| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 5,149,183 | G→C | 5.8% | intergenic (‑169/+279) | PP_mr51 ← / ← PP_4535 | C4 ncRNA/hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 5,149,183 | 0 | G | C | 5.8% | 273.2 / 6.1 | 86 | intergenic (‑169/+279) | PP_mr51/PP_4535 | C4 ncRNA/hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base G (39/42); new base C (3/2); total (42/44) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.73e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.37e-01 | |||||||||||
AATTTGAGTCGGCCTGTCAAAGCCGGTCGTTGAATGGCAACGACCAAGCGAGACTAGTGGCCAACTCGGAACTGCACAATGGGCGACAGTATCTTTGGGAAATGTCCTACAAGAAAGGGGCAAAATCTGATTTTTTTAGCCGTTAGGCGTAACGGCATGTAACGCGCACACACCGTGAGTAAAGTGTTTTTCTGCGTGGAGGCACGCCTGGCGGTGCATAGCGCATAACGCTCAATCAAGGGCACTCGCCTTGTAACTATGCGCGCGTCTTGAGTCGCTGTGCATTCTGAATGA > NC_002947/5149035‑5149328 | aaTTTGAGTCGGCCTGTCAAAGCCGGTCGTTGAATGGCAACGACCAAGCGAGACTAGTGGCCAACTCGGAACTGCACAATGGGCGACAGTATCTTTGGGAAATGTCCTACAAGAAAGGGGCAAAATCTGATTTTTTTAGCCGTTAGGCg > 8:258840/1‑149 (MQ=255) gTCGGCCTGTCAAAGCCGGTCGTTGAATGGCAACGACCAAGCGAGACTAGTGGCCAACTCGGAACTGCACAATGGGCGACAGTATCTTTGGGAAATGTCCTACAAGAAAGGGGCAAAATCTGATTTTTTTAGCCGTTAGGCGTAACgg > 7:228144/1‑148 (MQ=255) gCCTGTCAAAGCCGGTCGTTGAATGGCAACGACCAAGCGAGACTAGTGGCCAACTCGGAACTGCACAATGGGCGACAGTATCTTTGGGAAATGTCCTACAAGAAAGGGGCAAAATCTGATTTTTTTAGCCGTTAGGCGTAACGGCATg > 3:156170/1‑148 (MQ=255) gTCAAAGCCGGTCGTTGAATGGCAACGACCAAGCGAGACTAGTGTCCAACTCGGAACTGCACAATGGGCGACAGTATCTTTGGGAAATGTACTACAAGAAAGGGGCAAAATATGATTTTTTTCTCCTTTAGGCGTAACTGCATGTAAcg > 4:208078/1‑149 (MQ=255) gTCAAAGCCGGTCGTTGAATGGCAACGACCAAGCGAGACTAGTGGCCAACTCGGAACTGCACAATGGGCGACAGTATCTTTGGGAAATGTCCTACAAGAAAGGGGCAAAATCTGATTTTTTTAGCCGTTAGGCGTAACGGCAGGTAAcg > 4:83943/1‑149 (MQ=255) aaGCCGGTCGTTGAATGGCAACGACCAAGCGAGACTAGTGGCCAACTCGGAACTGCACAATGGGCGACAGTATCTTTGGGAAATGTCCTACAAGAAAGGGGCAAAATCTGATTTTTTTAGCCGTTAGGCGTAACGGCATGTAACGCGca > 4:192354/1‑149 (MQ=255) aGCCGGTCGTTGAATGGCAACGACCAAGCGAGACTAGTGGCCAACTCGGAACTGCACAATGGGCGACAGTATCTTTGGGAAATGTCCTACAAGAAAGGGGCAAAATCTGATTTTTTTAGCCGTTAGGCGTAACGGCATGTAACGCGcac < 7:258840/149‑1 (MQ=255) ccGGTCGTTGAATGGCAACGACCAAGCGAGACTAGTGGCCAACTCGGAACTGCACAATGGGCGACAGTATCTTTGGGAAATGTCCTACAAGAAAGGGGCAAAATCTGATTTTTTTAGCCGTTAGGCGTAACGGCATGTAACGCGcaca > 4:67596/1‑148 (MQ=255) ggTCGTTGAATGGCAACGACCAAGCGAGACTAGTGGCCAACTCGGAACTGCACAATGGGCGACAGTATCTTTGGGAAATGTCATACAAGAAAGGGGCAAAATCGGATTTTTTTAGCCGTTAGGCGTAACGGCATGTAACGCGCacacac > 4:195983/1‑149 (MQ=255) cGTTGAATGGCAACGACCAAGCGAGACTAGTGGCCAACTCGGAACTGCACAATGGGCGACAGTATCTTTGGGAAATGTCCTACAAGAAAGGGGCAAAATCTGATTTTTTTAGCCGTTAGGCGTAACGGCATGTAACGCGCACACACCGt > 2:315884/1‑149 (MQ=255) gTTGAATGGCCACGACCAAGCGAGACTAGTGGCCAACTCGGAACTGCACAAGGGGCGACATTATCTTTGGGAAATGTCCTACAAGAAAGGGGCAAAATCTGATTTTTTTAGCCGTTAGGCGTAACGGCATGTAACGCGCACACACCgg < 4:213744/148‑2 (MQ=255) gTTGAATGGCAACGACCAAGCGAGACTAGTGGCCAACTCGGAACTGCACAATGGGCGACAGTATCTTTGGGAAATGTCCTACAAGAAAGGGGCAAAATCTGATTTTTTTAGCCGTTAGGCGTAACGGCATGTAACGCGCACACACCGt < 8:259179/148‑1 (MQ=255) gTTGAATGGCAACGACCAAGCGAGACTAGTGGCCAACTAGGAACTGCACAATGGGCGACAGTATCTTTGGGAAATGTCCTACAAGAAAGGGGCAAAATCTGATTTTTTTAGCCGTTAGGCGTAACGGCATGTAACGCGCACACACCGt < 2:294088/148‑1 (MQ=255) gAATGGCAACGACCAAGCGAGACTAGTGGCAAACTCGGAACTGCACAATGGGCGACAGTATCTTTGGGAAATGTCCTACAAGAAAGGGGCAAAATCTGATATTTTTAGCCGTTAGGCGTAACGGCATGTAACGCGCAGACACCGTTAg > 7:140555/1‑148 (MQ=255) aCGACCCAGCGAGACTAGTGGCCAACTCGGAACTGCACAATGCGCGACAGTATCTTTGGGAAAAGTCCTACAAGAAAGGGGCAAAATCTGATTTTTTTAGCCGTTAGGCGTAACGGCATGTAACGCGCACACACCGTGAGTAAAGTGtt < 8:140555/149‑1 (MQ=255) cGACCAAGCGAGACTAGTGGACAACTCGGAACTGCACAATGGGCGACAGTATCTTTGGGAAATGTGCTACAAGAAAGGGTCAAATTCTGATTTTTTTAGCCGTTAGGCGTAACGGCATGTAACGCGCACACACCGTGAGTAAAGTGttt < 3:208078/149‑1 (MQ=255) ccAAGCGAGACTAGTGGCCAACTCGGAACTGCACAATGGGCGACAGTATCTTTGGGAAATGTCCTACAAGAAAGGGGCAAAATCTGATTTTTTTAGCCGTTAGGCGTAACGGCATGTAACGCGCACACACCGTGAGTAAAGTGTTTTTc > 1:335308/1‑149 (MQ=255) ccAAGCGAGACTAGTGGCCAACTCGGAACTGCACAATGGGCGACAGTATCTTTGGGAAATGTCCTACAAGAAAGGGGCAAAATCTGATTTTTTTAGCCGTTAGGCGTAACGGCATGTAACGCGCACACACCGTGAGTAAAGTGTTTTTc > 3:175479/1‑149 (MQ=255) aGCGAGACTAGTGGCCAACTCGGAACTGCACAATGGGCGACAGTATCTTTGGGAAATGTCCTACAAGAAAGGGGCAAAATCTGATTTTTTTAGCCGTTAGGCGTAACGGCATGTAACGCGCACACACCGTGAGTAAAGTGTTTTTCTGc > 6:183264/1‑149 (MQ=255) aGCGAGACTAGTGGCCAACTCGGAACTGCACAATGGGCGACAGTATCTTTGGGAAATGTCCTACAAGAAAGGGGCAAAATCTGATTTTTTTAGCCGTTAGGCGTAACGGCATGTAACGCGCACACACCGTGAGTAAAGTGTTTTTCTGc > 4:251273/1‑149 (MQ=255) gagaCTAGTGGCCAACTCGGAACTGCACAATGGGCGACAGTATCTTTGGGAAATGTCCTACAAGAAAGGGGCAAAATCTGATTTTTTTAGCCGTTAGGCGTAACGGCATGTAACGCGCACACACCGTGAGTAAAGTGTTTTTCTGCGTg < 8:228144/149‑1 (MQ=255) agaCTAGTGGCCAACTCGGAACTGCACAATGGGCGACAGTATCTTTGGGAAATGTCCTACAAGAAAGGGGCAAAATCTGATTTTTTTAGCCGTTAGGCGTAACGGCATGTAACGCGCACACACCGTGAGTAAAGTGTTTTTCTGCGTgg < 3:67596/149‑1 (MQ=255) gaCTAGTGGCCAACTCGGAACTGCACAATGGGCGACAGTATCTTTGGGAAATGTCCTACAAGAAAGGGGCAAAATCTGATTTTTTTAGCCGTTAGGCGTAACGGCATGTAACGCGCACACACCGTGAGTAAAGTGTTTTTCTGCGTg > 2:60037/1‑147 (MQ=255) gTGGCCAACTCGGAACTGCACAATGGGCGACAGTATCTTTGGGAAATGTCCTACAAGAAAGGGGCAAAATCTGATTTTTTTAGCCGTTAGGCGTAACGGCATGTAACGCGCACACACCGTGAGTAAAGTGTTTTTCTGCGTGGAGGc < 3:192354/147‑1 (MQ=255) gTGGCCAACTCGGAACTGCACAATGGGCGACAGTATCTTTGGGAAATGTCCTACAAGAAAGGGGCAAAATCTGATTTTTTTAGCCGTTAGGCGTAACGGCATGTAACGCGCACACACCGTGAGTAAAGTGTTTTTCTGCGTGGAGGCa < 2:103495/148‑1 (MQ=255) gTGGCCAACTCGGAACTGCACAATGGGCGACAGTATCTTTGGGAAATGTCCTACAAGAAAGGGGCAAAATCTGATTTTTTTAGCCGTTAGGCGTAACGGCATGTAACGCGCACACACCGTGAGTAAAGTGTTTTTCTGCGTGGAGGCAc < 5:183264/149‑1 (MQ=255) gCCAACTCGGAACTGCACAATGGGCGACAGTATCTTTGGGAAATGTCCTACAAGAAAGGGGCAAAATCTGATTTTTTTAGCCGTTAGGCGTAACGGCATGTAACGCGCACACACCGTGAGTAAAGTGTTTTTCTGCGTGGAGGCACGc < 4:156170/148‑1 (MQ=255) gCCAACTCGGAACTGCACAATGGGCGACAGTATCTTTGGGAAATGTCCTACAAGAAAGGGGCAAAATCTGAGTTTTTTAGCCGTTAGGCGTAACGCCATGTAACGCGCACACACCGTGAGTAAAGTGTTTTTCTGCGTGGAGGCACGcc > 6:332717/1‑149 (MQ=255) cAACTCGGAACTGCACAATGGGCGACAGTATCTTTGGGAAATGTCCTACAAGAAAGGGGCAAAATCTGATTTTTTTAGCCGTTAGGCGTAACGGCATGTAACGCGCACACACCGTGAGTAAAgtgt > 1:1864/1‑126 (MQ=255) cAACTCGGAACTGCACAATGGGCGACAGTATCTTTGGGAAATGTCCTACAAGAAAGGGGCAAAATCTGATTTTTTTAGCCGTTAGGCGTAACGGCATGTAACGCGCACACACCGTGAGTAAAgtgt < 2:1864/126‑1 (MQ=255) aCTCGGAACTGCACAATGGGCGACAGTATCTTTGGGAAATGTCCTACAAGAAAGGGGCAAAATCTGATTTTTTTAGCCGTTAGGCGTAACGGCATGTAACGCGCACACACCGTGAGTAAAGTGTTTTTCTGCGTGGAGGCACGCCTGGc < 2:335308/149‑1 (MQ=255) aCTCGGAACTGCACAATGGGCGACAGTATCTTTGGGAAATGTCCTACAAGAAAGGGGCAAAATCTGATTTTTTTAGCCGTTAGGCGTAACGGCATGTAACGCGCACACACCGTGAGTAAAGTGTTTTTCTGCGTGGAGGCACGCCTGGc < 8:260199/149‑1 (MQ=255) tCGGAACTGCACAATGGGCGACAGTATCTTTGGGAAATGTCCTACAAGAAAGGGGCAAAATCTGATTTTTTTAGCCGTTAGGCGTAACGGCATGTAACGCGCACACACCGTGAGTAAAGTGTTTTTCTGCGTGGAGGCACGCCTGGCgg > 7:2114/1‑149 (MQ=255) ggAACTGCACAATGGGCGACAGTATCTTTGGGAAATGTCCTACAAGAAAGGGGCAAAATCTGATTTTTTTAGCCGTTAGGCGTAACGGCATGTAACGCGCACACACCGTGAGTAAAGTGTTTTTCTGCGTgg < 3:323145/132‑1 (MQ=255) ggAACTGCACAATGGGCGACAGTATCTTTGGGAAATGTCCTACAAGAAAGGGGCAAAATCTGATTTTTTTAGCCGTTAGGCGTAACGGCATGTAACGCGCACACACCGTGAGTAAAGTGTTTTTCTGCGTgg > 4:323145/1‑132 (MQ=255) cTGCACCATGTGCGACAGTATCTTTTGGAAATGTCCTACAAGAAAGGGGCAAAATCTGATTTTTTTAGCCGTTAGGCGTAACGGCATGTAACGCGCACACACCGTGAGTAAAGTGTTTTTCTGCGTGGAGGCACGCCTGGCGGTTCATa < 4:8076/149‑1 (MQ=255) cTGCACAATGGGCGACAGTATCTTTGGGAAATGTCCTACAAGAAAGGGGCAAAATCTGATTTTTTTAGCCGTTAGGCGTAACGGCATGTAACGCGCACACACCGTGAGTAAAGTGTTTTTCTGCGTGGAGGCACGCCTGGCGGTGCa > 4:47523/1‑147 (MQ=255) tGCACAATGGGCGACAGTATCTTTGGGAAATGTCCTACAAGAAAGGGGCAAAATCTGATTTTTTTAGCCGTTAGGCGTAACGGCATGTAACGCGCACACACCGTGAGTAAAGTGTTTTTCTGCGTGGAGGCACGCCTGGCGGTGCATAg > 4:183692/1‑149 (MQ=255) gCACAATGGGCGACAGTATCTTTGGGAAATGTCCTACAAGAAAGGGGCAAAATCTGATTTTTTTAGCCGTTAGGCGTAACGGCATGTAACGCGCACACACCGTGAGTAAAGTGTTTTTCTGCGTGGAGGCACGCCTGGCGGTGCATAgc > 1:297020/1‑149 (MQ=255) cacaATGGGCGACAGTATCTTTGGGAAATGTCCTACAAGAAAGGGGCAAAATCTGATTTTTTTAGCCGTTAGGCGTAACGGCATGTAACGCGCACACACCGTGAGTAAAGTGTTTTTCTGCGTGGAGGCACGCCTGGCGGTGCATAg < 3:195983/147‑1 (MQ=255) aaTGGGCGACAGTATCTTTGGGAAATGTCCTACAAGAAAGGGGCAAAATCTGATTTTTTTAGCCGTTAGGCGAAACGGCATGTAACGCGCACACACCGTGAGTAAAGTTTTTTTCTGCGTGCAGGCACGCCTGGCGGTCCTTAGCGCa > 6:181952/1‑148 (MQ=255) gCGACAGTATCTTTGGGAAATGTCCTACAAGAAAGGGGCAAAATCTGATTTTTTTAGCCGTTAGGCGTAACGGCATGTaa > 4:251539/1‑80 (MQ=255) gCGACAGTATCTTTGGGAAATGTCCTACAAGAAAGGGGCAAAATCTGATTTTTTTAGCCGTTAGGCGTAACGGCATGTaa < 3:251539/80‑1 (MQ=255) cGACAGTATCTTTGGGAAATGTCCTACAAGAAAGGGGCAAAATCTCATTTTTTTAGCCGTTAGGCGTAACGGCATGTAACGCGCACACAGGGTGAGTAAAGTGTTTTTCTGCGTGGAGGCACGCCTGGCGGTGCATAGCGCATAACGCt > 2:205182/1‑149 (MQ=255) tATCTTTGGGAAATGTCCTACAAGAAAGGGGCAAAATCTGATTTTTTTAGCCGTTAGGCGTAACGGCATGTAACGCGCACACACCGTGAGTAAAGTGTTTTTCTGCGTGGa > 6:229995/1‑111 (MQ=255) tGGGAAATGTCCTACAAGAAAGGGGCAAAATCTGATTTTTTTAGCCGTTAGGCGTAACGGCATGTAACGCGCACACACCGTGAGTAAAGTGTTTTTCTGCGTGGAGGCACGCCTGGCGGTGCATAGCGCATAACGCTCAATCAAggg < 3:47523/147‑1 (MQ=255) ggAAATGTCCTACAAGAAAGGGGCAAAATCTGATTTTTTTAGCCGTTAGGCGTAACGGCATGTAACGCGCACACACCGTGAGTAAAGTGTTTTTCTGCGTGGAGGCACGCCTGGCGGTGCATAGCGCATAACGCTCAATCAAGGGCACt > 4:110163/1‑149 (MQ=255) ggAAATGTCCTACAAGAAAGGGGCAAAATCTGATTTTTTTAGCCGTTAGGCGTAACGGCATGTAACGCGCACACACCGTGAGTAAAGTGTTTTTCTGCGTGGAGGCACGCCTGGCGGTGCATAGCGCATAACGCTCAATCAAGGGCACt > 8:240282/1‑149 (MQ=255) aaTGTCCTACAAGAAAGGGGCAAAATCTGATTTTTTTAGCCGTTAGGCGTAACGGCATGTAACGCGCACACACCGTGAGTAAAGTGTTTTTCTGCGTGGAGGCACGCCTGGCGGTGCATAGCGCATAACGCTCAATCAAGGGCACTCGc < 4:175479/149‑1 (MQ=255) aTGTCCTACAAGAAAGGGGCAAAATCTGATTTTTTTAGCCGTTAGGCGTAACGGCATGTAACGCGCACACACCGTGAGTAAAGTGTTTTTCTGCGTGGAGGCACGCCTGGCGGTGCATAGCGCATAACGCTCAATCAAGGGCACTCGcc < 2:162591/149‑1 (MQ=255) tCCTACAAGAAAGGGGCAAAATCTGATTTTTTTAGCCGTTAGGCGTAACGGCATGTAACGCGCACACACCGTGAGTAAAGTGTTTTTCTGCGTGGAGGCACGCCTGGCGGTGCATAGCGCATAACGCTCAATCAAGGGCACTCGCCTTg > 2:217709/1‑149 (MQ=255) cTACAAGAAAGGGGCAAAATCTGATTTTTTTAGCCGTTAGGCGTAACGGCATGTAACGCGCACACACCGTGAGTAAAGTGTTTTTCTGCGTGGAGGCACGCCTGGCGGTGCATAGCGCATAACGCTCAATCAAGGGCACTCGCCTTGt < 3:183692/148‑1 (MQ=255) tACAAGAAAGGGGCAAAATCTGATTTTTTTAGCCGTTAGGCGTAACGGCATGTAACGCGCACACACCGTGAGTAAAGTGTTTTTCTGCGTGGAGGCACGCCTGGCGGTGCATAGCGCATAACGCTCAATCAAGGGCACTCGCCTTGTaa > 5:56850/1‑149 (MQ=255) aCAAGAAAGGGGCAAAATCTGATTTTTTTAGCCGTTAGGCGTAACGGCATGTAACGCGCACACACCGTGAGTAAAGTGTTTTTCTGCGTGGAGGCACGCCTGGCGGTGCATAGCGCATAACGCTCAATCAAGGGCACTCGCCTTGTAAc > 8:158808/1‑149 (MQ=255) cAAGAAAGGGGCAAAATCTGATTTTTTTAGCCGTTAGGCGTAACGGCATGTAACGCGCACACACCGTGAGTAAAGTGTTTTTCTGCGTGGAGGCACGCTTGGCGTGCCATAGCGCATAACCGTCAATAATGGCCAGAGGCCTTGAAAc > 7:226874/1‑148 (MQ=255) cAAGAAAGGGGCAAAATCTGATTTTTTTAGCCGTTAGGCGTAACGGCATGTAACGCGCACACACCGTGAGTAAAGTGTTTTTCTGCGTGGAGGCACGCCTgg > 3:245087/1‑102 (MQ=255) cAAGAAAGGGGCAAAATCTGATTTTTTTAGCCGTTAGGCGTAACGGCATGTAACGCGCACACACCGTGAGTAAAGTGTTTTTCTGCGTGGAGGCACGCCTgg < 4:245087/102‑1 (MQ=255) cAAGAAAGGGGCAAAATCTGATTTTTTTAGCCGTTAGGCGTAACGGCATGTAACGCGCACACACCGTGAGTAAAGTGTTTTTCTGCGTGGAGGCACGCCTGGCGGTGCATAGCGCATAACGCTCAATCAAGGGCACTCGCCTTGTaa < 1:315884/147‑1 (MQ=255) aaGAAAGGGGCAAAATCTGATTTTTTTAGCCGTTAGGCGTAACGGCATGTAACGCGCACACACCGTGAGTAAAGTGTTTTTCTGCGTGGAGGCACGCCTGGCGGTGCATAGCGCATAACGCTCAATCAAGGGCACTCGCCTTGTAACTa > 7:219369/1‑149 (MQ=255) aaaGGGGCAAAATCTGATTTTTTTAGCCGTTAGGCGTAACGGCATGTAACGCGCACACACCGTGAGTAAAGTGTTTTTCTGCGTGGAGGCACGCCTGGCGGTGCATAGCGCATAACGCTCAATCAAGGGCACTCGCCTTGTAACTATgc > 5:78018/1‑149 (MQ=255) aaaGGGGCAAAATCTGATTTTTTTAGCCGTTAGGCGTAACGGCATGTAACGCGCACACACCGTGAGTAAAGTGTTTTTCTGCGTGGAGGCACGCCTGGCGGTGCATAGCGCATAACGCTCAATCAAGGGCACTCGCCTTGTAACTATgc > 6:218004/1‑149 (MQ=255) aGGGGCAAAATCTGATTTTTTTAGCCGTTAGGCGTAACGGCATGTAACGCGCACACACCGTGAGTAAAGTGTTTTTCTGCGTGGAGGCACGCCTGGCGGTGCATAGCGCATAACGCTCAATCAAGGGCACTCGCCTTGTAACTATgcgc < 8:2114/149‑1 (MQ=255) gggCAAAATCTGATTTTTTTAGCCGTTAGGCGTAACGGCATGTAACGCGCACACACCGTGAGTAAAGTGTTTTTCTGCGTGGAGGCACGCCTGGCGGTGCATAGCGCATAACGCTCAATCAAGGGCACTCGCCTTGTAACTATgcgcgc < 6:56850/149‑1 (MQ=255) gCAAAATCTGATTTTTTTAGCCGTTAGGCGTAACGGCATGTAACGCGCACACACCGTGAGTAAAGTGTTTTTCTGCGTGGAGGCACGCCTGGCGGTGCATAGCGCATAACGc < 1:310099/112‑1 (MQ=255) gCAAAATCTGATTTTTTTAGCCGTTAGGCGTAACGGCATGTAACGCGCACACACCGTGAGTAAAGTGTTTTTCTGCGTGGAGGCACGCCTGGCGGTGCATAGCGCATAACGCTCAATCAAGGGCACTCGCCTTGTAAc > 7:12882/1‑138 (MQ=255) gCAAAATCTGATTTTTTTAGCCGTTAGGCGTAACGGCATGTAACGCGCACACACCGTGAGTAAAGTGTTTTTCTGCGTGGAGGCACGCCTGGCGGTGCATAGCGCATAACGCTCAATCAAGGGCACTCGCCTTGTAAc < 8:12882/138‑1 (MQ=255) aaaaTCTGATTTTTTTAGCCGTTAGGCGTAACGGCATGTAACGCGCACACACCGTGAGTAAAGTGTTTTTCTGCGTGGAGGCACGCCTGGCGGTGCATAGCGCATAACGCTCAATCAAGGGCACTCGCCTTGTAACTATGCGCGCGTCt < 6:78018/149‑1 (MQ=255) aaaTCTGATTTTTTTAGCCGTTAGGCGTAACGGCATGTAACGCGCACACACCGTGAGTAAAGTGTTTTTCTGCGTGGAGGCACGCCTGGCGGTGCATAGCGCATAACGCTCAATCAAGGGCACTCGCCTTGTAACTATGCGCGCGTCtt < 7:158808/149‑1 (MQ=255) aaaTCTGATTTTTTTAGCCGTTAGGCGTAACGGCATGTAACGCGCACACACCGTGAGTAAAGTGTTTTTCTGCGTGGAGGCACGCCTGGCGGTGCATAGCGCATAACGCTCAATCAAGGGCACTCGCCTTGTAACTATGCGCGCGTCtt < 2:297020/149‑1 (MQ=255) aaaTCTGATTTTTTTAGCCGTTAGGCGTAACGGCATGTAACGCGCACACACCGTGAGTAAAGTGTTTTTCTGCGTGGAGGCACGCCTGGCGGTGCATAGCGCATAACGCTCAATCAAGGGCACTCGCCTTGTAACTATGCGCGCGTCtt < 1:60037/149‑1 (MQ=255) tttttttAGCCGTTAGGCGTAACGGCATGTAACGCGCACACACCGTGAGTAAAGTGTTTTTCTGCGTGGAGGCACGCCTGGCGGTGCATAGCGCATAACGCTCAATCAAGGGCACTCGCCTTGTAACTATGCGCGCGTCTTGAGTCGCt < 7:240282/149‑1 (MQ=255) tttttttAGCCGTTAGGCGTAACGGCATGTAACGCGCACACACCGTGAGTAAAGTGTTTTTCTGCGTGGAGGCACGCCTGGCGGTGCATAGCGCATAACGCTCAATCAAGGGCACTCGCCTTGTAACTATGCGCGCGTCTTGAGTCGCt < 3:251273/149‑1 (MQ=255) ttttAGCCGTTAGGCGTAACGGCATGTAACGCGCACACACCGTGAGTAAAGTGTTTTTCTGCGTGGAGGCACGCCTGGCGGTGCATAGCGCATAACGCTCAATCAAGGGCACTCGCCTTGTAACTATGCGCGCGTCTTGAGTCGCtgt < 8:219369/148‑1 (MQ=255) ttAGCCGTTAGGCGTAACGGCATGTAACGCGCACACACCGTGAGTAAAGTGTTTTTCTGCGTGGAGGCACGCCTGGCGGTGCATAGCGCATAACGCTCAATCAAGGGCACTCGCCTTGTAACTATGCGCGCGTCTTGAGTCGCTGTGc < 3:110163/148‑1 (MQ=255) catgCCGTTACGCCTAACGGCATGTAACGCGCACACACCGTGAGTAAAGTGTTTTTCTGCGTGGAGGCACGCCTGGCGGTGCATAGCGCATAACGCTCAATCAAGGGCACTCGCCTTGTAACTATGCGCGCGTCTTGAGTCGCTGTGCa > 6:43279/4‑149 (MQ=255) atgCCGTTACGCCTAACGGCATGTAACGCGCACACACCGTGAGTAAAGTGTTTTTCTGCGTGGAGGCACGCCTGGCGGTGCATTGCGCATAACGCTCAATCAAGGGCACTCGCCTTGTAACTATGCGCGCGTCTTGAGTCGCTGTGCAt > 7:221476/3‑149 (MQ=255) tgCCGTTACGCCTAACGGCATGTAACGCGCACACACCGTGAGTAAAGTGTTTTTCTGCGTGGAGGCACGCCTGGCGGTGCATAGCGCATAACGCTCAATCAAGGGCACTCGCCTTGTAACTAt < 7:12364/122‑1 (MQ=255) tgCCGTTACGCCTAACGGCATGTAACGCGCACACACCGTGAGTAAAGTGTTTTTCTGCGTGGAGGCACGCCTGGCGGTGCATAGCGCATAACGCTCAATCAAGGGCACTCGCCTTGTAACTAt > 8:12364/2‑123 (MQ=255) gCCGTTAGGCGTAACGGCATGTAACGCGCACACACCGTGAGTAAAGTGTTTTTCTGCGTGGAGGCACGCCTGGCGGTGCATAGCGCATAACGCTCAATCAAGGGCACTCGCCTTGTAACTATGCGCGCGTCTTGAGTCGCTGTGc > 8:33371/1‑145 (MQ=255) gCCGTTAGGCGTAACGGCATGTAACGCGCACACACCGTGAGTAAAGTGTTTTTCTGCGTGGAGGCACGCCTGGCGGTGCATAGCGCATAACGCTCAATCAAGGGCACTCGCCTTGTAACTATGCGCGCGTCTTGAGTCGCTGTGc < 7:33371/145‑1 (MQ=255) ccGATAGGCGTAACGGCATGTAACGAGCACACACCGTGAGTAAAGTGTTTTTATGCGTGGAGGCACGCCTGGCGGTGCATAGCGCATAAAGCTCAATCAAGGGCACTCGCCTTGAAACTATGCGCGCGTCATGAGTAGCTGTGCATTCt > 2:69403/1‑149 (MQ=255) gTTAGGCGTAACGGCATGTAACGCGCACACACCGTGAGTAAAGTGTTTTTCTGCGTGGAGGCACGCCTGGCGGTGCATAGCGCATAACGCTCAATCAAGGGCACTCGCCTTGTAACTATGCGCGCGTCTTGAGTCGCTGTGCATTCTGa < 1:69403/149‑1 (MQ=255) gTTAGGCGTAACGGCATGTAACGCGCACACACCGCGAGTAAAGTGTTTTTCTGCGTGGAGGCACGCCTGGCGGTGCATAGCGCATAACGCTCAATCAAGGGCACTCGCCTTGTAACTATGCGCGCGTCTTGAGTCGCTGTGCATTCTg > 4:159527/1‑148 (MQ=255) gTTACGCCTAACGGCATGTAACGCGCACACACCGTGAGTAAAGTGTTTTTCTGCGTGGAGGCACGCCTGGCGGTGCATAGCGCATAACGCTCAATCAAGGGCACTCGCCTTGTAACTATGCGCGCGTCTTGAGTCGCTGTGCATTCTGa < 5:43279/149‑1 (MQ=255) ttAGGCGTAACGGCATGTAACGCGCACACACCGCGAGTAAAGTGTTTTTCTGCGTGGAGGCACGCCTGGCGGTGCATAGCGCATAACGCTCAATCAAGGGCACTCGCCTTGTAACTATGCGCGCGTCTTGAGTCGCTGTGCATTCTGaa < 3:159527/149‑1 (MQ=255) ggCGTAACGGCATGTAACGCGCACACACCGTGATTAAAGTGTTTTTCTGCGTGGAGGCACGCCTGGCGGTGCATAGCGCATAACGCTCAATCAAGGGCACTCGCCTTGTAACTATGCGCGCGTCTTGAGTCGCTGTGCATTCTGAATGa < 5:181952/149‑1 (MQ=255) gCGTAACGGCATGTAACGCGGACTCACCGTTAGTAAAGTCTTTTTCTGCGTGGAGGCACGCGTGGCGGTTCATTGCGCATAACGCTCAATCAAGGTCACTCGCCTTGTATCTATGCGCGCGTCTTGAGTCGCTGTGCATTCTGAATGa < 5:332717/148‑1 (MQ=255) gTAACGGCATGTAACGCGCACACACCGTGAGTAAAGTGTTTTTCTGCGTGGAGGCTCGCCTGGCGGTGCATAGCGCATAACGCTCAATCAAGGGCACTCGCCTTGt < 7:324988/106‑1 (MQ=255) gTAACGGCATGTAACGCGCACACACCGTGAGTAAAGTGTTTTTCTGCGTGGAGGCACGCCTGGCGGTGCATAGCGCATAACTCTCTATCAAGGGCACTCCCCTTGt > 8:324988/1‑106 (MQ=255) | AATTTGAGTCGGCCTGTCAAAGCCGGTCGTTGAATGGCAACGACCAAGCGAGACTAGTGGCCAACTCGGAACTGCACAATGGGCGACAGTATCTTTGGGAAATGTCCTACAAGAAAGGGGCAAAATCTGATTTTTTTAGCCGTTAGGCGTAACGGCATGTAACGCGCACACACCGTGAGTAAAGTGTTTTTCTGCGTGGAGGCACGCCTGGCGGTGCATAGCGCATAACGCTCAATCAAGGGCACTCGCCTTGTAACTATGCGCGCGTCTTGAGTCGCTGTGCATTCTGAATGA > NC_002947/5149035‑5149328 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |