| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 5,149,444 | C→T | 8.0% | intergenic (‑430/+18) | PP_mr51 ← / ← PP_4535 | C4 ncRNA/hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 5,149,444 | 0 | C | T | 8.0% | 254.1 / 8.1 | 87 | intergenic (‑430/+18) | PP_mr51/PP_4535 | C4 ncRNA/hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base C (43/37); new base T (5/2); total (48/39) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.52e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.00e-01 | |||||||||||
CGCGTCTTGAGTCGCTGTGCATTCTGAATGACCACGAGCAATCAGACGCATAATACATAATGTGTCCACGCCGCCCGCCATATCTTGGCTTCAACTTCAGTGTCCAAGCCAATCCTCATCCAAGTTCCAACC‑AGGAGGCTATCCC‑CCCCTGGTT‑GGAACTTCAGTTACTCGGCAATCAGACCGCGCGTTCTCCACCGAGCGCGGACGAAGTCCTCGAAGACATAGTTGCCCTGCAACGGCAGGCCATCCGCGTGATCGCAGACAATGATTTGCGGCTTGACGCCGGTTTCCTTG > NC_002947/5149298‑5149591 | cgcgTCTTGAGTCGCTGTGCATTCTGAATGACCACGAGCAATCAGACGCATAATACATAATGTGTCCACGCCGCCCGCCATATCTTGGCTTCAACTTCAGTGTCCAAGCCAATCCTCATCCAAGTTCCAACC‑AGGAGGCTATccc‑cccc < 6:157740/149‑1 (MQ=255) tCTTGAGTCGCTGTGCATTCTGAATGACCACGAGCAATCAGACGCATAATACATAATGTGTCCACGCCGCCCGCCATATCTTGGCTTCAACTTCAGTGTCCAAGCCAATCCTCATCCAAGTTCCAACC‑AGGAGGCTATCCC‑CCCCTGGt < 3:266820/149‑1 (MQ=255) ttGAGTCGCTGTGCATTCTGAATGACCACGAGCAATCAGACGCATAATACATAATGTGTCCACGCCGCCCGCCATATCTTGGCTTCAACTTCAGTGTCCAAGCCAATCCTCATCCAAGTTCCAACC‑AGGAGGCTATCCC‑CCCCTGGTT‑g > 2:268916/1‑149 (MQ=255) gAGTCGCTGTGCATTCTGAATGACCACGAGCAATCAGACGCATAATACATAATGTGTCCACGCCGCCCGCCATATCTTGGCTTCAACTTCAGTGTCCAAGCCAATCCTCATCCAAGTTCCAACC‑AGGGGGGGATAGC‑CTCCTGGtt < 8:68232/146‑1 (MQ=255) gAGTCGCTGTGCATTCTGAATGACCACGAGCAATCAGACGCATAATACATAATGTGTCCACGCCGCCCGCCATATCTTGGCTTCAACTTCAGTGTCCAAGCCAATCCTCATCCAAGTTCCAACC‑AGGAGGCTATCCC‑CCCCTGGTT‑g < 4:233340/147‑1 (MQ=255) aGTCGCTGTGCATTCTGAATGACCACGAGCAATCAGACGCATAATACATAATGTGTCCACGCCGCCCGCCATATCTTGGCTTCAACTTCAGTGTCCAAGCCAATCCTCATCCAAGTTCCAACC‑AGGAGGCTATCCC‑CCCCTGGTT‑GGa < 8:249741/148‑1 (MQ=255) gTCGCTGTGCATTCTGAATGACCACGAGCAATCAGACGCATAATACATAATGTGTCCACGCCGCCCGCCATATCTTGGCTTCAACTTCAGTGTCCAAGCCAATCCTCATCCAAGTTCCAACC‑AGGAGGCTATCCC‑CCCCTGGTT‑GGAAc > 5:26229/1‑149 (MQ=255) gTCGCTGTGCATTCTGAATGACCACGAGCAATCACACGCATAATACATAATGGGTCCACGCCGCCCGCCATATCTTGGCTTCAACTTCAGTGGCCAAGCCAATCCTCCTCCAAGTTCCAACC‑AGGAGGCTATCCC‑CCCCTGGTT‑GGAAc < 3:44270/149‑1 (MQ=255) tCGCTGTGCATTCTGAATGACCACGAGCAATCAGACGCATAATACATAATGTGTCCACGCCGCCCGCCATATCTTGGCTTCAACTTCAGTGTCCAAGCCAATCCTCATCCAAGTTCCAACA‑AGGAGGCTATCCC‑CCCCTGGTT‑GGAACt > 1:169945/1‑149 (MQ=255) gCTGTGCATTCTGAATGACCACGAGCAATCAGACGCATAATACATAATGTGTCCACGCCGCCCGCCATATCTTGGCTTCAACTTCAGTGTCCAAGCCAATCCTCATCCAAGTTCCAACC‑AGGAGGCTATCCC‑CCCCTGGTT‑GGAACTTc < 7:46208/149‑1 (MQ=255) gCTGTGCATTCTGAATGACCACGAGCAATCAGACGCATAATACATAATGTGTCCACGCCGCCCGCCATATCTTGGCTTCAACTTCAGTGTCCAAGCCAATCCTCATCCAAGTTCCAACC‑AGGAGGCTATCCC‑CCCCTGGTT‑GGAACTTc < 6:94097/149‑1 (MQ=255) cATTCTGAATGACCACGAGCAATCAGACGCATAATACATAATGTGTCCACGCCGCCCGCCATATCTTGGCTTCAACTTCAGTGTCCAAGCCAATCCTCATCCAAGTTCCAACC‑AGGAGGCTATCCC‑CCCCTGGTT‑GGAACTTCAGTTa > 5:137540/1‑148 (MQ=255) ttCTGAATGACCACGAGCAATCAGACGCATAATACATAATGTGTCCACGCCGCCCGCCATATCTTGGCTTCAACTTCAGTGTCCAAGCCAATCCTCATCCAAGTTCCAACC‑AGGAGGCTATCCC‑CCCCTGGTT‑GGAACTTCAGTTACTc < 5:99064/149‑1 (MQ=255) aaTGACCACGAGCAATCAGACGCATAATACATAATGTGTCCACGCCGCCCGCCATATCTTGGCTTCAACTTCAGTGTCCAAGCCAATCCTCATCCAAGTTCCAACC‑AGGGGGGGATAGC‑CTCCTGGtt < 6:100111/128‑1 (MQ=38) aaTGACCACGAGCAATCAGACGCATAATACATAATGTGTCCACGCCGCCCGCCATATCTTGGCTTCAACTTCAGTGTCCAAGCCAATCCTCATCCAAGTTCCAACC‑AGGGGGGGATAGC‑CTCCTGGtt > 5:100111/1‑128 (MQ=38) aTGACCACGAGCAATCAGACGCATAATACATAATGTGTCCACGCCGCCCGCCATATCTTGGCTTCAACTTCAGTGTCCAAGCCAATCCTCATCCAAGTTCCAACC‑AGGAGGCTATCCC‑CCCCTGGTT‑GGAACTTCAGTTACTCGGCAAt < 6:31517/149‑1 (MQ=255) tGACCACGAGCAATCAGACGCATAATACATAATGTGTCCACGCCGCCCGCCATATCTTGGCTTCAACTTCAGTGTCCAAGCCAATCCTCATCCAAGTTCCAACC‑AGGAGGCTATCCC‑CCCCTGGTT‑GGAACTTCAGTTACTCGGCAATc < 6:340776/149‑1 (MQ=255) gACCACGAGCAATCAGACGCATAATACATAATGTGTCCACGCCGCCCGCCATATCTTGGCTTCAACTTCAGTGTCCAAGCCAATCCTCATCCAAGTTCCAACC‑AGGAGGCTATCCC‑CCCCTGGTT‑GGAACTTCAGTTACTCGGCAATCa > 3:32729/1‑149 (MQ=255) ccACGAGCAATCAGCCGCATAATACATAATGTGTCCACGCCGCCCGCCATATCTTGGCTTCAACTTCAGTGTCCAAGCCAATCCTCATCCAAGTTCCAACC‑AGGAGGCTATCCC‑CCCCTGGTT‑CGAACTTCAGTTACTCGGCAATCAGa > 4:127709/1‑149 (MQ=255) ccACGAGCAATCAGACGCATAATACATAATGTGTCCACGCCGCCCGCCATATCTTGGCTTCAACTTCAGTGTCCAAGCCAATCCTCATCCAAGTTCCAACC‑AGGAGGCTATCCC‑CCCCTGGTT‑GGAACTTCAGTTACTCGGCAATCAGa < 2:139581/149‑1 (MQ=255) cACGAGCAATCAGACGCATAATACATAATGTGTCCACGCCGCCCGCCATATCTTGGCTTCAACTTCAGTGTCCAAGCCAATCCTCATCCAAGTTCCAACC‑AGGAGGCTATCCC‑CCCCTGGTT‑GGAACTTCAGTTACTCGGCAATCAGAc > 5:147351/1‑149 (MQ=255) tCAGACGCATAATACATAATGTGTCCACGCCGCCCGCCATATCTTGGCTTCAACTTCAGTGTCCAAGCCAATCCTCATCCAAGTTCCAACC‑AGGAGACTATCCC‑CCCCTGGTT‑GGAACTTCAGTTACTCGGCAATCAGAc > 1:197964/1‑140 (MQ=255) tCAGACGCATAATACATAATGTGTCCACGCCGCCCGCCATATCTTGGCTTCAACTTCAGTGTCCAAGCCAATCCTCATCCAAGTTCCAACC‑AGGAGACTATCCC‑CCCCTGGTT‑GGAACTTCAGTTACTCGGCAATCAGAc < 2:197964/140‑1 (MQ=255) aTAATGTGTCCACGCCGCCCGCCATATCTTGGCTTCAACTTCAGTGTCCAAGCCAATCCTCATCCAAGTTCCAACC‑AGGAGGCTATCCC‑CCCCTGGTT‑GGAACt > 3:256240/1‑104 (MQ=255) aTAATGTGTCCACGCCGCCCGCCATATCTTGGCTTCAACTTCAGTGTCCAAGCCAATCCTCATCCAAGTTCCAACC‑AGGAGGCTATCCC‑CCCCTGGTT‑GGAACt < 4:256240/104‑1 (MQ=255) aaTGTGTCCACGCCGCCCGCCATATCTTGGCTTCAACTTCAGTGTCCAAGCCAATCCTCATCCAAGTTCCAACC‑AGGAGGCTATCCC‑CCCCTGGTT‑GGACCTTCAGTTACTCGGCAATCAGACCGCGCGTTCTCCACCGAGCGCGGAc > 7:189113/1‑148 (MQ=255) aaTGTGTCCACGCCGCCCGCCATATCTTGGCTTCAACTTCAGTGTCCAAGCCAATCCTCATCCAAGTTCCAACC‑AGGAGGCTATCCC‑CCCCTGGTT‑GGAACTTCAGTTACTCGGCAATCAGACAGCGCGTTCTCCACCGCGAGCGGAc > 8:104934/1‑148 (MQ=255) tgtgTCCACGCCGCCCGCCATATCTTGGCTTCAACTTCAGTGTCCAAGCCAATCCTCATCCAAGTTCCAACC‑AGGAGGCTATCCC‑CCCCTGGTT‑GGAACTTCAGTTACTCTGCAATCAGACCGCGCGTTCTCCACCGAGCGCGGACGaa < 6:137540/149‑1 (MQ=255) tgtCCACGCCGCCCGCCATATCTTGGCTTCAACTTCAGTGTCCAAGCCAATCCTCATCCAAGTTCCAACC‑AGGAGGCTATCCC‑CCCCTGGTT‑GGAACTTCAGTTACTCGGCAATCAGACCGCGCGTTCTCCACCGAGCGCGGACGAAg < 4:32729/148‑1 (MQ=255) tCCACGCCGCCCGCCATATCTTGGCTTCAACTTCAGTGTCCAAGCCAATCCTCATCCAAGTTCCAACC‑AGGAGGCTATCCC‑CCCCTGGTT‑GGAACTTCAGTTACTCGGCAATCAGACCGCGCGTTCTCCACCGAGCGCGGACGAAGTcc > 3:318385/1‑149 (MQ=255) tCCACGCCGCCCGCCATATCTTGGCTTCAACTTCAGTGTCCAAGCCAATCCTCATCCAAGTTCCAACC‑AGGAGGCTATCCC‑CCCCTGGTT‑GGAACTTCAGTTACTCGGCAATCAGACCGCGCGTTCTCCACCGAGCGCGGACGAAGTcc < 3:127709/149‑1 (MQ=255) ccACGCCGCCCGCCATATCTTGGCTTCAACTTCAGTGTCCAAGCCAATCCTCATCCAAGTTCCAACC‑AGGAGGCTATCCC‑CCCCTGGTT‑GGAACTTCAGTTACTCGGCAATCAGACCGCGCGTTCTCCACCGAGCGCGGACGAAGTCCt > 5:63847/1‑149 (MQ=255) cACGCCGCCCGCCATATCTTGGCTTCAACTTCAGTGTCCAAGCCAATCCTCATCCAAGTTCCAACC‑AGGAGGCTATCCC‑CCCCTGGTT‑GGAACTTCAGTTACTCGGCAATCAGACCGCGCGTTCTCCACCGAGCGCGGACGAAGTCCTc > 3:236411/1‑149 (MQ=255) cgcccgccATATCTTGGCTTCAACTTCAGTGTCCAAGCCAATCCTCATCCAAGTTCCAACC‑AGGAGGCTATCCC‑CCCCTGGTT‑GGAACTTCAGTTACTCGGCAATCAGACCGCGCGTTCTCCACCGAGCGCGGACGAAGTCCTCGAAGa > 4:142877/1‑149 (MQ=255) ccgccATATCTTGGCTTCAACTTCAGTGTCCAAGCCAATCCTCATCCAAGTTCCAACC‑AGGAGGCTATCCC‑CCCCTGGTT‑GGAACTTCAGTTACTCgg > 3:90220/1‑98 (MQ=255) ccgccATATCTTGGCTTCAACTTCAGTGTCCAAGCCAATCCTCATCCAAGTTCCAACC‑AGGAGGCTATCCC‑CCCCTGGTT‑GGAACTTCAGTTACTCgg < 4:90220/98‑1 (MQ=255) ccgccATATCTTGGCTTCAACTTCAGTGTCCAAGCCAATCCTCATCCAAGTTCCAACC‑AGGAGGCTATCCC‑CCCCTGGTT‑GGAACTTCAGTTACTCGGCAATCAGACCGCGCGTTCTCCACCGAGCGCGGACGAAGTCCTc < 3:85651/141‑1 (MQ=255) ccgccATATCTTGGCTTCAACTTCAGTGTCCAAGCCAATCCTCATCCAAGTTCCAACC‑AGGAGGCTATCCC‑CCCCTGGTT‑GGAACTTCAGTTACTCGGCAATCAGACCGCGCGTTCTCCACCGAGCGCGGACGAAGTCCTc > 4:85651/1‑141 (MQ=255) ccgccATATCTTGGCTTCAACTTCAGTGTCCAAGCCAATCCTCATCCAAGTTCCAACC‑AGGAGGCTATCCC‑CCCCTGGTT‑GGAACTTCAGTTACTCGGCAATCAGACCGCGCGTTCTCCACCGAGCGCGGACGAAGTCCTCGAAGACa > 7:95243/1‑148 (MQ=255) ccgccATATCTTGGCTTCAACTTCAGTGTCCAAGCCAATCCTCATCCAAGTTCCAACC‑AGGAGGCTATCCC‑CCCCTGGTT‑GGAACTTCAGTTACTCGGCAATCAGACCGCGCGTTCTCCACCGAGCGCGGACGAAGTCCTCGAAGACAt < 2:150896/149‑1 (MQ=255) cgccATATCTTGGCTTCAACTTCAGTGTCCAAGCCAATCCTCATCCAAGTTCCAACC‑AGGAGGCTATCCC‑CCCCTGGTT‑GGAACTTCAGTTACTCGGCAATCAGACCGCGCGTTCTCCACCGAGCGCGGACGAAGTCCTCGAAGACATa < 6:147351/149‑1 (MQ=255) ccATATCTTGGCTTCAACTTCAGTGTCCAAGCCAATCCTCATCCAAGTTCCAACC‑AGGAGGCTATCCC‑CCCCTGGTT‑GGAACTTCAGTTACTCGGCAATCAGACCGCGCGTTCTCCACCGAGCGCGGACGAAGTCCTCGAAGACATAGt > 1:117444/1‑149 (MQ=255) tCTTGGCTTCAACTTCAGTGTCCAAGCCAATCCTCATCCAAGTTCCAACC‑AGGAGGCTATCCC‑CCCCTGGTT‑GGAACTTCAGTTACTCGGCAATCAGACCGCGCGTTCTCCACCGAGCGCGGACGAAGTCCTCGAAGACATAGTTGcc < 3:60979/148‑1 (MQ=255) ttGGCTTCAACTTCAGTGTCCAAGCCAATCCTCTTCCAAGTTCCAACC‑AGGAGGCTATCCC‑CCCCTGGTT‑GGAACTTCAGTTACTCGGCAATCAGACCGCGCGTTCTCCACCGAGCGCGGACGAAGTCCTCGAAGACATAGTTGCCCTg > 3:35128/1‑149 (MQ=255) tGGCTTCAACTTCAGTGTCCAAGCCAATCCTCATCCAAGTTCCAACC‑AGGAGGCTATCCC‑CCCCTGGTT‑GGAACTTCAGTTACTCGGCAATCAGACCGCGCGTTCTCCACCGAGCGCGGACGAAGTCCTCGAAGACATAGTTGCCCTg > 5:112076/1‑148 (MQ=255) ggCTTCAACTTCAGTGTCCAAGCCAATCCTCATCCAAGTTCCAACC‑AGGAGGCTATCCC‑CCCCTGGTT‑GGAACTTCAGTTACTCGGCAATCAGACCGCGCGTTCTCCACCGAGCGCGGACGAAGTCCTCGAAGACATAGTTGCCCt < 6:132763/146‑1 (MQ=255) ttCAACTTCAGTGTCCAAGCCAATCCTCATCCAAGTTCCAACCGAGGAGCCTAACCC‑CCCCGGGTT‑GGAACTTCAGTTAAACGGAAATCAAACCCCGCGTTGTCCACCGAGCGCGGACGAAGACGACCAAGACATAGTTGCCATGCAAc > 1:240810/1‑149 (MQ=255) ttCAACTTCAGTGTCCAAGCCAATCCTCATCCAAGTTCCAACC‑AGGAGGCTATCCC‑CCCCTGGTT‑GGAACTTCAGTTACTCGGCAATCAGACCGCGCGTTCTCCACCGAGCGCGGACGAAGTCCTCGAAGACATAGTTGCCCTGCAACg > 5:99313/1‑149 (MQ=255) aaCTTCAGTGTCCAAGCCAATCCTCATCCAAGTTCCAACC‑AGGAGGCTATCCCGCCCCTGGTT‑GGAACTTCAGTTACTCGGCAATCAGACCGCGCGTTCTCCACCGAGCGCGGACGAAGTCCTCGAAGACATAGTTGCCCTGCAACgg > 1:263467/1‑148 (MQ=255) aaCTTCAGTGTCCAAGCCAATCCTCATCCAAGTTCCAACC‑AGGAGGCTATCCC‑CCCCTGGTT‑GGAACTTCAGTTACTCGGCAATCAGACCGCGCGTTCTCCACCGAGCGCGGACGAAGTCCTCGAAGACATAGTTGCCCTGCAACgg > 3:15989/1‑147 (MQ=255) aaCTTCAGTGTCCAAGCCAATCCTCATCCAAGTTCCAACC‑AGGAGGCTATCCC‑CCCCTGGTT‑GGAACTTCAGTTACTCGGCAATCAGACCGCGCGTTCTCCACCGAGCGCGGACGAAGTCCTCGAAGACATAGTTGCCCTGCAACGGc < 6:26229/148‑1 (MQ=255) cTTCAGTGTCCAAGCCAATCCTCATCCAAGTTCCAACC‑AGGAGGCTATCCC‑CCCCTGGTT‑GGAACTTCAGTTACTCGGCAATCAGACCGCGCGTTCTCCACCGAGCGCGGACGAAGTCCTCGAAGACATAGTTGCCCTGCAACGGCAgg < 2:117444/149‑1 (MQ=255) aGTGTCCAAGCCAATCCTCATCCAAGTTCCAACC‑AGGAGGCTATCCC‑CCCCTGGTT‑GGAACTTCAGTTACTCGGCAATCAGACCGCGCGTTCTCCACCGAGCGCGGACGAAGTCCTCGAAGACATAGTTGCCCTGCAACGGCAGGCCAt < 4:318385/149‑1 (MQ=255) gtCCAAGCCAATCCTCATCCAAGTTCCAACC‑AGGAGGCTATCCC‑CCCCTGGTT‑GGAACTTCAGTTACTCGGCAATCAGACCGCGCGTTCTCCACCGAGCGCGGACGAAGTCCTCGAAGACATAGTTGCCCTGCAACGGCAGGCCATcc < 4:236411/148‑1 (MQ=255) cAAGCCAATCCTCATCCAAGTTCCAACC‑AGGAGGCTATCCC‑CCCCTGGTT‑GGAACTTCAGTTACTCGGCAATCAGACCGCGCGTTCTCCACCGAGCGCGGACGAAGTCCTCGAAGACATAGTTGCCCTGCAACGGCAGGCCATCCGCGt > 6:157425/1‑149 (MQ=255) cAAGCCAATCCTCATCCAAGTTCCAACC‑AGGAGGCTATCCC‑CCCCTGGTT‑GGAACTTCAGTTACTCGGCAATCAGACCGCGCGTTCTCCACCGAGCGCGGACGAAGTCCTCGAAGACATAGTTGCCCTGCAACGGCAGGCCATCCGCGt > 8:260944/1‑149 (MQ=255) cAAGCCAATCCTCATCCAAGTTCCAACC‑AGGAGGCTATCCC‑CCCCTGGTT‑GGAACTTCAGTTACTCGGCAATCAGACCGCGCGTTCTCCACCGAGCGCGGACGAAGTCCTCGAAGACATAGTTGCCCTGCAACGGCAGGCCATCCGCGt > 1:409/1‑149 (MQ=255) aaGCCAATCCTCATCCAAGTTCCAACC‑AGGAGGCTATCCC‑CCCCTGGTT‑GGAACTTCAGTTACTCGGCAATCAGACCGCGCGTTCTCCACCGAGCGCGGACGAAGTCCTCGAAGACATAGTTGCCCTGCAACGGCAGGCCATCCGCGt > 4:41470/1‑148 (MQ=255) cAATCCTCTTCCAAGTTCCAACC‑AGGAGGCTATCCC‑CCCCTGGTT‑GGAACTTCAGTTACTCGGCAATCAGACCGCGCGTTCTCCACCGAGCGCGGACGAAGTCCTCGAAGACATAGTTGCCCTGCAACGGCAGGCCATCCGCGTGATCg < 4:35128/149‑1 (MQ=255) cTCATCCAAGTTCCAACC‑AGGAGGCTATCCC‑CCCCTGGTT‑GGAACTTCAGTTACTCGGCAATCAGACCGCGCGTTCTCCACCGAGCGCGGACGAAGTCCTCGAAGACATAGTTGCCCTGCAACGGCAGGCCATCCGCGTGATCGCAGa < 2:263467/148‑1 (MQ=255) cTCATCCAAGTTCCAACC‑AGGAGGCTATCCC‑CCCCTGGTT‑GGAACTTCAGTTACTCGGCAATCAGACCGCGCGTTCTCCACCGAGCGCGGACGAAGTCCTCGAAGACATAGTTGCCCTGCAACGGCAGGCCATCCGCGTGATCGCAGa < 3:41470/148‑1 (MQ=255) cTCATCCAAGTTCCAACC‑AGGAGGCTATCCC‑CCCCTGGTT‑GGAACTTCAGTTACTCGGCAATCAGACCGCGCGTTCTCCACCGAGCGCGGACGAAGTCCTCGAAGACATAGTTGCCCTGCAACGGCAGGCCATCCGCGTGATCGCAGAc < 6:112076/149‑1 (MQ=255) cATCCAAGTTCCAACC‑AGGAGGCTATCCC‑CCCCTGGTT‑GGAACTTCAGTTACTCGGCAATCAGACCGCGCGTTCTCCACCGAGCGCGGACGAAGTCCTCGAAGACATAGTTGCCCTGCAACGGCAGGCCATCCGCGTGATCGCAGACaa > 5:321736/1‑149 (MQ=255) ccAAGTTCCAACC‑AGGAGGCTATCCC‑CCCCTGGTT‑GGAACTTCAGTTACTCGGCAATCAGACCGCGCGTTCTCCACCGAGCGCGGACGAAGTCCTCGAAGACATAGTTGCCCTGCAACGGCAGGCCATCCGCGTGATCGCAGACAATGa > 6:260047/1‑149 (MQ=255) aaGTTCCAACT‑AGGAGGCTATCCC‑CCCCTGGTT‑GGAACTTCAGTTACTCGGCAATCAGACCGCGCGTTCTCCACCGAGCGCGGACGAAGTCCTCGAAGACATAGTTGccc < 5:105138/110‑1 (MQ=255) aaGTTCCAACT‑AGGAGGCTATCCC‑CCCCTGGTT‑GGAACTTCAGTTACTCGGCAATCAGACCGCGCGTTCTCCACCGAGCGCGGACGAAGTCCTCGAAGACATAGTTGccc > 6:105138/1‑110 (MQ=255) aaGTTCCAACC‑AGGAGGCTATCCC‑CCCCTGGTTGGGAACTTCAGTTACTCGGCAATCAGACCGCGCGTTCTCCACCGAGCGCGGACGAAGTCCTCGAAGACATAGTTGCCCTGCAACGGCAGGCCATCCGCGTGATCGCAGACAATGAt > 1:52008/1‑149 (MQ=255) aaGTTCCAACC‑AGGAGGCTATCCC‑CCCCTGGTT‑GGAACTTCAGTTACTCGGCAATCAGACCGCGCGTTCTCCACCGAGCGCGGACGAAGTCCTCGAAGACATAGTTGCCCTGCAACGGCAGGCCATCCGCGTGATCGCAGACAATGAtt > 8:174930/1‑149 (MQ=255) aaGTTCCAACC‑AGGAGGCTATCCC‑CCCCTGGTT‑GGAACTTCAGTTACTCGGCAATCAGACCGCGCGTTCTCCACCGAGCGCGGACGAAGTCCTCGAAGACATAGTTGCCCTGCAACGGCAGGCCATCCGCGTGATCGCAGACAATGAtt < 2:52008/149‑1 (MQ=255) aaGTTCCAACC‑AGGAGGCTATCCC‑CCCCTGGTT‑GGAACTTCAGTTACTCGGCAATCAGACCGCGCGTTCTCCACCGAGCGCGGACGAAGTCCTCGAAGACATAGTTGCCCTGCAACGGCAGGCCATCCGCGTGATCGCAGACAATGAtt < 5:260047/149‑1 (MQ=255) gTTCCAACC‑AGGAGGCTATCCC‑CCCCTGGTT‑GGAACTTCAGTTACTCGGCAATCAGACCGCGCGTTCTCCACCGAGCGCGGACGAAGTCCTCGAAGACATAGTTGCCCTGCAACGGCAGGCCATCCGCGTGATCGCAGACAATGATTTg < 7:260944/149‑1 (MQ=255) ttCCAACC‑AGGAGGCTATCCC‑CCCCTGGTT‑GGAACTTCAGTTACTCGGCAATCAGACCGCGCGTTCTCCACCGAGCGCGGACGAAGTCCTCGAAGACATAGTTGCCCTGCAACGGCAGGCCATCCGCGTGATCGCAGACAATGATTTGc > 3:241063/1‑149 (MQ=255) ttCCAACC‑AGGAGGCTATCCC‑CCCCTGGTT‑GGAACTTCAGTTACTCGGCAATCAGACCGCGCGTTCTCCACCGAGCGCGGACGAAGTCCTCGAAGACATAGTTGCCCTGCAACGGCAGGCCATCCGCGTGATCGCAGACAATGATTTGc > 2:225537/1‑149 (MQ=255) ccAACC‑AGGGGGGGATAGC‑CTCCTGGTT‑GGAACTTCAGTTACTCGGCAATCAGACCGCGCGTTCTCCACCGAGCGCGGACGAAGTCCTCGAAGACATAGTTGCCCTGCAACGGCAGGCCATCCGCGTGATCGCAGACAATGATTTGCgg > 5:290200/1‑149 (MQ=39) ccAACC‑AGGAGGCTATCCC‑CCCCTGGTT‑GGAACTTCAGTTACTCGGCAATCAGACCGCGCGTTCTCCACCGAGCGCGGACGAAGTACTCGAAGACATAGTTGCCCTGAAACGGCAGGCCATCCGCGTGATCGCACACAATGATTTGCgg > 6:122606/1‑149 (MQ=255) cAACC‑AGGAGGCTATCCC‑CCCCTGGTT‑GGAACTTCAGTTACTCGGCAATCAGACCGCGCGTTCTCCACCGAGCGCGGACGAAGTCCTCGAAGACATAGTTGCCCTGCAACGGCAGGCCATCCGCGTGATCGCAGACAATGATTTGCGGc > 6:222024/1‑149 (MQ=255) cAACC‑AGGAGGCTATCCC‑CCCCTGGTT‑GGAACTTCAGTTACTCGGCAATCAGACCGCGCGTTCTCCACCGAGCGCGGACGAAGTCCTCGAAGACATAGTTGCCCTGCAACGGCAGGCCATCCGCGTGATCGCAGACAATGATTTGCGGc < 4:15989/149‑1 (MQ=255) cAACC‑AGGAGGCTATCCC‑CCCCTGGTT‑GGAACTTCAGTTACTCGGCAATCAGACCGCGCGTTCTCCACCGAGCGCGGACGAAGTCCTCGAAGACATAGTTGCCCTGCAACGGCAGGCCATCCGCGTGATCGCAGACAATGATTTGCGGc > 1:65168/1‑149 (MQ=255) cAACC‑AGGAGGCTATCCC‑CCCCTGGTT‑GGAACTTCAGTTACTCGGCAATCAGACCGCGCGTTCTCCACCGAGCGAGGACGAAGTCCTCGAAGACATAGTTGCCCTGCAACGGCAGGCCATCCGCGTGATCGCAGACAATGATTTGCGGc > 6:35614/1‑149 (MQ=255) aaCC‑AGGGGGGGATAGC‑CTCCTGGTT‑GGAACTTCAGTTACTCGGCAATCAGACCGCGCGTTCTCCACCGAGCGCGGACGAAGTCCTCGAAGCCATAGTTGCCCTGCAACGGCAGGCCATCCGCGTGACCGCAGACAATGAGTTGCGGcg > 8:266581/1‑148 (MQ=255) aaCC‑AGGGGGGGATAGC‑CTCCTGGTT‑GGAACTTCAGTTACTCGGCAATCAGACCGCGCGTTCTCCACCGAGCGCGGACGAAGTCCTCGAAGACATAGTTGCCCTGCAACGGCAGGCCATCCGCGTGATCGCAGACAATGATTTGCGGCt > 3:98788/1‑149 (MQ=255) aaCC‑AGGGGGGGATAGC‑CTCCTGGTT‑GGAACTTCAGTTACTCGGCAATCAGACCGCGCGTTCTCCACCGAGCGCGGACGAAGTCCTCGAAGACATAGTTGCCCTGCAACGGCAGGCCATCCGCGTGATCGCAGACAATGATTTGCGGCt > 8:178619/1‑149 (MQ=255) aCC‑AGGAGGCTATCCC‑CCCCTGGTT‑GGAACTTCAGTTACTCGGCAATCAGACCGCGCGTTCTCCACCGAGCGCGGACGAAGTCCTCGAAGACATAGTTGCCCTGCAACGGCAGGCCATCCGCGTGATCGCAGACAATGATTTGCGGCtt > 7:286894/1‑149 (MQ=255) aCC‑AGGAGGCTATCCC‑CCCCTGGTT‑GGAACTTCAGTTACTCGGCAATCAGACCGCGCGTTCTCCACCGAGCGCGGACGAAGTCCTCGAAGACATAGTTGCCCTGCAACGGCAGGCCATCCGCGTGATCGCAGACAATGATTTGCGGCtt < 1:268916/149‑1 (MQ=255) aggCTATCCC‑CCCCTGGTT‑GGAACTTCAGTTACTCGGCAATCAGACCGCGCGTTCTCCACCGAGCGCGGACGAAGTCCTCGAAGACATAGTTGCCCTGCAACGGCAGGCCATCCGCGTGATCGCAGACAATGATTTGCGGCTTGACGcc < 4:241063/149‑1 (MQ=255) gCTATCCC‑CCCCTGGTT‑GGAACTTCAGTTACTCGGCAATCAGACCGCGCGTTCTCCACCGAGCGCGGACGAAGTCCTCGAAGACATAGTTGCCCTGCAACGGCAGGCCATCCGCGTGATCGCAGACAATGATTTGCGGCTTGACGCCgg > 3:217042/1‑149 (MQ=255) aTCCC‑CCCCTGGTT‑GGAACTTCAGTTACTCGGCAATCAGACCGCGCGTTCTCCACCGAGCGCGGACGAAGTCCTCGAAGACATAGTTGCCCTGCAACGGCAGGCCATCCGCGTGATCGCAGACAATGATTTGCGGCTTGACGCCGGttt > 3:35071/1‑149 (MQ=255) tCCC‑CCCCTGGTT‑GGAACTTCAGTTACTCGGCAATCAGACCGCGCGTTCTCCACCGAGCGCGGACGAAGTCCTCGAAGACATAGTTGCCCTGCAACGGCAGGCCATCCGCGTGATCGCAGACAATGATTTGCGGCTTGACGCCGGTTTc < 2:169945/149‑1 (MQ=255) c‑ccccTGGTT‑GGAACTTCAGTTACTCGGCAATCAGACCGCGCGTTCTCCACCGAGCGCGGACGAAGTCCTCGAAGACATAGTTGCCCTGCAACGGCAGGCCATCCGCGTGATCGCAGACAATGATTTGCGGCTTGACGCCGGTTTCCtt > 2:213108/1‑149 (MQ=255) ccccTGGTT‑GGAACTTCAGTTACTCGGCAATCAGACCGCGCGTTCTCCACCGAGCGCGGACGAAGTCCTCGAAGACATAGTTGCCCTGCAACGGCAGGCCATCCGCGTGATCGCAGACAATGATTTGCGGCTTGACGCCGGTTTCCTTg < 8:32267/149‑1 (MQ=255) | CGCGTCTTGAGTCGCTGTGCATTCTGAATGACCACGAGCAATCAGACGCATAATACATAATGTGTCCACGCCGCCCGCCATATCTTGGCTTCAACTTCAGTGTCCAAGCCAATCCTCATCCAAGTTCCAACC‑AGGAGGCTATCCC‑CCCCTGGTT‑GGAACTTCAGTTACTCGGCAATCAGACCGCGCGTTCTCCACCGAGCGCGGACGAAGTCCTCGAAGACATAGTTGCCCTGCAACGGCAGGCCATCCGCGTGATCGCAGACAATGATTTGCGGCTTGACGCCGGTTTCCTTG > NC_002947/5149298‑5149591 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |