Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_002947 5,097,232 G→T 12.0% intergenic (+223/+69) PP_mr66 → / ← acsA‑I P6/acetyl‑CoA synthetase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0029475,097,2320GT12.0% 88.3 / 4.8 34intergenic (+223/+69)PP_mr66/acsA‑IP6/acetyl‑CoA synthetase
Reads supporting (aligned to +/- strand):  ref base G (18/10);  new base T (2/2);  total (20/14)
Fisher's exact test for biased strand distribution p-value = 6.20e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.85e-01

ACAAAATGCTGACTCCGATGCACCGAAACGGGCCGGAATTGTTTCCTGGCGCCCCGAACCTGTGCGGGGCCGGTGACAGAACAGTAACCGATGATTGTCGGGTAACAATGCAAAAGCGGGCTTGCCCGCGAATGCGTGAGGTCAGGGGACAGCTTAGCCTGAACTGACGCATTCGCGGGCAAGCCCGCTCCTGCAGGGGGTATTGCCGGGAAGGGTTTACGCCGAAGCCAGGTTCATCGCCTTGTGGGTATCGATCAGGTGCTGTACCACACCCGGGTCAGCCAAGGTCGAGAT  >  NC_002947/5097085‑5097378
                                                                                                                                                   |                                                                                                                                                   
acaAAATGCTGACTCCGATGCACCGAAACGGGCCGGAATTGTTTCCTGGCGCCCCGAACCTGTGCGGGGCCGGTGACAGAACAGTAACCGATGATTGTCGGGTAACAATGCAAAAGCGGGCTTGCCCGCGAATGCGTGAGGTCAGGGGa                                                                                                                                                    >  7:215398/1‑149 (MQ=255)
      tGCTGACTCCGATGCACCGAAACGGGCCGGAATTGTTTCCTGGCGCCCCGAACCTGTGCGGGGCCGGTGACAGAACAGTAACCGATGATTGTCGGGTAACAATGCAAAAGCGGGCTTGCCCGCGAATGCGTGAGGTCAGGGGACAGCtt                                                                                                                                             >  8:289557/1‑149 (MQ=255)
           aCTCCGATGCACCGAAACGGGCCGGAATTGTTTCCTGGCGCCCCGAACCTGTGCGGGGCCGGTGACAGAACAGTAACCGATGATTGTCGGGTAACAATGCAAAAGCGGGCTTGCCCGCGAATGCGTGAGGTCAGGGGACAGCTTAGCCt                                                                                                                                        >  8:234836/1‑149 (MQ=255)
           aCTCCGATGCACCGAAACGGGCCGGAATTGTTTCCTGGCGCCCCGAACCTGTGCGGGGCCGGTGACAGAACAGTAACCGATGATTGTCGGGTAACAATGCAAAAGCGGGCTTGCCCGCGAATGCGTGAGGTCAGGGGACAGCTTAGCCt                                                                                                                                        <  6:10014/149‑1 (MQ=255)
               cGATGCACCGAAACGGGCCGGAATTGTTTCCTGGCGCCCCGAACCTGTGCGGGGCCGGTGACAGAACAGTAACCGATGATTGTCGGGTAACAATGCAAAAGCGGGCTTGCCCGCGAATGCGTGAGGTCAGGGGACAGCTTAGCCTGAAc                                                                                                                                    >  4:212335/1‑149 (MQ=255)
                 aTGCACCGAAACGGGCCGGAATTGTTTCCTGGCGCCCCGAACCTGTGCGGGGCCGGTGACAGAACAGTAACCGATGATTGTCGGGTAACAATGCAAAAGCGGGCTTGCCCGCGAATGCGTGAGGTCAGGGGACAGCTTAGCCTGAACTg                                                                                                                                  <  3:305026/149‑1 (MQ=255)
                   gCACCGAAACGGGCCGGAATTGTTTCCTGGCGCCCCGAAGCTGTGCGGTGCCGGTGACAGAACAGTAACCGATGATTGTCGGGTAACAATGCAAAAGCGGGCTTGCCCGCGAATGCGTGAGGTCAGGGGACAGCTTAGCCTGAACTGa                                                                                                                                 <  2:35588/148‑1 (MQ=255)
                    cACCGAAACGGGCCGGAATTGTTTCCTGGCGCCCCGAACCTGTGCGGGGCCGGTGACAGAACAGTAACCGATGATTGTCGGGTAACAATGCAAAAGCGGGCTTGCCCGCGAATGCGTGAGGTCAGGGGACAGCTTAGCCTGAACTGAc                                                                                                                                <  6:320731/148‑1 (MQ=255)
                            cGGGCCGGAATTGTTTCCTGGCGCCCCGAACCTGTGCGGGGCCGGTGACAGAACAGTAACCGATGATTGTCGGGTAACAATGCAAGAGCGGGCTTGCCCGCGAATGCGTCAGTTCAGGCTAAGCTGTCCCCTGACCTCACGCATTcgcg                                                                                                                       <  7:222303/149‑1 (MQ=18)
                              ggCCGGAATTGTTTCCTGGCGCCCCGAACCTGTGCGGGGCCGGTGACAGAACAGTAACCGATGATTGTCGGGTAACAATGCAAAAGCGGGCTTGCCCGCGAATGCGTGAGGTCAGGGGACAGCTTGGGCTGAACTGCCGCATTCGCggg                                                                                                                     >  4:98277/1‑149 (MQ=255)
                              ggCCGGAATTGTTTCCTGGCGCCCCGAACCTGTGCGGGGCCGGTGACAGAACAGTAACCGATGATTGTCGGGTAACAATGCAAAAGCGGGCTTGCCCGCGAATGCGTGAGGTCAGGGGACAGCTTAGCCTGAACTGACGCATTCGCggg                                                                                                                     <  3:212335/149‑1 (MQ=255)
                              ggCCGGAATTGTTTCCTGGCGCCCCGAACCTGTGCGGGACCGGTGACAGAACAGTAACCGATGATTGTCGGGTAACAATGCAAAAGCGGGCTTGCCCGCGAATGCGTGAGGTCAGGGGACAGCTTAGCCTGAACTGACGCATTCGCggg                                                                                                                     <  4:113354/149‑1 (MQ=255)
                                     aTTGTTTCCTGGCGCCCCGAACCTGTGCGGGGCCGGTGACAGAACAGTAACCGATGATTGTCGGGTAACAATGCAAAAGCGGGCTTGCCCGCGAATGCGTGAGGTCAGGGGACAGCTTAGCCTGAACTGACGCATTCGCGGGCAAGccc                                                                                                              <  7:234836/149‑1 (MQ=255)
                                        gTTTCCTGGCGCCCCGAACCTGTGCGGGGCCGGTGACAGAACAGTAACCGATGATTGTCGGGTAACAATGCAAAAGCGGGCTTGCCCGCGAATGCGTGAGGTCAGGGGACAGCTTAGCCTGAACTGACGCATTCGCGGGCAAGCCCGc                                                                                                            <  3:98277/148‑1 (MQ=255)
                                                                cGGGGCCGGTGACAGAACAGTAACCGATGATTGTCGGGTAACAATGCAAAAGCGGGCTTGCCCGCGAATGCGTCAGTTCAGGCTAAGCTGTCCCCTGACCTCACGCATTcgc                                                                                                                        >  6:160903/1‑112 (MQ=14)
                                                                cGGGGCCGGTGACAGAACAGTAACCGATGATTGTCGGGTAACAATGCAAAAGCGGGCTTGCCCGCGAATGCGTCAGTTCAGGCTAAGCTGTCCCCTGACCTCACGCATTcgc                                                                                                                        <  5:160903/112‑1 (MQ=14)
                                                                  gggCCGGTGACAGAACAGTAACCGATGATTGTCGGGTAACAATGCAAAAGCGGGCTTGCCCGCGAATGCGTGAGGTGAGGGGGCAGCGTAGGCGGAACAGCCGCATTAGCGGGGAATCCCGCACCAGCAGGGGGGTTTGCCGGGAAggg                                                                                 >  4:206392/1‑149 (MQ=255)
                                                                             aGAACAGTAACCGATGATTGTCGGGTAACAATGCAAAAGCGGGCTTGCCCGCGAATGCGGGAGGTGAGGGGACAGCGTAGCCTGAACTGCCGCATTAGCGGGCCAGCCCCCGCCGGCAGGGGGTTTTGCCGGGAAGGGTTTTCGCCg                                                                        >  8:43444/1‑147 (MQ=255)
                                                                              gAACAGTAACCGATGATTGTCGGGTAACAATGCAAAAGCGGGCTTGCCCGCGAATGCGTGAGGTCAGGGGACAGCTTAGCCTGAACTGACGCATTAGCGGGCAAGCCCGCTCCTGCAGGGGGTATTGCCGGGaa                                                                                    >  5:130468/1‑134 (MQ=255)
                                                                                 cAGTAACCGATGATTGTCGGGTAACAATGCAAAAGCGGGCTTGCCCGCGAATGCGTGAGGTCAGGGGACAGCTTAGCCTGAAATGAAGCATTAGCGGGCAAGCCCGCTCCTGCAGGGGGTATTGCCGGGAAGGGTTTAAGCCGAAGc                                                                    >  5:340414/1‑147 (MQ=255)
                                                                                      aCCGATGATTGTCGGGTAACAATGCAAAAGCGGGCTTGCCCGCGAATGGGGGAGGGCAGGGGGCCGGGTTGCCGGGACAGGCGCCTTAGCGGGGAAGCCCGCGCCGGGAGGGGGGGTTGGCGGGGTGGGGTTTCGGCGTCGCCAgggtg                                                             >  6:194302/1‑146 (MQ=255)
                                                                                                          aaTCCAAACGCGGGCTGCCCCGCTAAGGCGTCAGGCCGGGGCACACCTTCCCCTCACCTGCCGCTTGCGCGGCCAACCCCGCTCCTGCAGGGGGTATTGCCGGGAAGGGTTTACGCCGAAGCCAGGTTCATCGCCTTGTGGGTATCGAt                                         <  7:289557/149‑1 (MQ=255)
                                                                                                               aaaaGCGGGCTTGCCCGCGAATGCGTGAGGTGAGGGGACAGCGTAGCCTGAACTGACGCATTCGCGGGCAAGCCCGCTGCTGGAGGGGGTATTGCCGGGAAGGGTTTACGCCGAAGCCAGGTTCATCGCCgtgt                                                   >  3:298107/1‑134 (MQ=39)
                                                                                                                aacgggggCTTGCCCGCTAAGGGGTGAGTTCAGGGCACCGCTTAGCCTAAACTGACGCATTGGCGGGCAAGCCCGCTCCTGCAGGGGGTATTGCCGGGAAGGGTTTACGCCGAAGCCAGGTTCATCGCCTTGTGGGTATCGATCAGGTg                                   <  6:340414/144‑1 (MQ=255)
                                                                                                                 aaGCGGGCTTGCCCGCGAATGCGTGAGGTCAGGGGACAGCTTAGCCTGAACTGACGCATTCGCGGGCAAGCCCGCTCCTGCAGGGGGTATTGCCGGGAAGGGTTTACGCCGAAGCCAGGTTCATCGCCTTGTGGGTATCGATCAGGTGc                                  >  3:242275/1‑149 (MQ=255)
                                                                                                                   gCGGGCTTGCCCGCGAATGCGTGAGGTCAGGGGACAGCTTAGCCTGAACTGACGCATTCGCGGGCAAGCCCGCTCCTGCAGGGGGTATTGCCGGGAAGGGTTTACGCCGAAGCCAGGTTCATCGCCTTGTGGGTATCGATCAGGTGCTg                                >  1:45323/1‑149 (MQ=255)
                                                                                                                     gggCTTGCCCGCGAATGCGTGAGGTCAGGGGACAGCTTAGCCTGAACTGACGCATTCGCGGGCAAGCCCGCTCCTGCAGGGGGTATTGCCGGGAAGGGTTTACGCCGAAGCCAGGTTCATCGCCTTGTGGGTATCGATCAGGTGCTGTa                              >  1:96479/1‑149 (MQ=255)
                                                                                                                             ccGCGAATGCGTGAGGTCAGGGGACAGCTTAGCCTGAACTGACGCATTCGCGGGCAAGCCCGCTCCTGCAGGGGGTATTGCCGGGAAGGGTTTACGCCGAAGCCAGGTTCATCGCCTTGTGGGTATCGATCAGGTGCTGTACCACAccc                      >  8:7218/1‑149 (MQ=255)
                                                                                                                              cgcgAATGCGTGAGGTCAGGGGACAGCTTAGCCTGAACTGACGCATTCGCGGGCAAGCCCGCTCCTGCAGGGGGTATTGCCGGGAAGGGTTTACGCCGAAGCCAGGTTCATCGCCTTGTGGGTATCGATCAGGTGCTGTACCACACCCg                     >  6:20557/1‑149 (MQ=255)
                                                                                                                               gctaaTGCGTGAGGGCAGGGGACTGATTTGCCTTAACTGACGTATTCGGGGGAAAGCCCGCTCCTGCAGGGGGTATTGCCGGGAAGGGTTTACGCCGAAGCCAGGTTCATCGCCTTGTGGGTATCGATCAGGTGCTGTACCACACCCgg                    <  2:77404/146‑1 (MQ=255)
                                                                                                                               gcgAATGCGTCAGTTCAGGCTAAGCTGTCCCCTGACCTCACGCATTCGCGGGCAAGCCCGCTTTTGCAGGGGGTATTGCCGGGAAGGGTTTACGCCGAAGCCAGGTTCATCGCCTTGTGGGTATCGATCAGGTGCTGTACCACACCCgg                    >  6:116818/1‑149 (MQ=18)
                                                                                                                                       gTGAGGTCAGGGGACAGCTTAGCCTGAACTGACGCATTCGCGGGCAAGCCCGCTCCTGCAGGGGGTATTGCCGGGAAGGGTTTACGCCGAAGCCAGGTTCATCGCCTTGTGGGTATCGATCAGGTGCTGTACCACACCCGGGTCAGcc             >  1:43898/1‑148 (MQ=255)
                                                                                                                                       gTGAGGTCAGGGGACAGCTTAGCCTGAACTGACGCATTCGCGGGCAAGCCCGCTCCTGCAGGGGGTATTGCCGGGAAGGGTTTACGCCGAAGCCAGGTTCATCGCCTTGTGGGTATCGATCAGGTGCTGTACCACACCCGGGTCAGcc             >  1:230204/1‑148 (MQ=255)
                                                                                                                                               aGGGGACAGCTTAGCCTGAACTGACGCATTCGCGGGCAAGCCCGCTCCTGCAGGGGGTATTGCCGGGAAGGGTTTACGCCGAAGCCAGGTTCATCGCCTTGTGGGTATCGATCAGGTGCTGTACCACACCCGGGTCAGCCAAGGTCga     <  2:43898/148‑1 (MQ=255)
                                                                                                                                                 gggACAGCTTAGCCTGAACTGACGCATTCGCGGGCAAGCCCGCTCCTGCAGGGGGTATTGCCGGGAAGGGTTTACGCCGAAGCCAGGTTCATCGCCTTGTGGGTATCGATCAGGTGCTGTACCACACCCGGGTCAGCCAAGGTCgaga   >  4:230055/1‑148 (MQ=255)
                                                                                                                                                 gggACAGCTTAGCCTGAACTGACGCATTCGCGGGCAAGCCCGCTCCTGCAGGGGGTATTGCCGGGAAGGGTTTACGCCGAAGCCAGGTTCATCGCCTTGTGGGTATCGATCAGGTGCTGTACCACACCCGGGTCAGCCAAGGTCGAGat  <  5:20557/149‑1 (MQ=255)
                                                                                                                                                   |                                                                                                                                                   
ACAAAATGCTGACTCCGATGCACCGAAACGGGCCGGAATTGTTTCCTGGCGCCCCGAACCTGTGCGGGGCCGGTGACAGAACAGTAACCGATGATTGTCGGGTAACAATGCAAAAGCGGGCTTGCCCGCGAATGCGTGAGGTCAGGGGACAGCTTAGCCTGAACTGACGCATTCGCGGGCAAGCCCGCTCCTGCAGGGGGTATTGCCGGGAAGGGTTTACGCCGAAGCCAGGTTCATCGCCTTGTGGGTATCGATCAGGTGCTGTACCACACCCGGGTCAGCCAAGGTCGAGAT  >  NC_002947/5097085‑5097378

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: