATTTTGTGAACCTACAA‑‑GGTGTAATTCGCCAGACACTAAAAAGCCCGCTGCTGCGGGCTTTTTa > 8:150926/1‑99 (MQ=255) aaGATTCCAATTTCACGGGGTCTGGCCTATCACCTATTTTGTGAACCTACAA‑‑GGTGTAATTCGCCAGACACTAAAAAGCCCGCTGCTGCGGGCTTTTTa < 7:150926/99‑1 (MQ=255) aGATTCCAATTTCACGGGGTCTGGCCTATCACCTATTTTGTGAACCTACAA‑‑GGTGTAATTCGCCAGACACTAAAAAGCCCGCTGCTGCGGGCTTTTTAGTGCCTGCAAACAATCAGTAGCCGGTGAGAATGTTCACGATCACACCGCTg < 6:321386/149‑1 (MQ=255) gATTCCAATTTCACGGGGTCTGGCCTATCACCTATTTTGTGAACCTACAA‑‑GGTGTAATTCGCCAGACACTAAAAAGCCCGCTGCTGCGGGCTTTTTAGTGCCTGCAAACAATCAGTAGCCGGTGAGAATGTTCACGATCACACCGCTgg < 6:340733/149‑1 (MQ=255) tCCAATTTCACGGGGTCTGGCCTATCACCTATTTTGTGAACCTACAA‑‑GGTGTAATTCGCCAGACACTAAAAAGCCCGCTGCTGCGGGCTTTTTa < 6:296716/94‑1 (MQ=255) cAATTTCACGGGGTCTGGCCTATCACCTATTTTGTGAACCTACAA‑‑GGTGTAATTCGCCAGACACTAAAAAGCCCGCTGCTGCGGTCTTTTTAGTGCCTGCAAACAATCAGTAGCCGGTGAGAATGTTCACGATCACACCGCTGTCAATg < 5:241142/149‑1 (MQ=255) cAATTTCACGGGGTCTGGCCTATCACCTATTTTGTGAACCTACAA‑‑GGTGTAATTCGCCAGACACTAAAAAGCCCGCTGCTGCGGGCTTTTTAGTGCCTGCAAACAATCAGTAGCCGGTGAGAATGTTCACGATCACACCGCTGGCAAt < 2:133426/148‑1 (MQ=255) cAATTTCACGGGGTCTGGCCTATCACCTATTTTGTGAACCTACAA‑‑GGTGTAATTCGCCAGACACTAAAAAGCCCGCTGCTGCGGGCTTTTTAGTGCCTGCAAACAATCAGTAGCCGGTGAGAATGTTCACGATCACACCGCTGGCAATg > 1:69884/1‑149 (MQ=255) aTTTCACGGGGTCTGGCCTATCACCTATTTTGTGAACCTACTA‑‑GGTGTAATTCGCCAGACACTAAAAAGCCCGCTGCTGCGGGCTTTTTAGTGCCTGCAAACAATCAGTAGCCGGTGAGAATGTTCACGATCACACCGCTGGCAATGGc < 5:340842/149‑1 (MQ=255) aTTTCACGGGGTCTGGCCTATCACCTATTTTGTGAACCTACAA‑‑GGTGTAATTCGCCAGACACTAAAAAGCCCGCTGCTGCGGGCTTTTTAGTGCCTGCAAACAATCAGTAGCCGGTGAGAATGTTCACGATCACACCGCTGGCAATGGc < 2:142941/149‑1 (MQ=255) cACGGGGTCTGGCCTATCACCTATTTTGTGAACCTACAA‑‑GGTGTAATTCGCCAGACACTAAAAAGCCCGCTGCTGCGGGCTTTTTAGTGCCTGCAAACAATCAGTAGCCGGTGAGAATGTTCACGATCACACCGCTGGCAATGGccac < 2:239673/148‑1 (MQ=255) gggTCTGGCCTATCACCTATTTTGTGAACCTACAA‑‑GGTGTAATTCGCCAGACACTAAAAAGCCCGCTGCTGCGGGCTTTTTAGTGCCTGCAAACAATCAGTAGCCGGTGAGAATGTTCACGATCACACCGCTGGCAATGGCCACCAGaa < 6:220285/149‑1 (MQ=255) ggCCTATCACCTATTTTGTGAACCTACAA‑‑GGTGTAATTCGCCAGACACTAAAAAGCCCGCTGCTGCGGGCTTTTTAGTGCCTGCAAACAATCAGTAGCCGGTGAGAATGTTCACGATCACACCGCTGGCAATGGccac < 2:331915/138‑1 (MQ=255) ggCCTATCACCTATTTTGTGAACCTACAA‑‑GGTGTAATTCGCCAGACACTAAAAAGCCCGCTGCTGCGGGCTTTTTAGTGCCTGCAAACAATCAGTAGCCGGTGAGAATGTTCACGATCACACCGCTGGCAATGGccac > 1:331915/1‑138 (MQ=255) tATCACCTATTTTGTGAACCTACAA‑‑GGTGTAATTCGCCAGACACTAAAAAGCCCGCTGCTGCGGGCTTTTTAGTGCCTGCAAACAATCAGTAGCCGGTGAGAATGTTCACGATCACACCGCTGGCAATGGCCACCAGAACATAGTC‑Gc > 2:345786/1‑148 (MQ=255) cACCTATTTTGTGAACCTACAA‑‑GGTGTAATTCGCCAGACACTAAAAAGCCCGCTGCTGCGGGCTTTTTAGTGCCTGCAAACAATCAGTa > 8:233981/1‑89 (MQ=255) cACCTATTTTGTGAACCTACAA‑‑GGTGTAATTCGCCAGACACTAAAAAGCCCGCTGCTGCGGGCTTTTTAGTGCCTGCAAACAATCAGTa < 7:233981/89‑1 (MQ=255) aCCTATTTTGTGAACCTACAA‑‑GGTGTAATTCGCCAGACACTAAAAAGCCCGCTGCTGCGGGCTTTTTAGTGCCTGCAAACAATCAGTAGCCGGTGAGAATGTTCACGATCACACCGCTGGCAATGGCCACCAGAACATAGTC‑GCCATTc < 6:333877/149‑1 (MQ=255) cTATTTTGTGAACCTACAA‑‑GGTGTAATTCGCCAGACACTAAAAAGCCCGCTGCTGCGGGCTTTTTAGTGCCTGCAAACAATAAGTAGCCGTTGAGAATGTTCACGATCACACCGCTGGCAATGGCCACCAGAACATAGTC‑GCCATTca > 6:116620/1‑148 (MQ=255) gtgAACCTACAA‑‑GGTGTAATTCGCCAGACACTAAAAAGCCCGCTGCTGCGGGCTTTTTAGTGCCTGCAAACAATCAGTAGCCGGTGAGAATGTTCACGATCACACCGCTGGCAATGGCCACCAGAACATAGTC‑GCCATTCACATACAg < 4:76043/148‑1 (MQ=255) gAACCTACAA‑‑GGTGTAATTCGCCAGACACTAAAAAGCCCGCTGCTGCGGGCTTTTTAGTGCCTGCAAACAATCAGTAGCCGGTGAGAATGTTCACGATCACACCGCTGGCAATGGccac < 6:239502/119‑1 (MQ=255) gAACCTACAA‑‑GGTGTAATTCGCCAGACACTAAAAAGCCCGCTGCTGCGGGCTTTTTAGTGCCTGCAAACAATCAGTAGCCGGTGAGAATGTTCACGATCACACCGCTGGCAATGGccac > 5:239502/1‑119 (MQ=255) aaCCTACAA‑‑GGTGTAATTCGCCAGACACTAAAAAGCCCGCTGCTGCGGGCTTTTTAGTGCCTGCAAACAATCAGTAGCCGGTga < 8:71881/84‑1 (MQ=255) aaCCTACAA‑‑GGTGTAATTCGCCAGACACTAAAAAGCCCGCTGCTGCGGGCTTTTTAGTGCCTGCAAACAATCAGTAGCCGGTga > 7:71881/1‑84 (MQ=255) ccTACAA‑‑GGTGTAATTCGCCAGACACTAAAAAGCCCGCTGCTGCGGGCTTTTTAGTGCCTGCAAACAATCAGTAGCCGGTGAGAATGTTCACGATCACACCGCTGGCAATGGCCACCAGAACATAGTC‑GCCATTCACATACAGCCAAc > 1:307123/1‑148 (MQ=255) ccTACAA‑‑GGTGTAATTCGCCAGACACTAAAAAGCCCGCTGCTGCGGGCTTTTTAGAGCCTGCAAACAATCAGTAGCCGGTGACAATGTTCACGATCACACACCTGGCAATGGCCACCAGAACAAAGTC‑GCCATTCAAATACAGCCAAc > 5:144234/1‑148 (MQ=255) ggTGTAATTCGCCAGACACTAAAAAGCCCGCTGCTGCGGGCTTTTTAGTGCCTGCAAACAATCAGTAGCCGGTGAGAATGTTCACGATCACACCGCTGGCAATGGCCACCAGAACATAGTC‑GCCATTCACATACAGCCaa < 7:199578/140‑1 (MQ=255) ggTGTAATTCGCCAGACACTAAAAAGCCCGCTGCTGCGGGCTTTTTAGTGCCTGCAAACAATCAGTAGCCGGTGAGAATGTTCACGATCACACCGCTGGCAATGGCCACCAGAACATAGTC‑GCCATTCACATACAGCCaa > 8:199578/1‑140 (MQ=255) tgtAATTCGCCAGACACTAAAAAGCCCGCTGCTGCGGGCTTTTTAGTGCCTGCAAACAATCAGTAGCCGGTGAGAATGTTCACGATCACACCGCTGGCAATGGCCACCAGAACATAGTCAGCCATTCACATACAGCCAACGATGATCa < 1:21317/148‑1 (MQ=255) tgtAATTCGCCAGACACTAAAAAGCCCGCTGCTGCGGGAATTTTAGTGCCTCCAAACAATCAGTAGCCGGTGAGAATGTTCACGATCACACCCCTCTCAATGGCCACCAGAACATACTC‑GCCATTCACATACAGCCAACGATGATAACg > 8:42429/1‑149 (MQ=255) tAATTCGCCAGACACTAAAAAGCCCGCTGCTGCGGGCTTTTTAGTGCCTGCAAACAATCAGTAGCCGGTGAGAATGTTCACGATCACACCGCTGGCAATGGCCACCAGAACATAGTC‑GCCATTCACATACAGCCAACGATGATCACGa < 7:91956/148‑1 (MQ=255) aaTTCGCCAGACACTAAAAAGCCCGCTGCTGCGGGCTTTTTAGTGCCTGCAAACAATCAGTAGCCGGTGAGAATGTTCACGATCACACCGCTGGCAATGGCCACCAGAACATAGTC‑GCCATTCACATACAGCCAACGATGATCACGAgg > 1:119891/1‑149 (MQ=255) gCCCGACCCTAACACCCCCGCGGCTGCGGGCTTTTTAGTGCCTGCAAACAATCAGTAGCCGGTGAGAATGTTCACGATCACACCGCTGGCAATGGCCACCAGAACATAGTC‑GCCATTCACATACAGCCAACGATGATCACGAGGTGgc < 2:280068/148‑1 (MQ=255) gCCAGACACTAAAAAGCCCGCTGCTGCGGGCTTTTTAGTGCCTGCAAACAATCAGTAGCCGGTGAGAATGTTCACGATCACACCGCTGGCAATGGCCACCAGAACATAGTC‑GCCATTCACATACAGCCAACGATGATCACGAGGTGgcg < 2:69884/149‑1 (MQ=255) cAGACACTAAAAAGCCCGCTGCTGCGGGCTTTTTAGTGCCTGCAAACAATCAGTAGCCGGTGAGAATGTTCACGATCACACCGCTGGCAATGGCCACCAGAACATAGTC‑GCCATTCACATACAGCCAACGATGATCACGAGGTGGCGCa > 6:53450/1‑149 (MQ=255) gcacTAAAAAGCCCGCAGCAGCGGGCTTTTTAGTGCCTGCAAACAATCAGTAGCCGGTGAGAATGTTCACGATCACACCGCTGGCAATGGCCACCAGaa > 6:67669/2‑99 (MQ=255) gcacTAAAAAGCCCGCAGCAGCGGGCTTTTTAGTGCCTGCAAACAATCAGTAGCCGGTGAGAATGTTCACGATCACACCGCTGGCAATGGCCACCAGaa < 5:67669/98‑1 (MQ=255) acTAAAAAGCCCGCTGCTGCGGGCTTTTTAGTGCCTGCAAACAATCAGTAGCCGGTGAGAAGGTTCACGATCACACCGATGGCAATGGCCACCAGAACATAGTC‑GGCATTCACATACAGCCAACGATGATCACGAGGTGGAGCATACAg > 3:18251/1‑149 (MQ=255) cTAAAAAGCCCGCAGCAGCGGGCTTTTTAGTGCCTGCAAACAATCAGTAGCCGGTGAGAATGTTCACGATCACACCGCTGGCAATGGCCACCAGAACATAGTC‑GCCATTCACATACAGCCAACGATGATCACGAGGTGGCGCATACAgg > 6:323705/1‑149 (MQ=255) tAAAAAGCCCGCTGCTGCGGGCTTTTTAGTGCCTGCAAACAATCAGTAGCCGGTGAGAATGTTCACGATCACACCGCTGGCAATGGCCACCAGAACATAGTC‑GCCATTCACATACAGCCAACGATGATCACGAGGTGGCGCATACAGGt > 4:160262/1‑149 (MQ=255) tAAAAAGCCCGCTGCTGCGGGCTTTTTAGTGCCTGCAAACAATCAGTAGCCGGTGAGAATGTTCACGATCACACCGCTGGCAATGGCCACCAGAACATAGTC‑GCCATTCACATACAGCCAACGATGATCACGAGGTGGCGCATACAGGt > 3:334995/1‑149 (MQ=255) tAAAAAGCCCGCAGCAGCGGGCTTTTTAGTGTCTGCAAACAATCAGTAGCCGGTGAGAATGTTCACGATCACACCGCTGGCAATGGCCACCAGAAAATAGTC‑GCCAGTCACATACAGCCAACGATGATCACGAGGTGGCGCATACAGGt > 1:247227/1‑149 (MQ=39) aaaaaGCCCGCTGCTGCGGGCTTTTTAGTGCCTGCAAACAATCAGTAGCCGGTGAGAATGTTCACGATCACACCGCTGGCAATGGCCACCAGAACATAGTC‑GCCATTCACATACAGCCAACGATGATCACGAGGTGGCGGATACAGGTg > 7:277938/1‑149 (MQ=255) aaaaGCCCGCTGCTGCGGGCTTTTTAGTGCCTGCAAACAATCAGTAGCCGGTGAGAATGTTCACGATCACACCGCTGGCAATGGCCACCAGAACATAGTC‑GCCATTCACATACAGCCAACGATGATCACGAGGTGGCGCATACAg < 8:197712/145‑1 (MQ=255) aaaaGCCCGCTGCTGCGGGCTTTTTAGTGCCTGCAAACAATCAGTAGCCGGTGAGAATGTTCACGATCACACCGCTGGCAATGGCCACCAGAACATAGTC‑GCCATTCACATACAGCCAACGATGATCACGAGGTGGCGCATACAg > 7:197712/1‑145 (MQ=255) aaaaGCCCGCAGCAGCGGGCTTTTTAGTGCCTGCAAACAATCAGTAGCCGGTGAGAATGTTCACGATCACACCGCTGGCAATGGCCACCAGAACATAGTC‑GCCATTCACATACAGCCAACGATGATCACGAGGTGGCGCATACAGGTgg > 3:20443/1‑149 (MQ=255) aaaaGCCCGCAGCAGCGGGCTTTTTAGTGCCTGCAAACAATCAGTAGCCGGTGAGAATGTTCACGATCACACCGCTGGCAATGGCCACCAGAACATAGTC‑GCCATTCACATACAGCCAACGATGATCACGAGGTGGCGCATACAGGTgg > 6:49115/1‑149 (MQ=255) aGCCCGCTGCTGCGGGCTTTTTAGTGCCTGCAAACAATCAGTAGCCGGTGAGAATGTTCACGATCACACCGCTGGCAATGGCCACCAGAACATAGTC‑GCCATTCACATACAGCCAACGATGATCACGAGGTGGCGCATACAGGTGgcgc < 4:334995/149‑1 (MQ=255) cccGCTGCTGCGGGCTTTTTAGTGCCTGCAAACAATCAGTAGCCGGTGAGAATGTTCACGATCACACCGCTGGCAATGGCCACCAGAACATAGTC‑GCCATTca > 6:70191/1‑103 (MQ=255) | TGAGTAGGGATTTCTCGGCTTTTCTGTGAAAAGCACCCCTTCATTTCACAAAAAAAATGGCGAAGATTCCAATTTCACGGGGTCTGGCCTATCACCTATTTTGTGAACCTACAA‑‑GGTGTAATTCGCCAGACACTAAAAAGCCCGCTGCTGCGGGCTTTTTAGTGCCTGCAAACAATCAGTAGCCGGTGAGAATGTTCACGATCACACCGCTGGCAATGGCCACCAGAACATAGTC‑GCCATTCACATACAGCCAACGATGATCACGAGGTGGCGCATACAGGTGGCGC > NC_002947/58602‑58888 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |