| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 4,971,954 | G→T | 8.7% | intergenic (‑389/+28) | PP_4379 ← / ← flgL | 3‑oxoacyl‑ACP synthase/flagellar hook‑associated protein FlgL |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 4,971,954 | 0 | G | T | 8.7% | 215.2 / 9.4 | 69 | intergenic (‑389/+28) | PP_4379/flgL | 3‑oxoacyl‑ACP synthase/flagellar hook‑associated protein FlgL |
| Reads supporting (aligned to +/- strand): ref base G (33/30); new base T (3/3); total (36/33) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 2.04e-01 | |||||||||||
GGGCACTGGACCCCGAATGATCAGCTTCGCAGCAGATATCGATGGGGCCGCATCGCGGCCCTTTCGCGACGCAAGGCCGCTCCCACGAATACGCCACCTCCAGGAGAGAGGACGACCTGTGGGGGCCTTGTGTCGCGATAGGGCTGCGCAGCAGCCCC‑‑AGGATCAGGCAGGCAGATTAGATCTTGTCGAACAGGCTTAGCTGAGAAATGCGCGCAAACGCCAGTTGCGAAGCTTCAAGCATGGCCTGCTGCAGGGTCAGCTGAATGGTGGCCGAGGCCATGTCAGTATCGCCAATG > NC_002947/4971807‑4972102 | gggcACTGGACCCCGAATGATCAGCTTCGCAGCAGATATCGATGGGGCCGCATCGCGGCCCTTTCGCGACGCAAGGCCGCTCCCACGAATACGCCACCTCCAGGAGAGAGGACGACCTGTGGGGGCCTTGTGTCGCGATAGGGCTgcg > 5:181585/1‑148 (MQ=255) cccGAATGATCAGCTTCGCAGCAGATATCGATGGGGCCGCATCGCGGCCCTTTCGCGACGCAAGGCCGCTCCCACGAATACGCCACCTCCAGGAGAGAGGACGACCTGTGGGGGCCTTGTGTCGCGATAGGGCTGCGCAGCAGCCCC‑‑Ag > 4:58611/1‑149 (MQ=255) ccGAATGATCAGCTTCGCAGCAGATATCGATGGGGCCGCATCGCGGCCCTTTCGCGACGCAAGGCCGCTCCCACGAATACGCCACCTCCAGGAGAGAGGACGACCTGTGGGGGCCTTGTGTCGCGATAGGGCTGCTGCGCAGccctatc < 6:143173/149‑5 (MQ=255) ccGAATGATCAGCTTCGCAGCAGATATCGATGGGGCCGCATCGCGGCCCTTTCGCGACGCAAGGCCGCTCCCACGAATACGCCACCTCCAGGAGAGAGGACGACCTGTGGGGGCCTTGTGTCGCGATAGGGCTGCGCAGCAGCCCC‑‑Agg < 3:58611/149‑1 (MQ=255) tGATCAGCTTCGCAGCAGATATCGATGGGGCCGCATCGCGGCCCTTTCGCGACGCAAGGCCGCTCCCACGAATACGCCACCTCCAGGAGAGAGGACGACCTGTGGGGGCCTTGTGTCGCGATAGGGCTGCGCAGCAGCCCC‑‑AGGATcag < 7:90892/149‑1 (MQ=255) aTCAGCTTCGCAGCAGATATCGATGGGGCCGCATCGCGGCCCTTTCGCGACGCAAGGCCGCTCCCACGAATACGCCACCTCCAGGAGAGAGGACGACCTGTGGGGGCCTTGTGTCGCGATAGGGCTGCGCGGCAGCCCC‑‑AGGATcagg > 4:265569/1‑148 (MQ=255) aGCTTCGCAGCAGATATCGATGGGGCCGCATCGCGGCCCTTTCGCGACGCAAGGCCGCTCCCACGAATACGCCACCTCCAGGAGAGAGGACGACCTGTGGGGGCCTTGTGTCGCGATAGGGCTGCGCAGCAGCCCC‑‑AGGATcaggcagg < 6:181585/149‑1 (MQ=255) gCTTCGCAGCAGATATCGATGGGGCCGCATCGCGGCCCTTTCGCGACGCAAGGCCGCTCCCACGAATACGCCACCTCCAGGAGAGAGGACGACCTGTGGGGGCCTTGTGTCGCGATAGGGCTGCGCAGCAGCCCC‑‑AGGATcaggcagg > 3:295747/1‑148 (MQ=255) ttCGCAGCAGATATCGATGGGGCCGCATCGCGGCCCTTTCGCGACGCAAGGCCGCTCCCACGAATACGCCACCTCCAGGAGAGAGGACGACCTGTGGGGGCCTTGTGTCGCGATAGGGCTGCGCAGCAGCCCC‑‑AGGATcaggcagg > 6:274002/1‑146 (MQ=255) gcagcaGATATCGATGGGGCCGCATCGCGGCCCTTTCGCGACGCAAGGCCGCTCCCACGAATACGCCACCTCCAGGAGAGAGGACGACCTGTGGGGGCCTTGTGTCGCGATAGGGCTGCGCAGCAGCCCC‑‑AGGATCAGGCAGGCAGAt < 3:245727/148‑1 (MQ=255) cagcagATATCGATGGGGCCGCATCGCGGCCCTTTCGCGACGCAAGTCAGCTCCCACGAATACGCCACCTCCAGGAGAGAGGACGACCTGTGGGGGCCTTGTTTCTCGATAGGGCTGCGCAGCAGCCCC‑‑AGGATCAGGCAGGCAGATTa < 7:75752/149‑1 (MQ=255) atCGATGGGGCCGCATCGCGGCCCTTTCGCGACGCAAGGCCGCTCCCACGAATACGCCACCTCCAGGAGAGAGGACGACCTGTGGGGGCCTTGTGTCGCGATAGGGCTGCGCAGCAGCCCC‑‑AGGATCaggcaggc < 6:135981/135‑1 (MQ=255) atCGATGGGGCCGCATCGCGGCCCTTTCGCGACGCAAGGCCGCTCCCACGAATACGCCACCTCCAGGAGAGAGGACGACCTGTGGGGGCCTTGTGTCGCGATAGGGCTGCGCAGCAGCCCC‑‑AGGATCaggcaggc > 5:135981/1‑135 (MQ=255) atCGATGGGGCCGCATCGCGGCCCTTTCGCGACGCAAGGCCGCTCCCACGAATACGCCACCTCCAGGAGAGAGGACGACCTGTGGGGGCCTTGTGTCGCGATAGGGCTGCGCAGCAGCCCC‑‑AGGATCAGGCAGGCAGATTAGATCTTGt > 5:26190/1‑149 (MQ=255) tCGATGGGGCCGCATCGCGGCCCTTTCGCGACGCAAGGCCGCTCCCACGAATACGCCACCTCCAGGAGAGAGGACGACCTGTGGGGGCCTTGTGTCGCGATAGGGCTGCGCGGCAGCCCC‑‑AGGATCAGGCAGGCAGATTAGATCTTGt < 3:265569/148‑1 (MQ=255) tCGATGGGGCCGCATCGCGGCCCTTTCGCGACGCAAGGCCGCTCCCACGAATACGCCACCTCCAGGAGAGAGGACGACCTGTGGGGGCCTTGTGTCGCGATAGGGCTGCGCAGCAGCCCC‑‑AGGATCAGGCAGGCAGATTAGATCTTGt < 5:265626/148‑1 (MQ=255) cGATGGGGCCGCATCGCGGCCCTTTCGCGACGCAAGGCCGCTCCCACGAATACGCCACCTCCAGGAGAGAGGACGACCTGTGGGGGCCTTGTGTCGCGATAGGGCTGCGCAGCAGCCCC‑‑AGGATCAGGCAGGCAGATTAGAt < 6:326799/142‑1 (MQ=255) cGATGGGGCCGCATCGCGGCCCTTTCGCGACGCAAGGCCGCTCCCACGAATACGCCACCTCCAGGAGAGAGGACGACCTGTGGGGGCCTTGTGTCGCGATAGGGCTGCGCAGCAGCCCC‑‑AGGATCAGGCAGGCAGATTAGAt > 5:326799/1‑142 (MQ=255) gggCCGCATCGCGGCCCTTTCGCGACGCAAGGCCGCTCCCACGAATACGCCACCTCCAGGAGAGAGGACGACCTGTGGGGGCCTTGTGTCGCGATAGGGCTGCGCAGCAGCCCC‑‑AGGATCAGGCAGGCAGATTAGATCTTGTCGAACa < 4:295747/148‑1 (MQ=255) ccGCATCGCGGCCCTTTCGCGACGCAAGGCCGCTCCCACGAATACGCCACCTCCAGGAGAGAGGACGACCTGTGGGGGCCTTGTGTCGCGATAGGGCTGCGCAGCAGCCCC‑‑AGGATCAGGCAGGCAGATTAg < 4:182128/132‑1 (MQ=255) ccGCATCGCGGCCCTTTCGCGACGCAAGGCCGCTCCCACGAATACGCCACCTCCAGGAGAGAGGACGACCTGTGGGGGCCTTGTGTCGCGATAGGGCTGCGCAGCAGCCCC‑‑AGGATCAGGCAGGCAGATTAg > 3:182128/1‑132 (MQ=255) gcgGCCCTTTCGCGACGCAAGGCCGCTCCCACGAATACGCCACCTCCAGGAGAGAGGACGACCTGTGGGGGCCTTGTGTCGCGATAGGGCTGCGCAGCAGCCCC‑‑AGGATCAGGCAGGCAGATTAGATCTTGTCGAACAGGCTTAGCTga < 1:322531/149‑1 (MQ=255) cgGCCCTTTCGCGACGCAAGGCCGCTCCCACGAATACGCCACCTCCAGGAGAGAGGACGACCTGTGGGGGCCTTGTGTCGCGATAGGGCTGCGCAGCAGCCCC‑‑AGGATCAGGCAGGCAGATTAGATCTTGTCGAACAGGCTTAGCTgag < 5:274002/149‑1 (MQ=255) gCCCTTTCGCGACGCAAGGCCGCTCCCACGAATACGCCACCTCCAGGAGAGAGGACGACCTGTGGGGGCCTTGTGTCGCGATAGGGCTGCGCAGCAGCCCC‑‑AGGATCAGGCAGGCAGATTAGATCTTGTCGAACAGGCTTAGCTgaga > 6:105826/1‑148 (MQ=255) ccTTTCGCGACGCAAGGCCGCTCCCACGAATACGCCACCTCCAGGAGAGAGGACGACCTGTGGGGGCCTTGTGTCGCGATAGGGCTGCGCAGCAGCCCC‑‑AGGATCAGGCAGGCAGATTAGATCTAGTCGAACAGGCTTAGCTGAGAAAt > 6:243607/1‑149 (MQ=255) gACGCAAGGCCGCTCCCACGAATACGCCACCTCCAGGAGAGAGGACGACCTGTGGGGGCCTTGTGTCGCGATAGGGCTGCGCAGCAGCCCC‑‑AGGATCAGGCAGGCAGATTAGAt < 3:119012/114‑1 (MQ=255) gACGCAAGGCCGCTCCCACGAATACGCCACCTCCAGGAGAGAGGACGACCTGTGGGGGCCTTGTGTCGCGATAGGGCTGCGCAGCAGCCCC‑‑AGGATCAGGCAGGCAGATTAGAt > 4:119012/1‑114 (MQ=255) aCGCAAGGCCGCTCCCACGAATACGCCACCTCCAGGAGAGAGGACGACCTGTGGGGGCCTTGTGTCGCGATAGGGCTGCGCAGCAGCCCC‑‑AGGATCAGGCAGGCAGATTAGATCTTGTCGAACAGGCTTAGCTg < 1:209129/134‑1 (MQ=255) aCGCAAGGCCGCTCCCACGAATACGCCACCTCCAGGAGAGAGGACGACCTGTGGGGGCCTTGTGTCGCGATAGGGCTGCGCAGCAGCCCC‑‑AGGATCAGGCAGGCAGATTAGATCTTGTCGAACAGGCTTAGCTg > 2:209129/1‑134 (MQ=255) aaGGCCGCTCCCACGAATACGCCACCTCCAGGAGAGAGGACGACCTGTGGGGGCCTTGTGTCGCGATAGGGCTGCGCAGCAGCCCC‑‑AGGATCAGGCAGGCAGATTAGATCTTGTCGAACAGGCTTAGCTGAGAAATGCGCGCAAACGc > 6:330897/1‑148 (MQ=255) ccGCTCCCACGAATACGCCACCTCCAGGAGAGAGGACGACCTGTGGGGGCCTTGTGTCGCGATAGGGCTGCGCAGCAGCCCC‑‑AGGATCAGGCAGGCAGATTAGATCTTGTCGAACAGGCTTAg > 5:145983/1‑123 (MQ=255) ccGCTCCCACGAATACGCCACCTCCAGGAGAGAGGACGACCTGTGGGGGCCTTGTGTCGCGATAGGGCTGCGCAGCAGCCCC‑‑AGGATCAGGCAGGCAGATTAGATCTTGTCGAACAGGCTTAg < 6:145983/123‑1 (MQ=255) cGCTCCCACGAATACGCCACCTCCAGGAGAGAGGACGACCTGTGGGGGCCTTGTGTCGCGATAGGGCTGCGCAGCAGCCCC‑‑AGGATCAGGCAGGCAGATTAGATCTTGTCGAACAGGCTTAGCTGAGAAATGCGCGCAAACGCCAGTTg > 1:77770/1‑149 (MQ=255) cTCCCACGAATACGCCACCTCCAGGAGAGAGGACGACCTGTGGGGGCCTTGTGTCGCGATAGGGCTGCGCAGCAGCCCC‑‑AGGATCAGGCAGGCAGATTAGATCTTGTCGAACAGGCTTAGCTGAGAAATGCGCGCAAACGCCAGTTGc > 5:44794/1‑148 (MQ=255) aCGAATACGCCACCTCCAGGAGAGAGGACGACCTGTGGGGGCCTTGTGTCGCGATAGGGCTGCGCAGCAGCCCC‑‑AGGATCAGGCAGGCAGATTAGATCTTGTCGAACAGGCTTAGCTGAGAAATGCGCGCAAACGCCAGTTGCGAAGCt > 4:119751/1‑149 (MQ=255) gAATACGCCACCTCCAGGAGAGAGGACGACCTGTGGGGGCCTTGTGTCGCGATAGGGCTGCGCAGCAGCCCC‑‑AGGATCAGGCAGGCAGATTAGATCTTGTCGAACAGGCTTAGCTGAGAAATGCGCGCAAACGCCAGTTGCGAAGCTTc < 1:303494/149‑1 (MQ=255) aTACGCCACCTCCAGGAGAGAGGACGACCTGTGGGGGCCTTGTGTCGCGATAGGGCTGCGCAGCAGCCCC‑‑AGGATCAGGCAGGCAGATTAGATCTTGTCGAACAGGCTTAGCTGAGAAATGCGCGCAAACGCCAGTTGCGa < 1:49830/141‑1 (MQ=255) aTACGCCACCTCCAGGAGAGAGGACGACCTGTGGGGGCCTTGTGTCGCGATAGGGCTGCGCAGCAGCCCC‑‑AGGATCAGGCAGGCAGATTAGATCTTGTCGAACAGGCTTAGCTGAGAAATGCGCGCAAACGCCAGTTGCGa > 2:49830/1‑141 (MQ=255) aTACGCCACCTCCAGGAGAGAGGACGACCTGTGGGGGCCTTGTGTCGCGATAGGGCTGCGCAGCAGCCCC‑‑AGGATCAGGCAGGCAGATTAGATCTTGTCGAACAGGCTTAGCTGAGAAATGCGCGCAAACGCCAGTTGCGAAGCTTCaa < 3:119751/149‑1 (MQ=255) gCCACCTCCAGGAGAGAGGACGACCTGTGGGGGCCTTGTGTCGCGATAGGGCTGCGCAGCAGCCCC‑‑AGGATCAGGCAGGCAGATTAGATCTTGTCGAACAGGCTTAGCTGAGAAATGCGCGCAAACGCCAGTTGCGaa < 4:51470/138‑1 (MQ=255) gCCACCTCCAGGAGAGAGGACGACCTGTGGGGGCCTTGTGTCGCGATAGGGCTGCGCAGCAGCCCC‑‑AGGATCAGGCAGGCAGATTAGATCTTGTCGAACAGGCTTAGCTGAGAAATGCGCGCAAACGCCAGTTGCGaa > 3:51470/1‑138 (MQ=255) ccACCTCCAGGAGAGAGGACGCCCTGTCGGGGCCTTGTGTCGCGATAGGGCTGCGCAGCAGCCCC‑‑AGGATCAGGCAGGCAGATTAGATCTTGTCGAACAGGCTTAGCTGAGAAATGCGCGCAAACGCCAGTTGCGAAGCTTCAAGCATg > 6:152462/1‑149 (MQ=255) ccACCTCCAGGAGAGAGGACGACCTGTGGGGGCCTTGTGTCGCGATAGGGCTGCGCAGCAGCCCC‑‑AGGATCAGGCAGGCAGATTAGATCTTGTCGAACAGGCTTAGCTGAGAAATGCGCGCAAACGCCAGTTGCGAAGCTTCAAGCATg > 1:79216/1‑149 (MQ=255) cACCTCCAGGAGAGAGGACGACCTGTGGGGGCCTTGTGTCGCGATAGGGCTGCGCAGCAGCCCCGGAGGATCAGGCAGGCAGATTAGATCTTGTCGAACAGGCTTAGCTGAGAAATGCGCGCAAACGCCAGTTGCGAAGCTTCAAGCAt > 1:103544/1‑149 (MQ=255) cACCTCCAGGAGAGAGGACGACCTGTGGGGGCCTTGTGTCGCGATAGGGCTGCGCAGCAGCCCC‑‑AGGATcag > 7:29278/1‑72 (MQ=255) cACCTCCAGGAGAGAGGACGACCTGTGGGGGCCTTGTGTCGCGATAGGGCTGCGCAGCAGCCCC‑‑AGGATcag < 8:29278/72‑1 (MQ=255) cAGGAGAGAGGACGACCTGTGGGGGCCTTGTGTCGCGATAGGGCTGCGCAGCAGCCCC‑‑AGGATCAGGCAGGCAGATTAGATCTTGTCGAACAGGCTTAGCTGAGAAATGCGCGCAAACGCCAGTTGCGAAGCTTCAAGCATGGCctgct > 2:278806/1‑149 (MQ=255) gagagaGGACGACCTGTGGGGGCCTTGTGTCGCGATAGGGCTGCGCAGCAGCCCC‑‑AGGATCAGGCAGGCAGATTAGATCTTGTCGAACAGGCTTAGCTGAGAAATGCGCGCAAACGCCAGTTGCGAAGCTTCAAGCATGGCctgctg > 8:7188/1‑147 (MQ=255) agagagGACGACCTGTGGGGGCCTTGTGTCGCGATAGGGCTGCGCAGCAGCCCC‑‑AGGATCAGGCAGGCAGATTAGATCTTGTCGAACAGGCTTAGCTGAGAAATGCGCGCAAACGCCAGTTGCGAAGCTTCAAGCATGGCCTGCTGCAg < 8:199913/149‑1 (MQ=255) gagagGACGACCTGTGGGGGCCTTGTGTCGCGATAGGGCTGCGCAGCAGCCCC‑‑AGGATCAGGCAGGCAGATTAGATCTTGTCGAACAGGCTTAGCTGAGAAATGCGCGCAAACGCCAGTTGCGAAGCTTCAAGCATGGCCTGCTGCAgg < 5:330897/149‑1 (MQ=255) gagGACGACCTGTGGGGGCCTTGTGTCGCGATAGGGCTGCGCAGCAGCCCC‑‑AGGATCAGGCAGGCAGATTAGATCTTGTCGAACAGGCTTAGCTGAGAAATGCGCGCAAACGCCAGTTGCGAAGCTTCAAGCATGGCCTGCTGCAGGGt < 7:132877/149‑1 (MQ=255) agGACGACCTGTGGGGGCCTTGTGTCGCGATAGGGCTGCGCAGCAGCCCC‑‑AGGATCAGGCAGGCAGATTAGATCTTGTCGAACAGGCTTAGCTGAGAAATGCGCGCAAACGCCAGTTGCGAAGCTTCAAGCATGGCCTGCTGCAGGGt > 6:56742/1‑148 (MQ=255) gacgacCTGTGGGGGCCTTGTGTCGCGATAGGGCTGCGCAGCAGCCCC‑‑AGGATCAGGCAGGCAGATTAGATCTTGTCGAACAGGCTTAGCTGAGAAATGCGCGCAATCGCCAGTTGCGAAGCTTCAAGCATGGCCTGCTGCAGGGTCAg < 5:243607/149‑1 (MQ=255) gacgacCTGTGGGGGCCTTGTGTCGCGATAGGGCTGCGCAGCAGCCCC‑‑AGGATCAGGCAGGCAGATTAGATCTTGTCGAACAGGCTTAGCTGAGAAATGCGCGCAAACGCCAGTTGCGAAGCTTCAAGCATGGCCTGCTGCAGGGTCAg > 7:64564/1‑149 (MQ=255) gacgacCTGTGGGGGCCTTGTGTCGCGATAGGGCTGCGCAGCAGCCCC‑‑AGGATCAGGCAGGCAGATTAGATCTTGTCGAACAGGCTTAGCTGAGAAATGCGCGCAAACGCCAGTTGCGAAGCTTCAAGCATGGCCTGCTGCAGGGTCAg > 7:267682/1‑149 (MQ=255) gacgacCTGTGGGGGCCTTGTGTCGCGATAGGGCTGCGCAGCAGCCCC‑‑AGGATCAGGCAGGCAGATTAGATCTTGTCGAACAGGCTTAGCTGAGAAATGCGCGCAAACGCCAGTTGCGAAGCTTCAAGCATGGCCTGCTGCAGGGTCAg > 6:71239/1‑149 (MQ=255) gacCTGTGGGGGCCTTGTGTCGCGATAGGGCTGCGCAGCAGCCCC‑‑AGGATCAGGCAGGCAGATTAGATCTTGTCGAACAGGCTTAGCTGAGAAATGCGCGCAAACGCCAGTTGCGAAGCTTCAAGCATGGCCTGCTGCAGGGTCAGCt > 4:122962/1‑148 (MQ=255) acCTGTGGGGGCCTTGTGTCGCGATAGGGCTGCGCAGCAGCCCC‑‑AGGATCAGGCAGGCAGATTAGATCTTGTCGAACAGGCTTAGCTGAGAAATGCGCGCAAACGCCAGTTGCGAAGCTTCAAGCATGGCCTGCTGCAGGGTCAGCTGa < 5:71239/149‑1 (MQ=255) cTGTGGGGGCCTTGTGTCGCGATAGGGCTGCGCAGCAGCCCC‑‑AGGATCAGGCAGGCAGATTAGATCTTGTCGAACAGGCTTAGCTGAGAAATGCGCGCAAACGCCAGTTGCGAAGCTTCaa > 7:169799/1‑121 (MQ=255) cTGTGGGGGCCTTGTGTCGCGATAGGGCTGCGCAGCAGCCCC‑‑AGGATCAGGCAGGCAGATTAGATCTTGTCGAACAGGCTTAGCTGAGAAATGCGCGCAAACGCCAGTTGCGAAGCTTCaa < 8:169799/121‑1 (MQ=255) tgGGGGCCTTGTGTCGCGATAGGGCTGCGCAGCAGCCCC‑‑AGGATCAGGCAGGCAGATTAGATCTTGTCGAACAGGCTTAGCTGAGAAATGCGCGCAAACGCCAGTTGCGAAGCTTCAAGCATGGCCTGCTGCAGGGTCAGCTGAAtg < 5:56742/147‑1 (MQ=255) cTTGTGTCGCGATAGGGCTGCGCAGCAGCCCC‑‑AGGATCAGGCAGGCAGATTAGATCTTGTCGAACAGGCTTAGCTGAGAAATGCGCGCAAACGCCAGTTGCGAAGCTTCAAGCATGGCCTGCTGCAGGGTCAGCTGAATGGTGGCCGAg < 2:79216/149‑1 (MQ=255) gtCGCGATAGGGCTGCGCAGCAGCCCC‑‑AGGATCAGGCAGGCAGATTAGATCTTGTCGAACAGGCTTAGCTGAGAAATGCGCGCAAACGCCAGTTGCGAAGCTTCAAGCATGGCCTGCTGCAGGGTCAGCTGAATGGTGGCCGAGGCCAt < 1:278806/149‑1 (MQ=255) tCGCGATAGGGCTGCGCAGCAGCCCC‑‑AGGATCAGGCAGGCAGATTAGATCTTGTCGAACAGGCTTAGCTGAGAAATGCGCGCAAACGCCAGTTGCGAAGCTTCAAGCATGGCCTGCTGCAGGGTCAGCTGAATGGTGGCCGAGGCCATg > 1:39258/1‑149 (MQ=255) cgcgATAGGGCTGCGCAGCAGCCCC‑‑AGGATCAGGCAGGCAGATTAGATCTTGTCGAACAGGCTTAGCTGAGAAATGCGCGCAAACGCCAGTTGCGAAGCTTCAAGCATGACCTGCTGCAGGGTCAGCTGAATGGTGGCCGAGGCCATGt > 3:141877/1‑149 (MQ=255) tcctggggCTGCTGCGCAGCCCC‑‑AGGATCAGGCAGGCAGATTAGATCTTGTCGAACAGGCTTAGCTGAGAAATGCGCGCAAACGCCAGTTGCGAAGCTTCAAGCATGGCCTGCTGCAGGGTCAGCTGAATGGTGGCCGAGGCCATGt < 6:275634/142‑1 (MQ=255) tcctggggCTGCTGCGCAGCCCC‑‑AGGATCAGGCAGGCAGATTAGATCTTGTCGAACAGGCTTAGCTGAGAAATGCGCGCAAACGCCAGTTGCGAAGCTTCAAGCATGGCCTGCTGCAGGGTCAGCTGAATGGTGGCCGAGGCCATGt < 6:275632/142‑1 (MQ=255) tcctggggCTGCTGCGCAGCCCC‑‑AGGATCAGGCAGGCAGATTAGATCTTGTCGAACAGGCTTAGCTGAGAAATGCGCGCAAACGCCAGTTGCGAAGCTTCAAGCATGGCCTGCTGCAGGGTCAGCTGAATGGTGGCCGAGGCCATGt > 5:275634/6‑147 (MQ=255) tcctggggCTGCTGCGCAGCCCC‑‑AGGATCAGGCAGGCAGATTAGATCTTGTCGAACAGGCTTAGCTGAGAAATGCGCGCAAACGCCAGTTGCGAAGCTTCAAGCATGGCCTGCTGCAGGGTCAGCTGAATGGTGGCCGAGGCCATGt > 5:275632/6‑147 (MQ=255) tggggCTGCTGCGCAGCCCC‑‑AGGATCAGGCAGGCAGATTAGATCTTGTCGAACAGGCTTAGCTGAGAAATGCGCGCAAACGCCAGTTGCGAAGCTTCAAGCATGGCCTGCTGCAGGGTCAGCTGAATGGTGGCCGAGGCCATGTCAGTa > 8:77460/3‑149 (MQ=255) cgcAGCAGCCCC‑‑AGGATCAGGCAGGCAGATTAGAt < 3:85378/35‑1 (MQ=255) cgcAGCAGCCCC‑‑AGGATCAGGCAGGCAGATTAGAt > 4:85378/1‑35 (MQ=255) cgcAGCAGCCCC‑‑AGGATCAGGCAGGCAGATTAGATCTTGTCGAACAGGCTTAGCTGAGAAATGCGCGCAAACGCCAGTTGCGAAGCTTCAAGCATGGCCTGCTGCAGGGTCAGCTGAATGGTGGCCGAGGCCATGTCAGTATCGCCaa < 5:105826/148‑1 (MQ=255) cgcAGCAGCCCC‑‑AGGATCAGGCAGGCAGATTAGATCTTGTCGAACAGGCTTAGCTGAGAAATGCGCGCAAACGCCAGTTGCGAAGCTTCAAGCATGGCCTGCTGCAGGGTCAGCTGAATGGTGGCCGAGGCCATGTCAGTATCGCCaa < 2:77770/148‑1 (MQ=255) gcagcaGCCCC‑‑AGGATCAGGCAGGCAGATTAGATCTTGTCGAACAGGCTTAGCTGAGAAATGCGCGCAAACGCCAGTTGCGAAGCTTCAAGCATGGCCTGCTGCAGGGTCAGCTGAATGGTGGCCGAGGCCATGTCAGTATCGCCAATg < 3:122962/149‑1 (MQ=255) | GGGCACTGGACCCCGAATGATCAGCTTCGCAGCAGATATCGATGGGGCCGCATCGCGGCCCTTTCGCGACGCAAGGCCGCTCCCACGAATACGCCACCTCCAGGAGAGAGGACGACCTGTGGGGGCCTTGTGTCGCGATAGGGCTGCGCAGCAGCCCC‑‑AGGATCAGGCAGGCAGATTAGATCTTGTCGAACAGGCTTAGCTGAGAAATGCGCGCAAACGCCAGTTGCGAAGCTTCAAGCATGGCCTGCTGCAGGGTCAGCTGAATGGTGGCCGAGGCCATGTCAGTATCGCCAATG > NC_002947/4971807‑4972102 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |