Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 4,502,239 | G→A | 8.2% | intergenic (+31/‑133) | yccA → / → xanP | FtsH‑mediated proteolysis substrate/modulator/xanthine permease |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 4,502,239 | 0 | G | A | 8.2% | 168.7 / 4.4 | 61 | intergenic (+31/‑133) | yccA/xanP | FtsH‑mediated proteolysis substrate/modulator/xanthine permease |
Reads supporting (aligned to +/- strand): ref base G (29/27); new base A (2/3); total (31/30) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 6.71e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.19e-01 |
ATTCATGGTGGCGAACGTAACTACATCATGGCAACCATCAGCCTGTATGTGTCGATCTACAACCTGTTTGTCAGCCTGCTGCAATTGTTTGGCATCATGGGTCGTGACGACTGATTG‑ATTGCTGTACCGCAAGAAGCCCGCTTCGGCGGGCTTTTTTGTGGGCGCTGGAAATGGGTTGAGCTGCAGGATGCTCGTGCCGTCATCCCGTTTTCTCTACCGCTATCCGCCATCACCCCGTAGAATGCGCTCCTTTTTTCTTCCGGGGCGGCTTTCAGCAATGAGCTCACAC > NC_002947/4502095‑4502383 | attcatGGTGGCGAACGTAACTACATCATGGCAACCATCAGCCTGTATGTGTCGATCTACAACCTGTTTGTCAGCCTGCTGCAATTGTTTGGCATCATGGGTCGTGACGACTGATTG‑ATTGCTGTACCGCAAGAAGCCCGCTTcggcgg < 5:328504/149‑1 (MQ=255) atGGTGGCGAACGTAACTACATCATGGCAACCATCAGCCTGTATGTGTCGATCTACAACCTGTTTGTCAGCCTGCTGCAATTGTTTGGCATCATGGGTCGTGACGACTGATTG‑ATTGCTGTACCGCAAGAAGCCCGCTTCGGCGGGCtt > 2:48862/1‑149 (MQ=255) gtggCGAACGTAACTACATCATGGCAACCATCAGCCTGTATGTGTCGATCTACAACCTGTTTGTCAGCCTGCTGCAATTGTTTGGCATCATGGGTCGTGACGACTGATTG‑ATTGCTGTACCGCAAGAAGCCCGCTTCGGCGGGCtttt < 3:284032/148‑1 (MQ=255) gtggCGAACGTAACTACATCATGGCAACCATCAGCCTGTATGTGTCGATCTACAACCTGGTTGTCAGCCTGCTGCAATTGTTTGGCATCATGGGTCGTGACGACTGATTGAATTGCTGTACCGCAAGAAGCCCGCCGAAGCGGGCttc < 1:62073/148‑2 (MQ=255) cGAACGTAACTACATCATGGCAACCATCAGCCTGTATGTGTCGATCTACAACCTGTTTGTCAGCCTGCTGCAATTGTTTGGCATCATGGGTCGTGACGACTGATTG‑ATTGCTGTACCGCAAGAAGCCCGCTTCGGCGGGCTTTTTtgtg < 2:61097/149‑1 (MQ=255) cGAACGTAACTACATCATGGCAACCATCAGCCTGTATGTGTCGATCTACAACCTGTTTGTCAGCCTGCTGCAATTGTTTGGCATCATGGGTCGTGACGACTGATTG‑ATTGCTGTACCGCAAGAAGCCCGCTTCGGCGGGCTTTTTtgtg < 2:111134/149‑1 (MQ=255) tACATCATGGCAACCATCAGCCTGTATGTGTCGATCTACAACCTGTTTGTCAGCCTGCTGCAATTGTTTGGCATCATGGGTCGTGACGACTGATTG‑ATTGCTGTACCGCAAGAAGCCCGCCGAAGCGGGCttc > 5:285498/1‑132 (MQ=255) tACATCATGGCAACCATCAGCCTGTATGTGTCGATCTACAACCTGTTTGTCAGCCTGCTGCAATTGTTTGGCATCATGGGTCGTGACGACTGATTG‑ATTGCTGTACCGCAAGAAGCCCGCCGAAGCGGGCttc < 6:285498/133‑2 (MQ=255) tcatGGCAACCATCAGCCTGTATGTGTCGATCTACAACCTGTTTGTCAGCCTGCTGCAATTGTTTGGCATCATGGGTCGTGACGACTGATTG‑ATTGATGTACCGCAAGAACCCCGCTTCGGCGGGCTTTTTTGTGGGCGCTGGAAATgg > 3:13851/1‑149 (MQ=255) atGGCAACCATCAGCCTGTATGTGTCGATCTACAACCTGTTTGTCAGCCTGCTGCAATTGTTTGGCATCATGGGTCGTGACGACTGATTG‑ATTGCTGTACCGCAAGAAGCCCGCTTCGGCGGGCTTTTTTGTGGGCGCTGGAAATggg < 3:328993/148‑1 (MQ=255) tGGCAACCATCAGCCTGTATGTGTCGATCTACAACCTGTTTGTCAGCCTGCTGCAATTGTTTGGCATCATGGGTCGTGACGACTGATTG‑ATTGCTGTACCGCAAGAAGCCCGCTTCGGCGGGCTTTTTTGTGGGCGCTGGAAATGGGtt > 1:173226/1‑149 (MQ=255) tGGCAACCATCAGCCTGTATGTGGCGATCTACAACCTGTTTGTCAGCCTGCTGCAATTGTTTGGCATCATGGGTCGTGACGAGTGATTG‑ATTGCTGTACCGCAAGAAGCCCGCTTCGGCGGGCTTTTTTGTGGGCGCTGGAAATGGGtt < 1:165165/149‑1 (MQ=255) gCAACCATCAGCCTGTATGTGTCGATCTACAACCTGTTTGTCAGCCTGCTGCAATTGTTTGGCATCATGGGTCGTGACGACTGATTG‑ATTGCTGTACCGCAAAAAGCCCGCCGAAGCGGGcttcttg > 5:247669/1‑126 (MQ=255) gCAACCATCAGCCTGTATGTGTCGATCTACAACCTGTTTGTCAGCCTGCTGCAATTGTTTGGCATCATGGGTCGTGACGACTGATTG‑ATTGCTGTACCGCAAAAAGCCCGCCGAAGCGGGcttcttg < 6:247669/127‑2 (MQ=255) aGCCTGTATGTGTCGATCTACAACCTGTTTGTCAGCCTGCTGCAATTGTTTGGCATCATGGGTCGTGACGACTGATTG‑ATTGCTGTACCGCAAGAAGCCCGCTTCGGCGGGCTTTTTTGTGGGCGCTGGAAATGGGTTGAGCTGCAgg < 7:173526/148‑1 (MQ=255) ccTGTATGTGTCGATCTACAACCTGTTTGTCAGCCTGCTGCAATTGTTTGGCATCATGGGTCGTGACGACTGATTG‑ATTGCTGTACCGCAAGAAGCCCGCTTCGGCGGGCTTTTTtgt > 5:326829/1‑118 (MQ=255) ccTGTATGTGTCGATCTACAACCTGTTTGTCAGCCTGCTGCAATTGTTTGGCATCATGGGTCGTGACGACTGATTG‑ATTGCTGTACCGCAAGAAGCCCGCTTCGGCGGGCTTTTTtgt < 6:326829/118‑1 (MQ=255) ccTGTATGTGTCGATCTACAACCTGTTTGTCAGCCTGCTGCAATTGTTTGGCATCATGGGTCGTGACGACTGATTG‑ATTGCTGTACCGCAAGAAGCCCGCTTCGGCGGGCTTTTTtgt < 6:331725/118‑1 (MQ=255) ccTGTATGTGTCGATCTACAACCTGTTTGTCAGCCTGCTGCAATTGTTTGGCATCATGGGTCGTGACGACTGATTG‑ATTGCTGTACCGCAAGAAGCCCGCTTCGGCGGGCTTTTTtgt > 5:331725/1‑118 (MQ=255) tCGATCTACAACCTGTTTGTCAGCCTGCTGCAATTGTTTGGCATCATGGGTCGTGACGACTGATTG‑ATTGCTGTACCGCAAGAAGCCCGCTTCGGCGGGCTTTTTTGTGGGCGCTGGAAATGGGTTGAGCTGCAGGATGCTCGTGCCGt > 2:193818/1‑149 (MQ=255) cTACAACCTGTTTGTCAGCCTGCTGCAATTGTTTGGCATCATGGGTCGTGACGACTGATTG‑ATTGCTGTACCGCAAGAAGCCCGCTTCGGCGGGCTTTTTTGTGGGCGCTGGAAATGGGTTGAGCTGCAGGATGCTCGTGCCGTCATcc > 2:227980/1‑149 (MQ=255) aCAACCTGTTTGTCAGCCTGCTGCAATTGTTTGGCATCATGGGTCGTGACGACTGATTG‑ATTGCTGTACCGCAAGAAGCCCGCTTCGGCGGGCTTTTTTGTGGGCGCTGGAAATGGGTTGAGCTGCAGGATGCTCGTGCCGTCATCCCg > 4:102446/1‑149 (MQ=255) aCAACCTGTTTGTCAGCCTGCTGCAATTGTTTGGCATCATGGGTCGTGACGACTGATTG‑ATTGCTGTACCGCAAGAAGCCCGCTTCGGCGGGCTTTTTTGTGGGCGCTGGAAATGGGTTGAGCTGCAGGATGCTCGTGCCGTCATCCCg > 2:248432/1‑149 (MQ=255) cTGTTTGTCAGCCTGCTGCAATTGTTTGGCATCATGGGTCGTGACGACTGATTG‑ATTGCTGTACCGCAAGAAGCCCGCTTCGGCGGGCTTTTTTGTGGGCGCTGGAAATGGGTTGAGCTGGAGGATGCTCGTGCCGTCATCCCGTTTtc < 1:193818/149‑1 (MQ=255) tttGTCAGCCTGCTGCAATTGTTTGGCATCATGGGTCGTGACGACTGATTG‑ATTGCTGTACCGCAAGAAGCCCGCTTCGGCGGGCTTTTTTGTGGGCGCTGGAAATGGGTTGAGCTGCAGGATGCTCGTGCCGTCATCCCGTTTtctc > 5:2672/1‑148 (MQ=255) ccTGCTGCAATTGTTTGGCATCATGGGTCGTGACGACTGATTG‑ATTGCTGTACCGCAAGAAGCCCGCTTCGGCGGGCTTTTTTGTGGGCGCTGGAAATGGGTTGAGCTGCAGGATGCTCGTGCCGTCATCCCGTTTTCTCTACCTCTa > 2:334904/1‑148 (MQ=255) ctgcAATTGTTTGGCATCATGGGTCGTGACGACTGATTG‑ATTGCTGTACCGCAAGAAGCCCGCTTCGGCGGGCTTTTTTGTGGGCGCTGGAAATGGGTTGAGCTGCAGGATGCTCGTGCCGTCATCCCGTTTTCTCTACCGCTATCCGc < 2:173226/149‑1 (MQ=255) tgcAATTGTTTGGCATCATGGGTCGTGACGACTGATTG‑ATTGCTGTACCGCAAGAAGCCCGCTTCGGCGGGCTTTTTTGTGGGCGCTGGAAATGGGTTGAGCTGCAGGATGCTCGTGCCGTCATCCCGTTTTCTCTACCGCTATCCGc > 2:178381/1‑148 (MQ=255) cAATTGTTTGGCATCTTGGGTCGTGACGACTGATTG‑ATTGCTGTACCGCAAGAAGCCCGCTTCGGCGGGCTTTTTTGTGGGCGCTGGAAATGGGTTGAGCTGCAGGATGCTCGTGCCGTCATCCCGTTTTCTCTACCGCTATCCGcc < 2:196534/147‑1 (MQ=255) cAATTGTTTGGCATCTTGGGTCGTGACGACTGATTG‑ATTGCTGTACCGCAAGAAGCCCGCTTCGGCGGGCTTTTTTGTGGGCGCTGGAAATGGGTTGAGCTGCAGGATGCTCGTGCCGTCATCCCGTTTTCTCTACCGCTATCCGcc > 1:196534/1‑147 (MQ=255) cAATTGTTTGGCATCATGGGTCGTGACGACTGATTG‑ATTGCTGTACCGCAAGAAGCCCGCTTCGGCGGGCTTTTTTGTGGGCGCTGGAAATGGGTTGAGCTGCAGGATGCTCGTGCCGTCATCCCGTTTTCTCTACCGCTATCCGCCa > 1:96422/1‑148 (MQ=255) cAATTGTTTGGCATCATGGGTCGTGACGACTGATTG‑ATTGCTGTACCGCAAGAAGCCCGCTTCGGCGGGCTTTTTTGTGGGCGCTGGAAATGGGTTGAGCTGCAGGATGCTCGTGCCGTCATCCCGTTTTCTCTACCGCTATCCGCCAt < 6:2672/149‑1 (MQ=255) aTTGTTTGGCATCATGGGTCGTGACGACTGATTG‑ATTGCTGTACCGCAAGAAGCCCGCTTCGGCGGGCTTTTTTGTGGGCGCTGGAAATGGGTTGAGCTGCAGGATGCTCGTGCCGTCATCCCGTTTTCTCTACCGCTATCCGCCATCa < 7:226141/149‑1 (MQ=255) tGTTTGGCATCATGGGTCGTGACGACTGATTG‑ATTGCTGTACCGCAAGAAGCCCGCTTCGGCGGGCTTTTTTGTGGGCGCTGGAAATgg < 2:166982/89‑1 (MQ=255) tGTTTGGCATCATGGGTCGTGACGACTGATTG‑ATTGCTGTACCGCAAGAAGCCCGCTTCGGCGGGCTTTTTTGTGGGCGCTGGAAATgg > 1:166982/1‑89 (MQ=255) gTTTGGCATCATGGGTCGTGACGACTGATTG‑ATTGCTGTACCGCAAGAAGCCCGCTTCGGCGGGCTTTTTTGTGGGCGCTGGAAATGGGTTGAGCTGCAGGATGCTCGTGCCGTCATCCCGTTTTCTCTACAGCTATCCGCCATCAccc > 4:295842/1‑149 (MQ=255) tttGGCATCATGGGTCGTGACGACTGATTG‑ATTGCTGTACCGCAAGAAGCCCGCTTCGGCGGGCTTTTTTGTGGGCGCTGGAAATGGGTTGAGCTGCAGGATGCTCGTGCCGTCATCCCGTTTTCTCTACCGCTATCCGCCATCAcccc > 1:13336/1‑149 (MQ=255) ggCATCATGGGTCGTGACGACTGATTG‑ATTGCTGTACCGCAAGAAGCCCGCTTCGGCGGGCTTTTTTGTGGGCGCTGGAAATGGGTTGAGCTGCAGGATGCTCGTGCCGTCATCCCGTTTTCTCTACCGCTATCCGCCATCACCCCGt < 1:248432/148‑1 (MQ=255) gCATCATGGGTCGTGACGACTGATTG‑ATTGCTGTACCGCAAGAAGCCCGCTTCGGCGGGCTTTTTTGTGGGCGCTGGAAATGGGTTGAGCTGCAGGATGCTCGTGCCGTCATCCCGTTTTCTCTACCGCTATCCGCCATCACCCCg > 8:23544/1‑146 (MQ=255) gCATCATGGGTCGTGACGACTGATTG‑ATTGCTGTACCGCAAGAAGCCCGCTTCGGCGGGCTTTTTTGTGGGCGCTGGAAATGGGTTGAGCTGCAGGATGCTCGTGCCGTCATCCCGTTTTCTCTACCGCTATCCGCCATCACCCCGTa < 1:48862/148‑1 (MQ=255) catcatGGGTCGTGACGACTGATTG‑ATTGCTGTACCGCAAGAAGCCCGCTTCGGCGGGCTTTTTTGTGGGCGCTGGAAATGGGTTGAGCTGCAGGATGCTCGTGCCGTCATCCCGTTTtc < 8:90446/120‑1 (MQ=255) catcatGGGTCGTGACGACTGATTG‑ATTGCTGTACCGCAAGAAGCCCGCTTCGGCGGGCTTTTTTGTGGGCGCTGGAAATGGGTTGAGCTGCAGGATGCTCGTGCCGTCATCCCGTTTtc > 7:90446/1‑120 (MQ=255) atcatGGGTCGTGACGACTGATTG‑ATTGCTGTACCGCAAGAAGCCCGCTTCGGCGGGCTTTTTTGTGGGCGCTGGAAATGGGTTGAGCTGCAGGATGCTCGTGCCGTCATCCCGTTTTCTCTACCGCTATCCGCCATCACCCCGTAGaa > 3:59928/1‑149 (MQ=255) gTCGTGACGACTGATTG‑ATTGCTGTACCGCAAGAAGCCCGCTTCGGCGGGCTTTTTTGTGGGCGCTGGAAATGGGTTGAGCTGCAGGATGCTCGTGCCGTCATCCCGTTTTCTCTACCGCTATCCGCCATCACCCCGTAGAATGCGCTc > 1:101861/1‑149 (MQ=255) tGACGACTGATTG‑ATTGCTGTACCGCAAGAAGCCCGCTTCGGCGGGCTTTTTTGTGGGCGCTGGAAATGGGTTGAGCTGCAGGATGCTCGTGCCGTCATCCCGTTTTCTCTACCGCTATCCGCCATCACCCCGTAGAATGCGCTCCttt > 8:61191/1‑149 (MQ=255) cgacTGATTG‑ATTGCTGTACCGCAAGAAGCCCGCTTCGGCGGGCTTTTTTGTGGGCGCTGGAAATGGGTTGAGCTGCAGGATGCTCGTGCCGTCATCCCGTTTTCTCTACCGCTATCCGCCATCACCCCGTAGAATGCGCTCCtttttt < 1:334904/149‑1 (MQ=255) acTGATTG‑ATTGCTGTACCGCAAGAAGCCCGCTTCGGCGGGCTTTTTTGTGGGCGCTGGAAATGGGTTGAGCTGCAGGATGCTCGTGCCGTCATCCCGTTTTCTCTACCGCTATCCGCCATCACCCCGTAGAATGCGCTCCTTTTttct > 8:203752/1‑149 (MQ=255) ttgCTGTACCGCAAGAAGCCCGCTTCGGCGGGCTTTTTTGTGGGCGCTGGAAATGGGTTGAGCTGCAGGATGCTCGTGCCGTCATCCCGTTTTCTCTACCGCTATCCGCCATCACCCCGTAGAATGCGCTCCTTTTTTCTTCCGGggc < 4:59928/148‑1 (MQ=255) gCTGTACCGCAAGAAGCCCGCTTCGGCGGGCTTTTTTGTGGGCGCTGGAAATGGGTTGAGCTGCAGGATGCTCGTGCCGTCATCCCGTTTTCTCTACCGCTATCCGCCATCACCCCGTAGAATGCGCTCCTTTTTTCTTCCGGggcgg < 2:101861/148‑1 (MQ=255) tGTACCGCAAGAAGCCCGCTTCGGCGGGCTTTTTTGTGGGCGCTGGAAATGGGTTGAGCTGCAGGATGCTCGTGCCGTCATCCCGTTTTCTCTACCGCTATCCGCCATCACCCCGTAGAATGCGCTCCTTTTTTCTTCCGGggc < 8:240557/144‑1 (MQ=255) tGTACCGCAAGAAGCCCGCTTCGGCGGGCTTTTTTGTGGGCGCTGGAAATGGGTTGAGCTGCAGGATGCTCGTGCCGTCATCCCGTTTTCTCTACCGCTATCCGCCATCACCCCGTAGAATGCGCTCCTTTTTTCTTCCGGggc > 7:240557/1‑144 (MQ=255) tACCGCAAGAAGCCCGCTTCGGCGGGCTTTTTTGTGGGCGCTGGAAATGGGTTGAGCTGCAGGATGCTCGTGCCGTCATCCCGTTTTCTCTACCGCTATCCGCCATCACCCCGTAGAATGCGCTCCTTTTTTCTTCCGGGGCGGCttt < 7:61191/148‑1 (MQ=255) ccGCAAGAAGCCCGCTTCGGCGGGCTTTTTTGTGGGCGCTGGAAATGGGTTGAGCTGCAGGATGCTCGTGCCGTCATCCCGTTTTCTCTACCGCTATCCGCCATCACCCCGTAGAATGCGCTCCTTTTTTCTTCCGGGGCGGCTTTCAg < 2:96422/149‑1 (MQ=255) cAAGAAGCCCGCTTCGGCGGGCTTTTTTGTGGGCGCTGGAAATGGGTTGAGCTGCAGGATGCTCGTGCCGTCATCCCGTTTTCTCTACCGCTATCCGCCATCACCCCGTAGAATGCGCTCCTTTTTTCTTCCGGGGCGGCTTTCAGCaa > 3:256874/1‑149 (MQ=255) aagaagCCCGCTTCGGCGGGCTTTTTTGTGGGCGCTGGAAATGGGTTGAGCTGCAGGATGCTCGTGCCGTCATCCCGTTTTCTCTACCGCTATCCGCCATCACCCCGTAGAATGCGCTCCTTTTTTCTTCCGGGGCGGCTTTCAGCAAt > 3:163080/1‑149 (MQ=255) gaagCCCGCTTCGGCGGGCTTTTTTGTGGGCGCTGGAAATGGGTTGAGCTGCAGGATGCTCGTGCCGTCATCCCGTTTTCTCTACCGCTATCCGCCATCACCCCGTAGAATGCGCTCCTTTTTTCTTCCGGGGCGGCTTTCAGCAATGa < 1:227980/149‑1 (MQ=255) agCCCGCTTCGGCGGGCTTTTTTGTGGGCGCTGGAAATGGGTTGAGCTGCAGGATGCTCGTGCCGTCATCCCGTTTTCTCTACCGCTATCCGCCATCACCCCGTAGAATGCGCTCCTTTTTTCTTCCGGGGCGGCTTTCAGCAATGAGc > 5:352725/1‑149 (MQ=255) ccGCTTCGGCGGGCTTTTTTGTGGGCGCTGGAAATGGGTTGAGCTGCAGGATGCTCGt < 1:342843/58‑1 (MQ=255) ccGCTTCGGCGGGCTTTTTTGTGGGCGCTGGAAATGGGTTGAGCTGCAGGATGCTCGt > 2:342843/1‑58 (MQ=255) cGCTTCGGCGGGCTTTTTTGTGGGCGCTGGAAATGGGTTGAGCTGCAGGATGCTCGTGCCGTCATCCCGTTTTCTCTACCGCTATcc < 1:98533/87‑1 (MQ=255) cGCTTCGGCGGGCTTTTTTGTGGGCGCTGGAAATGGGTTGAGCTGCAGGATGCTCGTGCCGTCATCCCGTTTTCTCTACCGCTATcc > 2:98533/1‑87 (MQ=255) cTTCGGCGGGCTTTTTTGTGGGCGCTGGAAATGGGTTGAGCTGCAGGATGCTCGTGCCGTCATCCCGTTTTCTCTACCGCTATCCGCCATCACCCCGTAGAATGCGCTCCTTTTTTCTTCCGGGGCGGCTTTCAGCAATGAGCTCacac < 7:203752/149‑1 (MQ=255) | ATTCATGGTGGCGAACGTAACTACATCATGGCAACCATCAGCCTGTATGTGTCGATCTACAACCTGTTTGTCAGCCTGCTGCAATTGTTTGGCATCATGGGTCGTGACGACTGATTG‑ATTGCTGTACCGCAAGAAGCCCGCTTCGGCGGGCTTTTTTGTGGGCGCTGGAAATGGGTTGAGCTGCAGGATGCTCGTGCCGTCATCCCGTTTTCTCTACCGCTATCCGCCATCACCCCGTAGAATGCGCTCCTTTTTTCTTCCGGGGCGGCTTTCAGCAATGAGCTCACAC > NC_002947/4502095‑4502383 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |