| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 4,634,356 | T→A | 10.7% | D252V (GAC→GTC) | uvrC ← | UvrABC system protein C |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 4,634,356 | 0 | T | A | 10.7% | 113.7 / 5.7 | 47 | D252V (GAC→GTC) | uvrC | UvrABC system protein C |
| Reads supporting (aligned to +/- strand): ref base T (21/20); new base A (2/3); total (24/23) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.08e-01 | |||||||||||
TGGGACAGGAATGCGGCCATGACCTCGGCCACCTCCTCCTCGATGCCCACCTGCGGGAAGAAGTTCTTGCTGCCCAGTACTCGCCCGCCGCGCACGCTGATCAGGTGCACACAGGCACCACCCGGGTTGACGAAGGCGGCGATGACGTCGACATCGCCGCTGCCGCCCTCGATGTACTGTTGGTCCTGCACGCGGCGCAACAAGGCGATCTGGTCGCGCAGCTCGGCGGCTTTTTCGAAATCGAGGGCCATGGCGGCCTTTTCCATCTCGGCGTTCAACTCATTGCCCAGTTGCTG > NC_002947/4634209‑4634504 | tGGGACAGGAATGCGGCCATGACCTCGGCCACCTCCTCCTCGATGCCCACCTGCGGGAAGAAGTTCTTGCTGCCCAGTACTCGCCCGCCGCGCACGCTGATCAGGTGCACACAGGCACCACCCGGGTTGACGAAGGCGGCGATGACGTc > 3:251092/1‑149 (MQ=255) ggACAGGAATGCGGCCATGACCTCGGCCACCTCCTCCTCGATGCCCACCTGCGGGAAGAAGTTCTTGCTGCCCAGTACTCGCCCGCCGCGCACGCTGATCAGGTGCACACAGGCACCACCCGGGTTGACGAAGGCGGCGATGACGTc < 1:196543/147‑1 (MQ=255) gAATGCGGCCATGACCTCGGCCACCTCCTCCTCGATGCCCACCTGCGGGAAGAAGTTCTTGCTGCCCAGTACTCGCCCGCCGCGCACGCTGATCAGGTGCACACAGGCACCACCCGGGTTGACGAAGGCGGCGATGTCGACGTCATcg > 1:322919/1‑148 (MQ=255) gAATGCGGCCATGACCTCGGCCACCTCCTCCTCGATGCCCACCTGCGGGAAGAAGTTCTTGCTGCCCAGTACTCGCCCGCCGCGCACGCTGATCAGGTGCACACAGGCACCACCCGGGTTGACGAAGGCGGCGATGTCGACGTCATcg < 2:322919/148‑1 (MQ=255) cGGCCATGACCTCGGCCACCTCCTCCTCGATGCCCACCTGCGGGAAGAAGTTCTTGCTGCCCAGTACTCGCCCGCCGCGCACGCTGATCAGGTGCACACAGGCACCACCCGGGTTGACGAAGGCGGCGATGTCGACGTCATcgccgcct < 7:216999/149‑3 (MQ=255) gCCATGACCTCGGCCACCTCCTCCTCGATGCCCACCTGCGGGAAGAAGTTCTTGCTGCCCAGTACTCGCCCGCCGCGCACGCTGATCAGGTGCACACAGGCACCACCCGGGTTGACGAAGGCGGCGATGACGTCGACATCGCCGCTgcc < 4:43019/149‑1 (MQ=255) ctcctcctcGATGCCCACCTGCGGGAAGAAGTTCTTGCTGCCCAGTACTCGCCCGCCGCGCACGCTGATCAGGTGCACACAGGCACCACCCGGGTTGACGAAGGCGGCGATGACGTCGACATCGCCGCTGCCGCCCTCGATGTACTGtt < 3:237654/149‑1 (MQ=255) tcctcctcGATGCCCACCTGCGGGAAGAAGTTCTTGCTGCCCAGTACTCGCCCGCCGCGCACGCTGATCAGGTGCACACAGGCACCACCCGGGTTGACGAAGGCGGCGATGACGTCGACATCGCCGCTGCCGCCCTCGATGTAc < 8:56934/144‑1 (MQ=255) tcctcctcGATGCCCACCTGCGGGAAGAAGTTCTTGCTGCCCAGTACTCGCCCGCCGCGCACGCTGATCAGGTGCACACAGGCACCACCCGGGTTGACGAAGGCGGCGATGACGTCGACATCGCCGCTGCCGCCCTCGATGTAc > 7:56934/1‑144 (MQ=255) cctcGATGCCCACCTGCGGGAAGAAGTTCTTGCTGCCCAGTACTCGCCCGCCGCGCACGCTGATCAGGTGCACACAGGCACCACCCGGGTTGACGAAGGCGGCGATGACGTCGACATCGCCGCTGCCGCCCTCGATGTACTGTTGGTcc > 7:63107/1‑149 (MQ=255) ctcGATGCCCACCTGCGGGAAGAAGTTCTTGCTGCCCAGTACTCGCCCGCCGCGCACGCTGATCAGGTGCACACAGGCACCACCCGGGTTGACGAAGGCGGCGATGACGTCGACATCGCCGCTGCCGCCCTCGATGTACTGTTGGTc < 5:262423/147‑1 (MQ=255) ccACCTGCGGGAAGAAGTTCTTGCTGCCCAGTACTCGCCCGCCGCGCACGCTGATCAGGTGCACACAGGCACCACCCGGGTTGACGAAGGCGGCGATGACGTCGACATCGCCGCTGCCGCCCTCGATGTACTGTTGGTCCt < 8:308151/141‑1 (MQ=255) ccACCTGCGGGAAGAAGTTCTTGCTGCCCAGTACTCGCCCGCCGCGCACGCTGATCAGGTGCACACAGGCACCACCCGGGTTGACGAAGGCGGCGATGACGTCGACATCGCCGCTGCCGCCCTCGATGTACTGTTGGTCCt > 7:308151/1‑141 (MQ=255) gggAAGAAGTTCTTGCTGCCCAGTACTCGCCCGCCGCGCACGCTGATCAGGTGCACACAGGCACCACCCGGGTTGACGAAGGCGGCGATGACGTCGACATCGCCGCTGCCGCCCTCGATGTACTGTTGGTCCTGCACGCGGCGcaacaa < 2:133699/149‑1 (MQ=255) gTTCTTGCTGCCCAGTACTCGCCCGCCGCGCACGCTGATCAGGTGCACACAGGCACCACCCGGGTTGACGATGGCGGCGATGACGGCGACATCGCCGCTGCCGCCCTCGATGTACGGTTGGTCCTGCGCGCGGCGGAACACGGCGctct > 8:285863/1‑149 (MQ=255) gTTCTTGCTGCCCAGTACTCGCCCGCCGCGCACGCTGATCAGGTGCACACAGGCACCACCCGGGTTGACGAAGGCGGCGATGTCGACGTCATcgccgc > 2:221393/1‑98 (MQ=255) gTTCTTGCTGCCCAGTACTCGCCCGCCGCGCACGCTGATCAGGTGCACACAGGCACCACCCGGGTTGACGAAGGCGGCGATGTCGACGTCATcgccgc < 1:221393/98‑1 (MQ=255) gTTCTTGCTGCCCAGTACTCGCCCGCCGCGCACGCTGATCAGGTGCACACAGGCACCACCCGGGTTGACGAAGGCGGCGATGACGTCGACATCGCCGCTGCCGCCCTCGATGTACTGTTGGTCCTGCACGCGGCGCAACAAGGCGATCt > 6:72977/1‑149 (MQ=255) cccAGTACTCGCCCGCCGCGCACGCTGATCAGGTGCACACAGGCACCACCCGGGTTGACGAAGGCGGCGATGACGTCGACATCGCCGCTGCCGCCCTCGATGTACTGTTGGTCCTGCACGCGGCGcaac < 3:51231/129‑1 (MQ=255) cccAGTACTCGCCCGCCGCGCACGCTGATCAGGTGCACACAGGCACCACCCGGGTTGACGAAGGCGGCGATGACGTCGACATCGCCGCTGCCGCCCTCGATGTACTGTTGGTCCTGCACGCGGCGcaac > 4:51231/1‑129 (MQ=255) tACTCGCCCGCCGCGCACGCTGATCAGGTGCACACAGGCACCACCCGGGTTGACGAAGGCGGCGATGACGTCGACATCGCCGCTGCCGCCCTCGATGTACTGTTGGTCCTGCACGCGGCGCAACAAGGCGATCTGGTCGCGCAGCTcgg > 2:312717/1‑149 (MQ=255) cTCGCCCGCCGCGCACGCTGATCAGGTGCACACAGGCACCACCCGGGTTGACGAAGGCGGCGATGACGTCGACATCGCCGCTGCCGCCCTCGATGTACTGTTGGTCCTGCACGCGGCGCAACAAGGCGATCTGGTCGCGCAGCTcggcg > 3:279925/1‑149 (MQ=255) gcccgccGCGCACGCTGATCAGGTGCACACAGGCACCACCCGGGTTGACGAAGGCGGCGATGACGTCGACATCGCCGCTGCCGCCCTCGATTTACTGt < 6:24595/98‑1 (MQ=255) gcccgccGCGCACGCTGATCAGGTGCACACAGGCACCACCCGGGTTGACGAAGGCGGCGATGACGTCGACATCGCCGCTGCCGCCCTCGATTTACTGt > 5:24595/1‑98 (MQ=255) ccgccgCGCACGCTGATCAGGTGCACACAGGCACCACCCGGGTTGACGAAGGCGGCGATGACGTCGACATCGCCGCTGCCGCCCTCGATGTACTGTTGGTCCTGCACGCGGCGCAACAAGGCGATCTGGTCGCGCAGCTCGGCGGCttt < 4:251092/149‑1 (MQ=255) gccgcGCACGCTGATCAGGTGCACACAGGCACCACCCGGGTTGACGAAGGCGGCGATGACGTCGACATCGCCGCTGCCGCCCTCGATGTACTGTTGGTCCTGCACGCGGCGCAACAAGGCGATCTGGTCGCGCAGCTCGGCGGCttttt > 8:16613/1‑149 (MQ=255) ccgcGCACGCTGATCAGGTGCACACAGGCACCACCCGGGTTGACGAAGGCGGCGATGACGTCGACATCGCCGCTGCCGCCCTCGATGTACTGTTGGTCCTGCACGCGGCGCAACAAGGCGATCTGGTCGCGCAGCTCGGCGGCTTTTTc < 8:63107/149‑1 (MQ=255) gcgcACGCTGATCAGGTGCACACAGGCACCACCCGGGTTGACGAAGGCGGCGATGACGTCGACATCGCCGCTGCCGCCCTCGATGTACTGTTGGTCCTGCACGCGGCGCAACAAGGCGATCTGGTCGCGCAGCTCGGCGGCt > 6:12662/1‑142 (MQ=255) gcgcACGCTGATCAGGTGCACACAGGCACCACCCGGGTTGACGAAGGCGGCGATGACGTCGACATCGCCGCTGCCGCCCTCGATGTACTGTTGGTCCTGCACGCGGCGCAACAAGGCGATCTGGTCGCGCAGCTCGGCGGCt < 5:12662/142‑1 (MQ=255) gcgcACGCTGATCAGCTGCACACAGCCACCACCCGGGTTGACGAAGGCGGCGATGACGTCGACATCGCCGCTGCCGCCCTCGATGTACTGTTGGTCCTGCACGCGGCGCAACAAGGCGATCTGGTCGCGCAGCTCGGCGGCTTTTTCGa < 6:210763/149‑1 (MQ=255) cgcACGCTGATCAGGTGCACACAGGCACCACCCGGGTTGACGAAGGCGGCGATGACGTCGACATCGCCGCTGCCGCCCTCGATGTACTGTTGGTCCTGCACGCGGCGCAACAAGGCGATCTGGTCGCGCAGCTCGGCGGCTTTTTCGa > 4:59931/1‑148 (MQ=255) cACGCTGATCAGGTGCACACAGGCACCACCCGGGTTGACGAAGGCGGCGATGACGTCGACATCGCCGCTGCCGCCCTCGATGTACTGTTGGTCCTGCACGCGGCGCAACAAGGCGATCTGGTCGCGCAGCTCGGCGGCTTTTTCGAAAt < 7:16613/149‑1 (MQ=255) aCGCTGATCAGGTGCACACAGGCACCACCCGGGTTGACGAAGGCGGCGATGACGTCGACATCGCCGCTGCCGCCCTCGATGTACTGTTGGTCCTGCACGCGGCGCAACAAGGCGATCTGGTCGCGCAGCTCGGCGGCTTTTTCGAAATc > 2:96946/1‑149 (MQ=255) gATCAGGTGCACACAGGCACCACCCGGGTTGACGAAGGCGGCGATGACGTCGACATCGCCGCTGCCGCCCTCGATGTACTGTTGGTCCTGCACGCGGCGCAAGAAGGCGATCTGGTCGCGCAGCTCGGCGGCTTTTTCGAAATCGAggg > 3:245701/1‑149 (MQ=255) gATCAGGTGCACACAGGCACCACCCGGGTTGACGAAGGCGGCGATGACGTCGACATCGCCGCTGCCGCCCTCGATGTACTGTTGGTCCTGCACGCGGCGCAACAAGGCGATCTGGTCGCGCAGCTCGGCGGCTTTTTCGAAATCGAggg > 2:27764/1‑149 (MQ=255) aTCAGGTGCACACAGGCACCACCCGGGTTGACGAAGGCGGCGATGACGTCGACATCGCCGCTGCCGCCCTCGATGTACTGTTGGTCCTGCACGCGGCGCAACAAGGCGATCTGGTCGCGCAGCTCGGCGGCTTTTTCGAAATCGAGGGc > 8:306492/1‑149 (MQ=255) ggTGCACACAGGCACCACCCGGGTTGACGAAGGCGGCGATGACGTCGACATCGCCGCTGCCGCCCTCGATGTACTGTTGGTCCTGCACGCGGCGCAACAAGGCGATCTGGTCGCGCAGCTCGGCGGCTTTTTCGAAATCGAGGGCCATg < 3:59931/149‑1 (MQ=255) gTGCACACAGGCACCACCCGGGTTGACGAAGGCGGCGATGACGTCGACATCGCCGCTGCCGCCCTCGATGTACTGTTGGTCCTGCACGCGGCGCAACAAGGCGATCTGGTCGCGCAGCTCGGCGGCTTTTTCGAAATCGAg < 1:1803/141‑1 (MQ=255) gTGCACACAGGCACCACCCGGGTTGACGAAGGCGGCGATGACGTCGACATCGCCGCTGCCGCCCTCGATGTACTGTTGGTCCTGCACGCGGCGCAACAAGGCGATCTGGTCGCGCAGCTCGGCGGCTTTTTCGAAATCGAg > 2:1803/1‑141 (MQ=255) cacacaGGCACCACCCGGGTTGACGAAGGCGGCGATGACGTCGACATCGCCGCTGCCGCCCTCGATGTACTGTTGGTCCTGCACGCGGCGCAACAAGGCGATCTGGTCGCGCAGCTCGGCGGCTTTTTCGAAATCGAGGGCCATggcgg > 8:263947/1‑149 (MQ=255) acaGGCACCACCCGGGTTGACGAAGGCGGCGATGACGTCGACATCGCCGCTGCCGCCCTCGATGTACTGTTGGTCCTGCACGCGGCGCAACAAGGCGATCTGGTCGCGCAGCTCGGCGGCTTTTTCGAAATCGAGGGCCATGGCGGCCt > 4:149044/1‑149 (MQ=255) acaGGCACCACCCGGGTTGACGAAGGCGGCGATGACGTCGACATCGCCGCTGCCGCCCTCGATGTACTGTTGGTCCTGCACGCGGCGCAACAAGGCGATCTGGTCGCGCAGCTCGGCGGCTTTTTCGAAATCGAGGGCCATGGCGGCCt > 3:30189/1‑149 (MQ=255) aGGCACCACCCGGGTTGCCGAAGGCGGCTATGACGTCGACATCGCCGCTGCCGCCCTCGATGTACTGTTGGTCCTGCACGCGGCGCAACAAGGCGATCTGGTCGCGCAGCTCGGCGGCTTTTTCGAAATCGAGGGCCATGGCGGCCttt < 7:285863/149‑1 (MQ=255) ccGGGTTGACGAAGGCGGCGATGACGTCGACATCGCCGCTGCCGCCCTCGATGTACTGTTGGTCCTGCACGCGGCGCAACAAGGCGATCTGGTCGCGCAGCTCGGCGGCTTTTTCGAAATCGAGGGCCATGGCGGCCTTTTcc < 5:165144/143‑1 (MQ=255) ccGGGTTGACGAAGGCGGCGATGACGTCGACATCGCCGCTGCCGCCCTCGATGTACTGTTGGTCCTGCACGCGGCGCAACAAGGCGATCTGGTCGCGCAGCTCGGCGGCTTTTTCGAAATCGAGGGCCATGGCGGCCTTTTcc > 6:165144/1‑143 (MQ=255) ggTTGACGAAGGCGGCGATGACGTCGACATCGCCGCTGCCGCCCTCGATGTACTGTTGGTCCTGCACGCGGCGCAACAAGGCGATCTGGTCGCGCAGCTCGGCGGCTTTTTCGAAATCGAGGGCCATGGCGGCCTTTTCCATCTCGGCg < 5:65285/149‑1 (MQ=255) cggcgATGACGTCGACATCGCCGCTGCCGCCCTCGATGTACTGTTGGTCCTGCACGCGGCGCAACAAGGCGATCTGGTCGCGCAGCTCGGCGGCTTTTTCGAAATCGAGGGCCATGGCGGCCTTTTCCATCTCGGCGTTCAACTCATTg < 5:72977/149‑1 (MQ=255) tCGACATCGCCGCTGCCGCCCTCGATGTACTGTTGGTCCTGCACGCGGCGCAAGAAGGCGATCTGGTCGCGCAGCTCGGCGGCTTTTTCGAAATCGAGGGCCATGGCGGCCTTTTCCATCTCGGCGTTCAACTCATTGCCCAGTTGCTg < 4:245701/149‑1 (MQ=255) tCGACATCGCCGCTGCCGCCCTCGATGTACTGTTGGTCCTGCACGCGGCGCAACAAGGCGATCTGGTCGCGCAGCTCGGCGGCTTTTTCGAAATCGAGGGCCATGGCGGCCTTTTCCATCTCGGCGTTCAACTCATTGCCCAGTTGCTg > 8:287557/1‑149 (MQ=255) | TGGGACAGGAATGCGGCCATGACCTCGGCCACCTCCTCCTCGATGCCCACCTGCGGGAAGAAGTTCTTGCTGCCCAGTACTCGCCCGCCGCGCACGCTGATCAGGTGCACACAGGCACCACCCGGGTTGACGAAGGCGGCGATGACGTCGACATCGCCGCTGCCGCCCTCGATGTACTGTTGGTCCTGCACGCGGCGCAACAAGGCGATCTGGTCGCGCAGCTCGGCGGCTTTTTCGAAATCGAGGGCCATGGCGGCCTTTTCCATCTCGGCGTTCAACTCATTGCCCAGTTGCTG > NC_002947/4634209‑4634504 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |