Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 4,858,163 | G→C | 11.5% | D72H (GAC→CAC) | PP_4273 → | MerR family transcriptional regulator |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 4,858,163 | 0 | G | C | 11.5% | 148.5 / 9.0 | 52 | D72H (GAC→CAC) | PP_4273 | MerR family transcriptional regulator |
Reads supporting (aligned to +/- strand): ref base G (25/21); new base C (2/4); total (27/25) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 4.11e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.65e-01 |
GAAAGGCTTGCTCAAGTCCTTGGCCGGGCGCGGCCAGCGTCGACAGTTTGCAGCCGATGTGGCAGACCGGTTGGCGCTGATCGCCCTGGGGCAGGCTGCGGGGTTTTCGCTGGATGAAGTGGGGGCGATGCTGGTGGACCTGCAGGTCGACCGGCAGATGCTGATGGCCAAGGCGGACGAGCTGGATGCGCGGATCAAGCGGTTGCAGGCGATGAGCAAGGGGTTGCGGCATGCCGCGCAATGCCCTGAGAAAGATCATCTGGCATGCCCGAAATTCCAGCAGCTGATGAAG > NC_002947/4858015‑4858306 | gaaAGGCTTGCTCAAGTCCTTGGCCGGGCGCGGCCAGCGTCGACAGTTTGCAGCCGATGTGGCAGACCGGTTGGCGCTGATCGCCCTGGGGCAGGCTGCGGGGTTTTCGCTGGATGAAGTGGGGGCGATGCTGGTGGACCTGCAGGTCg < 2:208990/149‑1 (MQ=255) aaaGGCTTGCTCAAGTCCTTGGCCGGGCGCGGCCAGCGTCGACAGTTTGCAGCCGATGTGGCAGACCGGTTGGCGCTGATCGCCCTGGGGCAGGCTACGGGGTTTTCGCTGGATGAAGTGGGGGCGATGCTGGTGGACCTGCAGGTCGa > 6:248848/1‑149 (MQ=255) ggCTTGCTCAAGTCCTTGGCCGGGCGCGGCCAGCGTCGACAGTTTGCAGCCGATGTGGCAGACCGGTTGGCGCTGATCGCCCTGGGGCAGGCTGCGGGGTTTTCGCTGGATGAAGTGGGGGCGATGCCGGTCGACCTGCAGGTCCAcca < 3:109954/149‑2 (MQ=255) cTCAAGTCCTTGGCCGGGCGCGGCCAGCGTCGACAGCTTGCAGCCGATGTGGCAGACCGGTTGGCGCTGATCGCCCTGGGGCAGGCTGCGGGGTTTTCGCTGGATGAAGTGGGGGCGATGCCGGTCGACCTGCAGGTCCACCAGCatc < 7:109047/148‑3 (MQ=255) tCAAGTCCTTGGCCGGGCGCGGCCAGCGTCGACAGTTTGCAGCCGATGTGGCAGACCGGTTGGCGCTGTTCGCCCTGGGGCAGGCTGCGGGGTTTTCGCTGGATGAAGTGGGGGCGATGCTGGTGGACCTGCAGGTCGACCGGCAGATg > 6:105396/1‑149 (MQ=255) cAAGTCCTTGGCCGGGCGCGGCCAGCGTCGACAGTTTGCAGCCGATGTGGCAGACCGGTTGGCGCTGATCGCCCTGGGGCAGGCTGCGGGGTTTTCGCTGGATGAAGTGGGGGCGATGCTGGTGGACCTGCAGGTCGACCGGCAGATGc > 6:249010/1‑149 (MQ=255) gacgctGGCCGCGCCCGGCCAGCGTCGACAGTTTGCAGCCGATGTGGCAGACCGGTTGGCGCTGATCGCCCTGGGGCAGGCTGCGGGGTTATCGCTGGATGAAGTGGGGGCGATGCTGGTGGACCTGCAGGTCGACCGGCAGATGCTGa > 5:337193/6‑149 (MQ=255) tCCTTGGCCGGGCGCGGCCAGCGTCGACAGTTTGCAGCCGATGTGGCAGACCGGTTGGCGCTGATCGCCCTGGGGCAGGCTGCGGGGTTTTCGCTGGATGAAGTGGGGGCGATGCTGGTGGACCTGCAGGTCGACCGGCAGATGCTGAt > 3:2451/1‑149 (MQ=255) cTTGGCCGGGCGCGGCCAGCGTCGACAGTTTGCAGCCGATGTGGCAGACCGGTTGGCGCTGATCGCCCTGGGGCAGGCTGCGGGGTTTTCGCTGGATGAAGTGGGGGCGATGCTGGTGGACCTGCAGGTCGACCGGCAGATGCTGATgg > 5:247980/1‑149 (MQ=255) ggCCGGGCGCGGCCAGCGTCGACAGTTTGCAGCCGATGTGGCAGACCGGTTGGCGCTGTTCGCCCTGGGGCAGGCTGCGGGGTTTTCGCTGGATGAAGTGGGGGCGATGCTGGTGGACCTGCAGGTCGACCGGCAGATGCTGATGGcc < 5:105396/148‑1 (MQ=255) ggCCGGGCGCGGCCAGCGTCGACAGTTTGCAGCCGATGTGGCAGACCGGTTGGCGCTGATCGCCCTGGGGCAGGCTGCGGGGTTTTCGCTGGATGAAGTGGGGGCGATGCTGGTGGACCTGCAGGTCGACCGGCAGATGCTGATGGc < 7:181816/147‑1 (MQ=255) gggCGCGGCCAGCGTCGACAGTTTGCAGCCGATGTGGCAGACCGGTTGGCGCTGATCGCCCTGGGGCAGGCTACGGGGTTTTCGCTGGATGAAGTGGGGGCGATGCTGGTGGACCTGCAGGTCGACCGGCAGATGCTGATGGCCAAGGc < 5:248848/149‑1 (MQ=255) cAGCGTCGACAGTTTGCAGCCGATGTGGCAGACCGGTTGGCGCTGATCGCCCTGGGGCAGGCTGCGGGGTTTTCGCTGGATGAAGTGGGGGCGATGCTGGTGGACCTGCAGGTCGACCGGCAGATGCTGATGGCCAAGGCGGACGAGCt < 5:63630/149‑1 (MQ=255) cAGCGTCGACAGTTTGCAGCCGATGTGGCAGACCGGTTGGCGCTGATCGCCCTGGGGCAGGCTGCGGGGTTTTCGCTGGATGAAGTGGGGGCGATGCCGGTCGACCTGCAGGTCCACCAGc > 7:139277/1‑121 (MQ=255) cAGCGTCGACAGTTTGCAGCCGATGTGGCAGACCGGTTGGCGCTGATCGCCCTGGGGCAGGCTGCGGGGTTTTCGCTGGATGAAGTGGGGGCGATGCCGGTCGACCTGCAGGTCCACCAGc < 8:139277/121‑1 (MQ=255) tCGACAGTTTGCAGCCGATGTGGCAGACCGGTTGGCGCTGATCGCCCTGGGGCAGGCTGCGGGGTTTTCGCTGGATGAAGTGGGGGCGATGCTGGTGGACCTGCAGGTCGACCGGCAGATGCTGATGGCCAAGGCGGACGAGCTGGATg < 4:2451/149‑1 (MQ=255) aCAGTTTGCAGCCGATGTGGCAGACCGGTTGGCGCTGATCGCCCTGGGGCAGGCTGCGGGGTTTTCGCTGGATGAAGTGGGGGCGATGCTGGTGGACCTGCAGGTCGACCGGCAGATGCTGATGGCCAAGGCGGACGAGCTGGATgcgc < 6:225378/149‑1 (MQ=255) cAGTTTGCAGCCGATGTGGCAGACCGGTTGGCGCTGATCGCCCTGGGGCAGGCTGCGGGGTTTTCGCTGGATGAAGTGGGGGCGATGCTGGTGGACCTGCAGGTCGACCGGCAGATGCTGATGGCCAAGGCGGACGAGCTGGATGcgcg < 5:249010/149‑1 (MQ=255) gCAGCCGATGTGGCAGACCGGTTGGCGCTGATCGCCCTGGGGCAGGCTGCGGGGTTTTCGCTGGATGAAGTGGGGGCGATGCTGGTGGACCTGCAGGTCGACCGGCAGATGCTGATGGCCAAGGCGGACGAGCTGGATGCGCGGATc > 4:272421/1‑147 (MQ=255) aGCCGATGTGGCAGACCGGTTGGCGCTGATCGCCCTGGGGCAGGCTGCGGGGTTTTCGCTGGATGAAGTGGGGGCGATGCCGGTCGACCTGCAGGTCCACCAGCa < 3:207214/105‑1 (MQ=39) aGCCGATGTGGCAGACCGGTTGGCGCTGATCGCCCTGGGGCAGGCTGCGGGGTTTTCGCTGGATGAAGTGGGGGCGATGCCGGTCGACCTGCAGGTCCACCAGCa > 4:207214/1‑105 (MQ=39) gCCGATGTGGCAGACCGGTTGGCGCTGATCGCCCTGGGGCAGGCTGCGGGGTTTTCGCTGGATGAAGTGGGGGCGATGCTGGTGGACCTGCAGGTCGACCGGCAGATGCTGATGGCCAAGGCGGACGAGCTGGATGCGCGGATCAAGCg > 7:229850/1‑149 (MQ=255) ccGATGTGGCAGACCGGTTGGCGCTGATCGCCCTGGGGCAGGCTGCGGGGTTTTCGCTGGATGAAGTGGGGGCGATGCTGGTGGACCTGCAGGTCGACCGGCAGATGCTGATGGCCAAGGCGGACGAGCTGGATGCGCGGAt > 1:205882/1‑142 (MQ=255) ccGATGTGGCAGACCGGTTGGCGCTGATCGCCCTGGGGCAGGCTGCGGGGTTTTCGCTGGATGAAGTGGGGGCGATGCTGGTGGACCTGCAGGTCGACCGGCAGATGCTGATGGCCAAGGCGGACGAGCTGGATGCGCGGAt < 2:205882/142‑1 (MQ=255) cGATGTGGCAGACCGGTTGGCGCTGATCGCCCTGGGGCAGGCTGCGGGGTTTTCGCTGGATGAAGTGGGGGCGATGCTGGTGGACCTGCAGGTCGACCGGCAGATGCTGATGGCCAAGGCGGACGAGCTGGATGCGCGGATCAAGCGGt < 1:136338/149‑1 (MQ=255) tgGCAGACCGGTTGGCGCTGATCGCCCTGGGGCAGGCTGCGGGGTTTTCGCTGGATGAAGTGGGGGCGATGCTGGTGGACCTGCAGGTCGACCGGCAGATGCTGATGGCCAAGGCGGACGAGCTGGATGCGCGGATCAAGCGGTTg > 2:53773/1‑146 (MQ=255) tgGCAGACCGGTTGGCGCTGATCGCCCTGGGGCAGGCTGCGGGGTTTTCGCTGGATGAAGTGGGGGCGATGCTGGTGGACCTGCAGGTCGACCGGCAGATGCTGATGGCCAAGGCGGACGAGCTGGATGCGCGGATCAAGCGGTTGCa < 1:53773/148‑1 (MQ=255) gCAGACCGGTTGGCGCTGATCGCCCTGGGGCAGGCTGCGGGGTTTTCGCTGGATGAAGTGGGGGCGATGCTGGTGGACCTGCAGGTCGACCGGCAGATGCTGATGGCCAAGGCGGACGAGCTGGATGCGCGGCTCAAGCGGTTGCAGGc > 6:321305/1‑149 (MQ=255) gCAGACCGGTTGGCGCTGATCGCCCTGGGGCAGGCTGCGGGGTTTTCGCTGGATGAAGTGGGGGCGATGCTGGTGGACCTGCAGGTCGACCGGCAGATGCTGATGGCCAAGGCGGACGAGCTGGATGCGCGGATCAAGCGGTTGCAGGc > 6:55882/1‑149 (MQ=255) gCAGACCGGTTGGCGCTGATCGCCCTGGGGCAGGCTGCGGGGTTTTCGCTGGATGAAGTGGGGGCGATGCTGGTGGACCTGCAGGTCGACCGGCAGATGCTGATGGCCAAGGCGGACGAGCTGGATGCGCGGATCAAGCGGTTGCAGGc > 8:252619/1‑149 (MQ=255) gTTGGCGCTGATCGCCCTGGGGCAGGCTGCGGGGTTTTCGCTGGATGAAGTGGGGGCGATGCTGGTGGACCTGCAGGTCGACCGGCAGATGCTGATGGCCAAGGCGGACGAGCTGGATGCGCGGATCAAGCGGTTGCAGGCGATGAGc > 5:320073/1‑148 (MQ=255) aTCGCCCTGGGGCAGGCTGCGGGGTTTTCGCTGGATGAAGTGGGGGCGATGCTGGTGGACCTGCAGGTCGACCGGCAGATGCTGATGGCCAAGGCGGACGAGCTGGATGCGCGGATCAAGCGGTTGCAGGCGATGAGCAAGGGGTTGCg < 2:41168/149‑1 (MQ=255) cTGGGGCAGGCTGCGGGGTTTTCGCTGGATGAAGTGGGGGCGATGCTGGTGGACCTGCAGGTCGACCGGCAGATGCTGATGGCCAAGGCGGACGAGCTGGATGCGCGGATCAAGCGGTTGCAGGCGATGAGCAAGGGGTTGCGGCATGc < 6:320073/149‑1 (MQ=255) gggCAGGCTGCGGGGTTTTCGCTGGATGAAGTGGGGGCGATGCTGGTGGACCTGCAGGTCGACCGGCAGATGCTGATGGCCAAGGCGGACGAGCTGGATGCGCGGATCAAGCGGTTGCAGGCGATGAGCAAGGGGTTGCGGCATGcc < 6:247980/147‑1 (MQ=255) gCAGGCTGCGGGGTTTTCGCTGGATGAAGTGGGGGCGATGCTGGTGGACCTGCAGGTCGACCGGCAGATGCTGATGGCCAAGGCGGACGAGCTGGATGCGCGGATCAAGCGGTTGCAGGCGATGAGCAAGGGGTTGc < 4:280146/137‑1 (MQ=255) cTGCGGGGTTTTCGCTGGATGAAGTGGGGGCGATGCTGGTGGACCTGCAGGTCGACCGGCAGATGCTGATGGCCAAGGCGGACGAGCTGGATGCGCGGATCAAGCGGTTGCAGGCGATGAGCAAGGGGTTGCGGCATGCCGCGCAATGc > 2:84928/1‑149 (MQ=255) cGGGGTTTTCGCTGGATGAAGTGGGGGCGATGCTGGTGGACCTGCAGGTCGACCGGCAGATGCTGATGGCCAAGGCGGACGAGCTGGATGCGCGGATCAAGCGGTTGCAGGCGATGAGCAAGGGGTTGCGGCATGCCGCGCAATGcc < 8:167741/147‑1 (MQ=255) ggggTTTTCGCTGGATGAAGTGGGGGCGATGCTGGTGGACCTGCAGGTCGACCGGCAGATGCTGATGGCCAAGGCGGACGAGCTGGATGCGCGGATCAAGCGTTTGCAGGCGATGAGCAAGGGGTTGCGGCATGCCGCGCAATGCCCt > 1:310067/1‑148 (MQ=255) ttttCGCTGGATGAAGGGGGGGCGATGCTGGTGGACCTGCAGGTCGACCGTCAGATGCTGATGGCCAAGGCGGACGAGCTGGATGCGCGGATCAAGCGGTTGCAGGCGATGAGCAAGGGGTTGCGGCATGCCGCGCAATGCCCTGAGaa < 3:170620/149‑1 (MQ=255) tCGCTGGATGAAGTGGGGGCGATGCTGGTGGACCTGCAGGTCGACCGGCAGATGCTGATGGCCAAGGCGGACGAGCTGGATGCGCGGATCAAGCGGTTGCAGGCGATGAGCAAGGGGTTGCGGCATGCCGCGCAATGCCCTgaga > 6:114252/1‑145 (MQ=255) cGCTGGATGAAGTGGGGGCGATGCTGGTGGACCTGCAGGTCGACCGGCAGATGCTGATGGCCAAGGCGGACGAGCTGGATGCGCGGATCAAGCGGTTGCAGGCGATGAGCAAGGGGTTGCGGCATGCCGCGCAATGCCCTGAGAAAGa < 3:272421/148‑1 (MQ=255) ggATGAAGTGGGGGCGATGCTGGTGGACCTGCAGGTCGACCGGCAGATGCTGATGGCCAAGGCGGACGAGCTGGATGCGCGGATCAAGCGGTTGCAGGCGATGAGCAAGGGGTTGCGGCATGCCGCGCAATGCCCTGAGAAAGatcatc > 5:342606/1‑149 (MQ=255) tGGGGGCGATGCTGGTGGACCTGCAGGTCGACCGGCAGATGCTGATGGCCAAGGCGGACGAGCTGGATGCGCGGATCAAGCGGTTGCAGGCGATGAGCAAGGGGTTGCGGCATGCCGCGCAATGCCCTGAGAAAGATCATCTGGCATGc > 6:220822/1‑149 (MQ=255) gggCGATGCTGGTGGACCTGCAGGTCGACCGGCAGATGCTGATGGCCAAGGCGGACGAGCTGGATGCGCGGATCAAGCGGTTGCAGGCGATGAGCAAGGGGTTGCGGCATGCCGCGCAATGCCCTGAGAAAGATCATCTGGCATGccc > 6:345775/1‑148 (MQ=255) ggCGATGCTGGTGGACCTGCAGGTCGACCGGCAGATGCTGATGGCCAAGGCGGACGAGCTGGATGCGCGGATCAAGCGGTTGCAGGCGATGAGCAAGGGGTTGCGGCATGCCGCGCAATGCCCTGAGAAAGATCATCTGGCATGc < 3:254104/145‑1 (MQ=255) ggCGATGCTGGTGGACCTGCAGGTCGACCGGCAGATGCTGATGGCCAAGGCGGACGAGCTGGATGCGCGGATCAAGCGGTTGCAGGCGATGAGCAAGGGGTTGCGGCATGCCGCGCAATGCCCTGAGAAAGATCATCTGGCATGc > 4:254104/1‑145 (MQ=255) gCGATGCTGGTGGACCTGCAGGTCGACCGGCAGATGCTGATGGCCAAGGCGGACGAGCTGGATGCGCGGATCAAGCGGTTGCAGGCGATGAGCAAGGGGTTGCGGCATGCCGCGCAATGCCCTGAGAAAGATCATCTGGCATGCCCGaa < 5:220822/149‑1 (MQ=255) gATGCTGGTGGACCTGCAGGTCGACCGGCAGATGCTGATGGCCAAGGCGGACGAGCTGGATGCGCGGATCAAGCGGTTGCAGGCGATGAGCAAGGGGTTGCGGCATGCCGCGCAATGCCCTGAGAAAGATCATCTGGCATGCCCGAAAt > 5:72567/1‑149 (MQ=255) tGCTGGTGGACCTGCAGGTCGAACGGCAGATGCTGATCGCCAAGGCGGACGAGCTGGATGCGCGGATCAAGCGGTTGCAGGCGATGAGCAAGGGCTTGCGGCATGCCGCTCAATGCCCTGAGAAAGATCATCTGGCATGCCCGAAATTc > 7:285544/1‑149 (MQ=255) cTGGTGGACCTGCAGGTCGACCGGCAGATGCTGATGGCCAAGGCGGACGAGCTGGATGCGCGGATCAAGCGGTTGCAGGCGATGAGCAAGGGGTTGCGGCATGCCGCGCAATGCCCTGAGAAAGATCATCTGGCATGCCCGAAATTCca < 8:229850/149‑1 (MQ=255) gACCTGCAGGTCGACCGGCAGATGCTGATGGCCAAGGCGGACGAGCTGGATGCGCGGATCAAGCGGATGCAGGCGATGAGCAAGGGGATGCGGAATGCCGCGAAATGCCATGAGAAAGATCATCTGGCATGCCCGAAATTCCAGAAGCt > 7:162364/1‑149 (MQ=255) gCAGGTCGACCGGCAGATGCTGATGGCCAAGGCGGACGAGCTGGATGCGCGGATCAAGCGGTTGCAGGCGATGAGCAAGGGGTTGCGGCATGCCGCGCAATGCCCTGAGAAAGAGCATCTGGCATGCCCGAAATTCCAGCAGCtgatg > 8:168859/1‑148 (MQ=255) aGGTCGACCGGCAGATGCTGATGGCCAAGGCGGACGAGCTGGATGCGCGGATCAAGCGGTTGCAGGCGATGAGCAAGGGGTTGCGGCATGCCGCGCAATGCCCTGAGAAAGATCATCTGGCATGCCCGAAATTCCAGCAGCTGATGAAg < 1:84928/149‑1 (MQ=255) | GAAAGGCTTGCTCAAGTCCTTGGCCGGGCGCGGCCAGCGTCGACAGTTTGCAGCCGATGTGGCAGACCGGTTGGCGCTGATCGCCCTGGGGCAGGCTGCGGGGTTTTCGCTGGATGAAGTGGGGGCGATGCTGGTGGACCTGCAGGTCGACCGGCAGATGCTGATGGCCAAGGCGGACGAGCTGGATGCGCGGATCAAGCGGTTGCAGGCGATGAGCAAGGGGTTGCGGCATGCCGCGCAATGCCCTGAGAAAGATCATCTGGCATGCCCGAAATTCCAGCAGCTGATGAAG > NC_002947/4858015‑4858306 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |