| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 5,532,228 | C→A | 6.7% | K15N (AAG→AAT) ‡ | braE ← | high‑affinity branched‑chain amino acid ABC transporter permease BraE |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 5,532,228 | 0 | C | A | 6.7% | 212.4 / 3.8 | 68 | K15N (AAG→AAT) ‡ | braE | high‑affinity branched‑chain amino acid ABC transporter permease BraE |
| Reads supporting (aligned to +/- strand): ref base C (26/37); new base A (3/2); total (29/39) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.44e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.98e-01 | |||||||||||
TCACACCGCCGACCAGCCAGGCCACGCGGCGCGGCTCGGCATTGAAGGTGTAGCCGTCGAGCACCACACCAACGACCGGACCAAACACGATAAGTGCC‑‑AGCAGGCCA‑GCGACAATGGTCTCCAGCAGGCTGCGTTTAAGGTCGAAACCCTTGGTTTCGCTAATAGAGGCAGTTTTGGCAACGGACATGTTCACACCTTAGCCACGAGCGGGCGACCCAGCAGGCCTTGTGGGCGGAAGATAAGGATCATCACCAGCAGCGAGAAGCTGAACACATCCTTGTAGTCGGAGTTGA > NC_002947/5532080‑5532372 | tCACACCGCCGACCAGCCAGGCCACGCGGCGCGGCTCGGCATTGAAGGTGTAGCCGTCGAGCACCACACCAACGACCGGACCAAACACGATAAGTGCC‑‑AGCAGGCCA‑GCGACAATGGTCTCCAGCAGGCTGCGTTTAAGGTCGAAAccc > 5:175973/1‑149 (MQ=255)tCACACCGCCGACCAGCCAGGCCACGCGGCGCGGCTCGGCATTGAAGGTGTAGCCGTCGAGCACCACACCAACGACCGGACCAAACACGATAAGTGCC‑‑AGCAGGCCA‑GCGACAATGGTCTCCAGCAGGCTGCGTTTAAGGTCGAAAccc > 1:31815/1‑149 (MQ=255)tCACACCGCCGACCAGCCAGGCCACGCGGCGCGGCTCGGCATTGAAGGTGTAGCCGTCGAGCACCACACCAACGACCGGACCAAACACGATAAGTGCC‑‑AGCAGGCCA‑GCGACAATGGTCTCCACCAGGCTGCGTTTAAGGTCGAAAccc > 6:350086/1‑149 (MQ=255) acacCTCCGACCAGCCAGGCCACGCGGCGCGGCTCGGCATTGAAGGTGTAGCCGTCGAGCACCACACCAACGACCGGACCAAACACGATAAGTGCC‑‑AGCAGGCCA‑GCGACAATGGTCTCCAGCAGGCTGCGTTTAAGGTCGAAACCCtt < 1:307992/149‑1 (MQ=255) acCGCCGACCAGCCAGGCCACGCGGCGCGGCTCGGCATTGAAGGTGTAGCCGTCGAGCACCACACCAACGACCGGACCAAACACGATAAGTGCC‑‑AGCAGGCCA‑GCGACAATGGTCTCCAGCAGGCTGCGTTTAAGGTCGAAACCCTTgg < 1:153426/149‑1 (MQ=255) aCCAGCCAGGCCACGCGGCGCGGCTCGGCATTGAAGGTGTAGCCGTCGAGCACCACACCAACGACCGGACCAAACACGATAAGTGCC‑‑AGCAGGCCA‑GCGACAATGGTCTCCAGCAGGCTGCGTTTAAGGTCGAAACCCTTGGTTTCGc > 3:61930/1‑148 (MQ=255) aCCAGCCAGGCCACGCGGCGCGGCTCGGCATTGAAGGTGTAGCCGTCGAGCACCACACCAACGACCGGACCAAACACGATAAGTGCC‑‑AGCAGGCCA‑GCGACAATGGTCTCCAGCAGGCTGCGTTTAAGGTCGAAACCCTTGGTTTCGCt < 5:286707/149‑1 (MQ=255) aCCAGCCAGGCCACGCGGCGCGGCTCGGCATTGAAGGTGTAGCCGTCGAGCACCACACCAACGACCGGACCAAACACGATAAGTGCC‑‑AGCAGGCCA‑GCGACAATGGTCTCCAGCAGGCTGCGTTTAAGGTCGAAACCAAGGGTTTCgac < 4:279590/149‑3 (MQ=255) gccagGCCACGCGGCGCGGCTCGGCAGTGAAGGTGTAGCCGTCGAGCACCACACCAACGCCCGGACCCACCACGATAAGTGCC‑‑AGCAGGCCA‑GCGCCAATGGTCTCCAGCAGGCTGCGTTTAAGGGCGAAACCCTTGGTTTCGCGaa > 3:211786/1‑147 (MQ=255) agGCCACGCGGCGCGGCTCGGCATTGAAGGTGTAGCCGTCGAGCACCACACCAACGACCGGACCAAACACGATAAGTGCC‑‑AGCAGGCCA‑GCGACAATGGTCTCCAGCAGGCTGCGTTTAAGGTCGAAACCCTTGGTTTCg > 3:51495/1‑140 (MQ=255) agGCCACGCGGCGCGGCTCGGCATTGAAGGTGTAGCCGTCGAGCACCACACCAACGACCGGACCAAACACGATAAGTGCC‑‑AGCAGGCCA‑GCGACAATGGTCTCCAGCAGGCTGCGTTTAAGGTCGAAACCCTTGGTTTCg < 4:51495/140‑1 (MQ=255) ggCCACGCGGCGCGGCTCGGCATTGAAGGTGTAGCCGTCGAGCACCACACCAACGACCGGACCAAACACGATAAGTGCC‑‑AGCAGGCCA‑GCGACAATGGTCTCCAGCAGGCTGCGTTTAAGGTCGAAACCCTTGGTTTCGCTAATAGAgg < 5:350086/149‑1 (MQ=255) aCGCGGCGCGGCTCGGCATTGAAGGTGTAGCCGTCGAGCACCACACCAACGACCGGACCAAACACGATAAGTGCC‑‑AGCAGGCCA‑GCGACAATGGTCTCCAGCAGGCTGCGTTTAAGGTCGAAACCCTTGGTTTCGCTAATAGAGGCAGt > 5:250953/1‑149 (MQ=255) gcggcgcggcTCGGCATTGAAGGTGTAGCCGTCGAGCACCACACCAACGACCGGACCAAACACGATAAGTGCC‑‑AGCAGGCCA‑GCGCCAATGGTCTCCAGCAGGCTGCGTTTAAGGTCGAAACCCTTGGTTTCGCTAATAGAGGCAGttt > 3:219378/1‑149 (MQ=255) gcggcgcggcTCGGCATTGAAGGTGTAGCCGTCGAGCACCACACCAACGACCGGACCAAACACGAAAAGTGCC‑‑AGCAGGCCA‑GCGACAATGGTCTCCAGCAGGCTGCGATTAAGGTCGAAACCCTTGGTTTCGCTAATAGAGGCAGttt > 4:21747/1‑149 (MQ=255) cggcgcggcTCGGCATTGAAGGTGTAGCCGTCGAGCACCACACCAACGACCGGACCAAACACGATAAGTGCC‑‑AGCAGGCCA‑GCGACAATTGTCTCCAGCAGGCTGCGTTTAAGGTCGAAACCCTTGGTTTCGCTAATAGAGGCAGtttt < 2:152702/149‑1 (MQ=255) cggcgcggcTCGGCATTGAAGGTGTAGCCGTCGAGCACCACACCAACGACCGGACCAAACACGATAAGTGCC‑‑AGCAGGCCA‑GCGACAATGGTCTCCAGCAGGCTGCGTTTAAGGTCGAAACCCTTGGTTTCGCTAATAGAGGCAGtttt < 6:250953/149‑1 (MQ=255) gcgcggcTCGGCATTGAAGGTGTAGCCGTCGAGCACCACACCAACGACCGGACCAAACACGATAAGTGCC‑‑AGCAGGCCA‑GCGACAATGGTCTCCAGCAGGCTGCGTTTAAGGTCGAAACCCTTGGTTTCGCTAATAGAGGCAGTTTTgg < 6:127018/149‑1 (MQ=255) ggcgggTCGGCATTGAATGGGTATCCGTCGAGCACCACACCAACGACCGGACCAAACACGATAAGTGCC‑‑AGCATGCCATGCGTCAATGGTCTCCAGCAGGCTGCGTTTAAGGTCGAAACCCTTGGTTTCGCTAATAGAGGCAGTTTTgg < 1:276350/148‑1 (MQ=255) ggcTCGGCATTGAAGGTGTAGCCGTCGAGCACCACACCAACGACCGGACCAAACACGATAAGTGCC‑‑AGCAGGCCA‑GCGACAATGGTCTCCAGCAGGCTGCGTTTAAGGTCGAAACCCTTGGTTTCGCTAATAGAGGCAGTTTTGGCAAc < 4:43915/149‑1 (MQ=255) tCGGCATTGAAGGTGTAGCCGTCGAGCACCACACCAACGACCGGACCAAACACGATAAGTGCCGAAACAGGACA‑GCGACAATGGTCACCAGCAGGCTGCGTTTAATGTCAAAACCATTGGTTTCTCTAATAGAGGCAGTTTTGGCAACg > 1:275986/1‑149 (MQ=255) tCGGCATTGAAGGTGTAGCCGTCGAGCACCACACCAACGACCGGACCAAACACGATAAGTGCC‑‑AGCAGGCCA‑GCGACAATGGTCTCCAGCAGGCTGCGTTTAAGGTCGAAACCCTTGGTTTCGCTAATa < 8:60664/129‑1 (MQ=255) tCGGCATTGAAGGTGTAGCCGTCGAGCACCACACCAACGACCGGACCAAACACGATAAGTGCC‑‑AGCAGGCCA‑GCGACAATGGTCTCCAGCAGGCTGCGTTTAAGGTCGAAACCCTTGGTTTCGCTAATa > 7:60664/1‑129 (MQ=255) gCATTGAAGGTGTAGCCGTCGAGCACCACACCAACGACCGGACCAAACACGATAAGTGCC‑‑AGCAGGCCA‑GCGACAATGGTCTCCAGCAGGCTGCGTTTAAGGTCGAAACCCTTGGTTTCGCTAATAGAGGCAGTTTTGGCAACGGACAt > 2:310895/1‑149 (MQ=255) aTTGAAGGTGTAGCCGTCGAGCACCACACCAACGACCGGACCAAACACGATAAGTGCC‑‑AGCAGGCCA‑GCGACAATGGTCTCCAGCAGGCTGCGTTTAAGGTCGAAACCCTTGGTTTCGCTAATAGAGGCAGttt < 6:96111/134‑1 (MQ=255) aTTGAAGGTGTAGCCGTCGAGCACCACACCAACGACCGGACCAAACACGATAAGTGCC‑‑AGCAGGCCA‑GCGACAATGGTCTCCAGCAGGCTGCGTTTAAGGTCGAAACCCTTGGTTTCGCTAATAGAGGCAGttt > 5:96111/1‑134 (MQ=255) gAAGGTGTAGCCGTCGAGCACCACACCAACGACCGGACCAAACACGATAAGTGCC‑‑AGCAGGCCA‑GCGACAATGGTCTCCAGCAGGCTGCGTTTAAGGTCGAAACCCTTGGTTTCGCTAATAGAGGCAGTTTTGGCAACGGACATGTTca > 7:49113/1‑149 (MQ=255) aaGGTGTAGCCGTCGAGCACCACACCAACGACCGGACCAAACACGATAAGTGCC‑‑AGCAGGCCA‑GCGACAATGGTCTCCAGCAGGCTGCGTTTAAGGTCGAAACCCtt < 4:110653/107‑1 (MQ=255) aaGGTGTAGCCGTCGAGCACCACACCAACGACCGGACCAAACACGATAAGTGCC‑‑AGCAGGCCA‑GCGACAATGGTCTCCAGCAGGCTGCGTTTAAGGTCGAAACCCtt > 3:110653/1‑107 (MQ=255) aaGGTGTAGCCGTCGAGCACCACACCAACGACCGGACCAAACACGATAAGTGCC‑‑AGCAGGCCA‑GCGACAATGGTCTCCAGCAGGCTGCGTTTAAGGTCGAAACCCTTGGTTTGGCTAATAGAGGCAGTTTTGGCAACGGACATGTTca > 2:292901/1‑148 (MQ=255) aaGGTGTAGCCGTCGAGCACCACACCAACGACCGGACCAAACACGATAAGTGCC‑‑AGCAGGCCA‑GCGACAATGGTCTCCAGCAGGCTGCGTTTAAGGTCGAAACCCTTGGTTTCGCTAATAGAGGCAGTTTTGGCAACGGACATGTTcac < 6:222618/149‑1 (MQ=255) aaGGTGTAGCCGTCGAGCACCACACCAACGACCGGACCAAACACGATAAGTGCC‑‑AGCAGGCCA‑GCGACAATGGTCTCCAGCAGGCTGCGTTTAAGGTCGAAACCCTTGGTTTCGCTAATAGAGGCAGTTTTGGCAACGGACATGTTca > 5:222618/1‑148 (MQ=255) aGGTGTAGCCGTCGAGCACCACACCAACGACCGGACCAAACACGATAAGTGCC‑‑AGCAGGCCA‑GCGACAATGGTCTCCAGCAGGCTGCGTTTAAGGTCGAAACCCTTGGTTTCGCTAATAGAGGCAGTTTTGGCAACGGACATGTTcaca < 3:293156/149‑1 (MQ=255) tAGCCGTCGAGCACCACACCAACGACCGGACCAAACACGATAAGTGCC‑‑AGCAGGCCA‑GCGACAATGGTCTCCAGCAGGCTGCGTTTAAGGTCGAAACCCTTGGTTTCGCTAATAGAGGCAGTTTTGGCAACGGACATGTTCACACCTTa < 4:61930/149‑1 (MQ=255) gCCGTCGAGCACCACACCAACGACCGGACCAAACACGATAAGTGCC‑‑AGCAGGCCA‑GCGACAATGGTCTCCAGCAGGCTGCGTTTAAGGTCGAAACCCTTGGTTTCGCTAATAGAGGCAGTTTTGGCAACGGACATGTTCACATCTTAGc < 2:275986/149‑1 (MQ=255) gCCGTCGAGCACCACACCAACGACCGGACCAAACACGATAAGTGCC‑‑AGCAGGCCA‑GCGACAATGGTCTCCAGCAGGCGGCGTTTAAGGTCGAAACCCTTGGTTTCGCTAATAGAGGCAGTTTTGGCAACGGACATGTTCACACCTTAGc < 4:234095/149‑1 (MQ=255) ccGTCGAGCACCACACCAACGACCGGACCAAACACGATAAGTGCC‑‑AGCAGGCCA‑GCGACAATGGTCTCCAGCAGGCTGCGTTTAAGGTCGAAACCAAGGGTTTCgac < 7:280630/107‑3 (MQ=255) ccGTCGAGCACCACACCAACGACCGGACCAAACACGATAAGTGCC‑‑AGCAGGCCA‑GCGACAATGGTCTCCAGCAGGCTGCGTTTAAGGTCGAAACCAAGGGTTTCgac > 8:280630/1‑105 (MQ=255) accacaccaACGACCGTCCCACACACGATAAGTGCC‑‑AGCAGGCCA‑GCGACAAGGGTCTCCAGCAGGCTGCGTTTAAGGTCGAAACCCTTGGTTTCGCTAATAGAGGCAGGTTTGGCAACGGACATGTTCACACCTTAGCCACGAGCggg < 4:211786/149‑1 (MQ=255) cacaccaACGACCGGACCAAACACGATAAGTGCC‑‑AGCAGGCCA‑GCGACAATGGTCTCCAGCAGGCTGCGTTTAAGGTCGAAACCCTTGGTTTCGCTAATAGAGGCAGTTTTGGCAACGGACATGTTCACACCTTAGCCAc < 4:320888/140‑1 (MQ=255) cacaccaACGACCGGACCAAACACGATAAGTGCC‑‑AGCAGGCCA‑GCGACAATGGTCTCCAGCAGGCTGCGTTTAAGGTCGAAACCCTTGGTTTCGCTAATAGAGGCAGTTTTGGCAACGGACATGTTCACACCTTAGCCAc > 3:320888/1‑140 (MQ=255) caccaACGACCGGACCAAACACGATAAGTGCC‑‑AGCAGGCCA‑GCGACAATGGTCTCCAGCAGGCTGCGTTTAAGGTCGAAACCCTTGGTTTCGCTAATAGAGGCAGTTTTGGCAACGGACATGTTCACACCTTAGCTACGAGCGGGCGAc > 4:214135/1‑149 (MQ=255) cGACCGGACCAAACACGATAAGTGCC‑‑AGCAGGCCA‑GCGACAATGGTCTCCAGCAGGCTGCGTTTAAGGTCGAAACCCTTGGTTTCGCTAATAGAGGCAGTTTTGGCAACGGACATGTTCACACCTTAGCCACGAGCGGGCGACCcagca < 4:219378/149‑1 (MQ=255) gACCGGACCAAACACGATAAGTGCC‑‑AGCAGGCCA‑GCGACAATGGTCTCCAGCAGGCTGCGTTTAAGGTCGAAACCCTTGGTTTCGCTAATAGAGGCAGTTTTGGCAACGGACATGTTCACACCTTAGCCACGAGCGGGCGACCcagcag < 6:261258/149‑1 (MQ=255) gACCGGACCAAACACGATAAGTGCC‑‑AGCAGGCCA‑GCGACAATGGTCTCCAGCAGGCTGCGTTTAAGGTCGAAACCCTTGGTTTCGCTAATAGAGGCAGTTTTGGCAACGGACATGTTCACACCTTAGCCACGAGCGGGCGACCcagcag < 2:21955/149‑1 (MQ=255) ccGGACCAAACACGATAAGTGCC‑‑AGCAGGCCA‑GCGACAATGGTCTCCAGCAGGCTGCGTTTAAGGTCGAAACCCTTGGTTTCGCTAATAGAGGCAGTTTTGGCAACGGACATGTTCACACCTTAGCCACGAGCGGGCGACCcag < 7:162684/144‑1 (MQ=255) ccGGACCAAACACGATAAGTGCC‑‑AGCAGGCCA‑GCGACAATGGTCTCCAGCAGGCTGCGTTTAAGGTCGAAACCCTTGGTTTCGCTAATAGAGGCAGTTTTGGCAACGGACATGTTCACACCTTAGCCACGAGCGGGCGACCcag > 8:162684/1‑144 (MQ=255) gACCAAACACGATAAGTGCC‑‑AGCAGGCCA‑GCGACAATGGTCTCCAGCAGGCTGCGTTTAAGGTCGAAACCCTTGGTTTCGCTAATAGAGGCAGTTTTGGCAACGGACATGTTCACACCTTAGCCACGAGCGGGCGACCCAGCAGGCCtt > 7:93647/1‑149 (MQ=255) gACCAAACACGATAAGTGCC‑‑AGCAGGCCA‑GCGACAATGGTCTCCAGCAGGCTGCGTTTAAGGTCGAAACCCTTGGTTTCGCTAATAGAGGCAGTTTTGGCAACGGACATGTTCACACCTTAGCCACGAGCGGGCGACCCAGCAGGCCtt < 8:93647/149‑1 (MQ=255) ccATACACGATAAGTGCC‑‑AGCATGCCA‑TCGACAATGTTCTCCAGCAGGCTGCGTTTAAGGTCGAAACCCTTGGTTTCGCTAATAGAGGCAGTTTTGGCAACGGACATGTTCACACCTTAGCCACGAGCGGGCGACCCAGCAGGCCTtgt < 4:108401/149‑1 (MQ=255) aaCACGATAAGTGCC‑‑AGCAGGCCA‑GCGACAATGGTCTCCAGCAGGCTGCGTTTAAGGTCGAAACCCTTGGTTTCGCTAATAGAGGCAGTTTTGGCAACGGACATGTTCACACCTTAGCCACGAGCGGGCGACCcagca > 6:156598/1‑138 (MQ=255) aaCACGATAAGTGCC‑‑AGCAGGCCA‑GCGACAATGGTCTCCAGCAGGCTGCGTTTAAGGTCGAAACCCTTGGTTTCGCTAATAGAGGCAGTTTTGGCAACGGACATGTTCACACCTTAGCCACGAGCGGGCGACCcagca < 5:156598/138‑1 (MQ=255) gATAAGTGCC‑‑AGCAGGCCA‑GCGACAATGGTCTCCAGCAGGCTGCGTTTAAGGTCGAAACCCTTGGTTTCGCTAATAGAGGCAGTTTTg < 5:45559/88‑1 (MQ=255) gATAAGTGCC‑‑AGCAGGCCA‑GCGACAATGGTCTCCAGCAGGCTGCGTTTAAGGTCGAAACCCTTGGTTTCGCTAATAGAGGCAGTTTTg > 6:45559/1‑88 (MQ=255) gTGCC‑‑AGCAGGCCA‑GCGACAATGGTCTCCAGCAGGCTGCGTTTAAGGTCGAAACCCTTGGTTTCGCTAATAGAGGCAGTTTTGGCAACGGACATGTTCACACCTTAGCCACGAGCGGGCGACCCAGCAGGCCTtgt < 1:204376/136‑1 (MQ=255) gTGCC‑‑AGCAGGCCA‑GCGACAATGGTCTCCAGCAGGCTGCGTTTAAGGTCGAAACCCTTGGTTTCGCTAATAGAGGCAGTTTTGGCAACGGACATGTTCACACCTTAGCCACGAGCGGGCGACCCAGCAGGCCTtgt > 2:204376/1‑136 (MQ=255) gTGCC‑‑AGCAGGCCA‑GCGACAATGGTCTCCAGCAGGCTGCGTTTAAGGTCGAAACCCTTGGTTTCGCTAATAGAGGCAGTTTTGGCAACGGACATGTTCACACCTTAGCCACGAGCGGGCGACCCAGCAGGCCTTGTGGGCGGAAGAt > 6:50798/1‑147 (MQ=255) gcagGCCA‑GCGACAATGGTCTCCAGCAGGCTGCGTTTAAGGTCGAAACCCTTGGTTTCGCTAATAGAGGCAGTTTTGGCAACGGACATGTTCACACCTTAGCCACGAGCGGGCGACCCAGCAGGCCTTGTGGGCGGAAGATAAg > 1:146995/1‑144 (MQ=255) gcagGCCA‑GCGACAATGGTCTCCAGCAGGCTGCGTTTAAGGTCGAAACCCTTGGTTTCGCTAATAGAGGCAGTTTTGGCAACGGACATGTTCACACCTTAGCCACGAGCGGGCGACCCAGCAGGCCTTGTGGGCGGAAGATAAg < 2:146995/144‑1 (MQ=255) gCCA‑GCGACAATGGTCTCCAGCAGGCTGCGTTTAAGGTCGAAACCCTTGGTTTCGCTAATAGAGGCAGTTTTGGCAACGGACATGTTCACACCTTAGCCACGAGCGGGCGACCCAGCAGGCCTTGTGGGCGGAAGATAAGGATCATCAc < 5:50798/149‑1 (MQ=255) gCCA‑GCGACAATGGTCTCCAGCAGGCTGCGTTTAAGGTCGAAACCCTTGGTTTCGCTAATAGAGGCAGTTTTGGCAACGGACATGTTCACACCTTAGCCACGAGCGGGCGACCCAGCAGGCCTTGTGGGCGGAAGATAAGGATCATCAc < 2:31815/149‑1 (MQ=255) gCCA‑GCGACAATGGTCTCCAGCAGGCTGCGTTTAAGGTCGAAACCCTTGGTTTCGCTAATAGAGGCAGTTTTGGCAACGGACATGTTCACACCTTAGCCACGAGCGGGCGACCCAGCAGGCCTTGTGGGCGGAAGATAAGGATCATCAc < 6:175973/149‑1 (MQ=255) a‑GCGACAATGGTCTCCAGCAGGCTGCGTTTAAGGTCGAAACCCTTGGTTTCGCTAATAGAGGCAGTTTTGGCAACGGACATGTTCACACCTTAGCCACGAGCGGGCGACCCAGCAGGCCTTGTGGGCGGAAGATAAGGATCATCACcag > 3:79903/1‑149 (MQ=255) aCAATGGTCTCCAGCAGGCTGCGTTTAAGGTCGAAACCCTTGGTTTCGCTAATAGAGGCAGTTTTGGCAACGGACATGTTCACACCTTAGCCACGAGCGGGCGACCCAGCAGGCCTTGTGGGCGGAAGATAAGGATCATCACCagcagc < 1:310895/149‑1 (MQ=255) aaTGGTCTCCAGCAGGCTGCGTTTAAGGTCGAAACCCTTGGTTTCGCTAATAGAGGCAGTTTTGGCAACGGACATGTTCACACCTTAGCCACGAGCGGGCGACCCAGCAGGCCTTGTGGGCGGAAGATAAGGATCATCACCAGCAGCga < 4:79903/149‑1 (MQ=255) agGCTGCGTTTAAGGTCGAAACCCTCGGTTTCGCTAATAGAGGAAGTTTTGGCAACGGACATGTTCACACCTTAGCCACGAGCGGGCGACCCAGCAGGCCTTGTGGGCGGAAGATAAGGATCATCACCAGCAGCGAGAAGCTGAAcaca > 8:170293/1‑149 (MQ=255) gCTGCGTTTAAGGTCGAAACCCTTGGTTTCGCTAATAGAGGCAGTTTTGGCAACGGACATGTTCACACCTTAGCCACGAGCGGGCGACCCAGCAGGCCTTGTgg > 1:160729/1‑104 (MQ=255) gCTGCGTTTAAGCTCGAAACCCTTGGTTTCGCTAATAGAGGCAGTTTTGGCAACGGACATGTTCACACCTTAGCCACGAGCGGGCGACCCAGCAGGCCTTGTgg < 2:160729/104‑1 (MQ=255) cGTTTAAGGTCGAAACCCTTGGTTTCGCTAATAGAGGCAGTTTTGGCAACGGACATGTTCACACCTTAGCCACGAGCGGGCGACCCAGCAGGCCTTGTGGGCGGAAGATAAGGATCATCACCAGCAGCGAGAAGCTGAACACATCCTTg < 3:214135/149‑1 (MQ=255) gcGAAACCAAGGGTTTCGCTAATAGAGGCAGTTTTGGCAACGGACATGTTCACACCTTAGCCACGAGCGGGCGACCCAGCAGGCCTTGTGGGCGGAAGATAAGGATCATCACCAGCAGCGAGAAGCTGAACACATCCTTGTAGTCGGAg > 1:49947/2‑149 (MQ=255) aaCCCTTGGTTTCGCTAATAGAGGCAGTTTTGGCAACGGACATGTTCACACCTTAGCCACGAGCGGGCGACCCAGCAGGCCTTGTGGGCGGAAGATAAGGATCATCACCAGCAGCGAGAAGCTGAACACATCCTTGTAGTCGGAGTTGa > 5:2385/1‑149 (MQ=255) | TCACACCGCCGACCAGCCAGGCCACGCGGCGCGGCTCGGCATTGAAGGTGTAGCCGTCGAGCACCACACCAACGACCGGACCAAACACGATAAGTGCC‑‑AGCAGGCCA‑GCGACAATGGTCTCCAGCAGGCTGCGTTTAAGGTCGAAACCCTTGGTTTCGCTAATAGAGGCAGTTTTGGCAACGGACATGTTCACACCTTAGCCACGAGCGGGCGACCCAGCAGGCCTTGTGGGCGGAAGATAAGGATCATCACCAGCAGCGAGAAGCTGAACACATCCTTGTAGTCGGAGTTGA > NC_002947/5532080‑5532372 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |