| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 471,067 | G→A | 7.1% | intergenic (‑111/+17) | PP_0386 ← / ← rpoD | sensory box protein/RNA polymerase sigma 70 factor |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 471,067 | 0 | G | A | 7.1% | 288.1 / 7.6 | 98 | intergenic (‑111/+17) | PP_0386/rpoD | sensory box protein/RNA polymerase sigma 70 factor |
| Reads supporting (aligned to +/- strand): ref base G (50/41); new base A (3/4); total (53/45) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.00e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.75e-01 | |||||||||||
ATCAGCAACAGAATGGCCGGCTTCAAGGACATGGCAGCCTCGCACTCAGGTGGTCTGAAGTCGAGTGTAGACGGGCATTGCCGCAGGTGTGCAACGGAAGGCGGGCTTTATGTCACGGGCCACTAAAGAAAAACCCCGGCCTGGGCCGGGGTTTTGT‑CATCACTCGTCGAGGAAGGAGCGCAGGTGCTCGCTGCGAGTCGGGTGGCGCA‑GCTTGCGCAACGCCTTCGCTTCGATCTGACGGATCCGCTCACGCGTTACGTCAAACTGCTTGCCCACCTCTTCGAGGGT > NC_002947/470925‑471212 | aTCAGCAACAGAATGGCCGGCTTCAAGGACATGGCAGCCTCGCACTCAGGTGGTCTGAAGTCGAGTGTAGACGGGCATTGCCGCAGGTGTGCAACGGAAGGCGGGCTTTATGTCACGGGCCACTAAAGAAAAACCCCGGCCTGGGCCgg < 5:330212/149‑1 (MQ=255)aTCAGCAACAGAATGGCCGGCTTCAAGGACATGGCAGCCTCGCACTCAGGTGGTCTGAAGTCGAGTGTAGACGGGCATTGCCGCAGGTGTGCAACGGAAGGCGGGCTTTATGTCACGGGCCACTAAAGAAAAACCCCGGCCTGGGCCgg > 6:183553/1‑149 (MQ=255) cAACAGAATGGCCGGCTTCAAGGACATGGCAGCCTCGCACTCAGGTGGTCTGAAGTCGAGTGTAGACGTGAATTGCCGCAGGTGTGCAACGGAAGGCGGGCTTTATGTCACGGGCCACTAAAGAAAAACCCCGGCCTGGGCCGGGGttt < 7:217674/149‑1 (MQ=255) cAACAGAATGGCCGGCTTCAAGGACATGGCAGCCTCGCACTCAGGTGGTCTGAAGTCGAGTGTAGACGGGCATTGCCGCAGGTGTGCAACGGAAGGCGGGCTTTATGTCACGGGCCACTAAAGAAAAACCCCGGCCTGGGcc < 1:126400/142‑1 (MQ=255) cAACAGAATGGCCGGCTTCAAGGACATGGCAGCCTCGCACTCAGGTGGTCTGAAGTCGAGTGTAGACGGGCATTGCCGCAGGTGTGCAACGGAAGGCGGGCTTTATGTCACGGGCCACTAAAGAAAAACCCCGGCCTGGGcc > 2:126400/1‑142 (MQ=255) aaCAGAATGGCCGGCTTCAAGGACATGGCAGCCTCGCACTCAGGTGGTCTGAAGTCGAGTGTAGACGGGCATTGCCGCAGGTGTGCAACGGAAGGCGGGCTTTATGTCACGGGCCACTAAAGAAAAACCCCGGCCTGGGCCGGGGtttt < 6:215894/149‑1 (MQ=255) aaCAGAATGGCCGGCTTCAAGGACATGGCAGCCTCGCACTCAGGTGGTCTGAAGTCGAGTGTAGACGGGCATTGCCGCAGGTGTGCAACGGAAGGCGGGCTTTATGTCACGGGCCACTAAAGAAAAACCCCGGCCTGGGCCGGGGtttt < 6:128982/149‑1 (MQ=255) cAGAATGGCCGGCTTCAATGACATTGCAGCCTCGCACTCAGGTGTTCTGAAGTCGAGTGTAGACGGGCATTGCCGCAGGTGTGCAACGGAAGGCTGGCTTTATGTCACGGGCCACTAAAGAAAAACCCCGGCCCAGGCCGGGGtttttc < 4:212164/149‑3 (MQ=255) aGAATGGCCGGCTTCAAGGACATGGCAGCCTCGCACTCAGGTGGTCTGAAGTCGAGTGTAGACGGGCATTGCCGCAGGTGTGCAACGGAAGGCGGGCTTTATGTCACGGGCCACTAAAGAAAAACCCCGGCCTGGGCCGGGGTTTTGt > 2:199265/1‑148 (MQ=255) aaTGGCCGGCTTCAAGGACATGGCAGCCTCGCACTCAGGTGGTCTGAAGTCGAGTGTAGACGGGCATTGCCGCAGGTGTGCAACGGAAGGCGGGCTTTATGTCACGGGCCACTAAAGAAAAACCCCGGCCTGGGCCGGGGTTTTGt‑cat > 2:329548/1‑149 (MQ=255) aaTGGCCGGCTTCAAGGACATGGCAGCCTCGCACTCAGGTGGTCTGAAGTCGAGTGTAGACGGGCATTGCCGCAGGTGTGCAACGGAAGGCGGGCTTTATGTCACGGGCCACTAAAGAAAAACCCCGGCCTGGGCCGGGGTTTTGt‑cat > 1:157713/1‑149 (MQ=255) aaTGGCCGGCTTCAAGGACATGGCAGACTCGCAATCAGGTGGTCTGAAGTCGAGTGTAGACGGGCATTGCCGCAGGTGTGCCACGGAAGGCGGGCTTTATGTCACGGTCCACTAAAGAAAAACCCCGGACTGGGCAGGGGTTTTGtaa > 2:81964/1‑146 (MQ=255) tGGCCTGCTTCAAGGAAATGGCAGCCTCGCACTCAGGTGGTATGAAGTCGAGTGTAGACTTGCATTGCCGCATGTGTGCAACGGAATGAGGGCTTTATGTCACGGGCCACTAAAGAAAAACCCCGGCCTGGGCCGGGGTTTTGt‑catc > 8:65244/1‑148 (MQ=255) tGGCCGGCTGCAAGGACATGCCAGCCTCGCACTCAGGTGGTCTGAAGTCGAGTGTAGACGGGCATTGCCGCAGGGGTGCAACGGAAGGCGGGCTTTATGTCACGGGCCACTAAAGAAAAACCCCGGCCTGGGCCGGGGTTTTGt‑catca < 1:285209/149‑1 (MQ=255) ggCCGGCTTCAAGGACATGGCAGCCTCGCACTCAGGTGGTCTGAAGTCGAGTGTAGACGGGCATTGCCGCAGGTGTGCAACGGAAGGCGGGCTTTATGTCACGGGCCACTAAAGAAAAACCCCGGCCCAGGCCGGGGtttttc > 5:74694/1‑141 (MQ=255) ggCCGGCTTCAAGGACATGGCAGCCTCGCACTCAGGTGGTCTGAAGTCGAGTGTAGACGGGCATTGCCGCAGGTGTGCAACGGAAGGCGGGCTTTATGTCACGGGCCACTAAAGAAAAACCCCGGCCCAGGCCGGGGtttttc < 6:74694/143‑3 (MQ=255) cGGCTTCAAGGACATGGCAGCCTCGCACTCAGGTGGTCTGAAGTCGAGTGTAGACGGGCATTGCCGCAGGTCTGCAACGGAAGGCGGGCTTTATGTCACGGGCCACTAAAGAAAAACCCCGGCCTGGGCCGGGGTTTTGT‑CATCACtcg > 6:264833/1‑149 (MQ=255) ggCTTCAAGGACATGGCAGCCTCGCACTCAGGTGGTCTGAAGTCGAGTGTAGACCGGCATTGCCGCAGGTGTGCAACGGAAGGCGGGCTTTATGTCACGGGCCACTAAAGAAAAACCCCGGCCTGGGCCGGGGTTTTGT‑CATCACtcgt < 6:138041/149‑1 (MQ=255) tCAAGGACATGGCAGCCTCGCACTCAGGTGGTCTGAAGTCGAGTGTAGACGGGCATTGCCGCAGGTGTGCAACGGAAGGCGGGCTTTATGTCACGGGCCACTAAAGAAAAACCCCGGCCTGGGCCGGGGTTTTGT‑CATCACTCGTCGag > 2:227195/1‑149 (MQ=255) cAAGGACATGGCAGCCTCGCACTCAGGTGGTCTGAAGTCGAGTGTAGACGGGCATTGCCGCAGGTGTGCAACGGAAGGCGGGCTTTATGTCACGGGCCACTAAAGAAAAACCCCGGCCTGGGCCGGGGTTTTGT‑CATCACTCGTCGa < 4:162544/147‑1 (MQ=255) aaGGACATGGCAGCCTCGCACTCAGGTGGTCTGAAGTCGAGTGTAGACGGGCATTGCCGCAGGTGTGCAACGGAAGGCGGGCTTTATGTCACGGGCCACTAAAGAAAAACCCCGGCCTGGGCCGGGGTTTTGT‑CATCACTCGTCGagg > 6:124735/1‑148 (MQ=255) gACATGGCAGCCTCGCACTCAGGTGGTCTGAAGTCGAGTGTAGACGGGCATTGCCGCAGGTGTGCAACGGAAGGCGGGCTTTATGTCACGGGCCACTAAAGAAAAACCCCGGCCTGGGCCGGGGTTTTGT‑CATCACtcgtc < 8:39000/141‑1 (MQ=255) gACATGGCAGCCTCGCACTCAGGTGGTCTGAAGTCGAGTGTAGACGGGCATTGCCGCAGGTGTGCAACGGAAGGCGGGCTTTATGTCACGGGCCACTAAAGAAAAACCCCGGCCTGGGCCGGGGTTTTGT‑CATCACtcgtc > 7:39000/1‑141 (MQ=255) gACATGGCAGCCTCGCACTCAGGTGGTCTGAAGTCGAGTGTAGACGGGCATTGCCGCAGGTGTGCAACGGAAGGCGGGCTTTATGTCACGGGCCACTAAAGAAAAACCCCGGCCTGGGCCGGGGTTTTGT‑CATCACTCGTCGaggaag > 4:22411/1‑148 (MQ=255) aCATGGCAGCCTCGCACTCAGGTGGTCTGAAGTCGAGTGTAGACGGGCATTGCCGCAGGTGTGCAACGGAAGGCGGGCTTTATGTCACGGGCCACTAAAGAAAAACCCCGGCCTGGGCCGGGGTTTTGT‑CATCACTCGTCGaggaagga < 7:22824/149‑1 (MQ=255) aTGGCAGCCTCGCACTCAGGTGGTCTGAAGTCGAGTGTAGACGGGCATTGCCGCAGGTGTGCAACGGAAGGAGGGCTTTATGTCACGGGCCACTAAAGAAAAACCCCGGCCTGGGCCGGGGTTTTGT‑CATCAATCGTCGAGGAAGGAgc > 8:212035/1‑149 (MQ=255) ggCAGCCTCGCACTCAGGTGGTCTGAAGTCGAGTGTAGACGGGCATTGCCGCAGGTGTGCAACGGAAGGCGGGCTTTATGTCACGGGCCACTAAAGAAAAACCCCGGCCTGGGCCGGGGTTTTGT‑CATCACTCGTCGaggaagga > 6:136702/1‑145 (MQ=255) ggCAGCCTCGCACTCAGGTGGTCTGAAGTCGAGTGTAGACGGGCATTGCCGCAGGTGTGCAACGGAAGGCGGGCTTTATGTCACGGGCCACTAAAGAAAAACCCCGGCCTGGGCCGGGGTTTTGT‑CATCACTCGTCGaggaagga < 5:136702/145‑1 (MQ=255) ccTCGCACTCAGGTGGTCTGAAGTCGAGTGTAGACGGGCATTGCCGCAGGTGTGCAACGGAAGGCGGGCTTTATGTCACGGGCCACTAAAGAAAAACCCCGGCCTGGGCCGGGGTTTTGT‑CATCACTCGTCGAGGAAGGAGCGCAGGTg < 2:313679/149‑1 (MQ=255) tCGCACTCAGGTGGTCTGAAGTCGAGTGTAGACGGGCATTGCCGCAGGTGTGCAACGGAAGGCGGGCTTTATGTCACGGGCCACTAAAGAAAAACCCCGGCCTGGGCCGGGGTTTTGT‑CATCACTCGTCGaggaagg < 4:170010/137‑1 (MQ=255) tCGCACTCAGGTGGTCTGAAGTCGAGTGTAGACGGGCATTGCCGCAGGTGTGCAACGGAAGGCGGGCTTTATGTCACGGGCCACTAAAGAAAAACCCCGGCCTGGGCCGGGGTTTTGT‑CATCACTCGTCGaggaagg > 3:170010/1‑137 (MQ=255) aGGTGGTCTGAAGTCGAGTGTAGACGGGCATTGCCGCAGGTGTGCAACGGAAGGCGGGCTTTATGTCACGGGCCACTAAAGAAAAACCCCGGCCTGGGCCGGGGTTTTGT‑CATCACTCGTCGAGGAAGGAGCGCAGGTGCTCGCTGc < 5:124735/147‑1 (MQ=255) aGGTGGTCTGAAGTCGAGTGTAGACGGGCATTGCCGCAGGTGTGCAACGGAAGGCGGGCTTTATGTCACGGGCCACTAAAGAAAAACCCCGGCCTGGGCCGGGGTTTTGT‑CATCACTCGTCGAGGAAGGAGCGCAGGTGCTCGCTGc < 2:157713/147‑1 (MQ=255) gtggtCTGAAGTCGAGTGTAGACGGGCATTGCCGCAGGTGTGCAACGGAAGGCGGGCTTTATGTCACGGGCCACTAAAGAAAAACCCCGGCCTGGGCCGGGGTTTTGT‑CATCACTCGTCGAGGAAGGAGCGCAGGTGCTCGCTGCGAGt < 1:227195/149‑1 (MQ=255) gtggtCTGAAGTCGAGTGTAGACGGGCATTGCCGCAGGTGTGCAACGGAAGGCGGGCTTTATGTCACGGGCCACTAAAGAAAAACCCCGGCCTGGGCCGGGGTTTTGT‑CATCACTCGTCGAGGAAGGAGCGCAGGTGCTCGCTGCGAGt > 2:328103/1‑149 (MQ=255) tCTGAAGTCGAGTGTAGACGGGCATTGCCGCAGGTGTGCAACGGAAGGCGGGCTTTATGTCACGGGCCACTAAAGAAAAACCCCGGCCTGGGCCGGGGTTTTGT‑CATCACTCGTCGAGGAAGGAGCGCAGGTGCTCGCTGCGAGTCggg > 7:127236/1‑149 (MQ=255) tGAAGTCGAGTGTAGACGGGCATTGCCGCAGGTGTGCAACGGAAGGCGGGCTTTATGTCACGGGCCACTAAAGAAAAACCCCGGCCTGGGCCGGGGTTTTGT‑CATCACTCGTCGAGGAAGGAGCGCAGGTGCTCGCTGCGAGTCGGGTg > 7:292381/1‑149 (MQ=255) tGAAGTCGAGTGTAGACGGGCATTGCCGCAGGTGTGCAACGGAAGGCGGGCTTTATGTCACGGGCCACTAAAGAAAAACCCCGGCCTGGGCCGGGGTTTTGT‑CATCACTCGTCGAGGAAGGAGCGCAGGTGCTCGCTGCGAGTCGGGTg > 7:103895/1‑149 (MQ=255) aaGTCGAGTGTAGACGGGCATTGCCGCAGGTGTGCAACGGAAGGCGGGCTTTATGTCACGGGCCACTAAAGAAAAACCCCGGCCTGGGCCGGGGTTTTGT‑CATCACTCGTCGAGGAAGGAGCGCAGGTGCTCGCTGCGAGTCGGGTGgc > 1:286796/1‑149 (MQ=255) gTCGAGTGTAGACGGGCATTGCCGCAGGTGTGCAACGGAAGGCGGGCTTTATGTCACGGGCCACTAAAGAAAAACCCCGGCCTGGGCCGGGGTTTTGT‑CATCACTCGTCGAGGAAGGAGCGCAGGTGCTCGCTGCGAGTCGGGTGgcga < 4:318885/149‑2 (MQ=255) gtgtAGACGGGCATTGCCGCAGGTGTGCAACGGAAGGCGGGCTTTATGTCACGGGCCACTAAAGAAAAACCCCGGCCGGGGCCGGGGTTTTGT‑CATCACTCGTCGAGGAAGGAGCGCAGGTGCTCGCTGCGAGTCGGGTGGCGCA‑GCtt < 5:84134/149‑1 (MQ=255) tgtAGACGGGCATTGCCGCAGGTGTGCAACGGAAGGCGGGCTTTATGTCACGGGCCACTAAAGAAAAACCCCGGCCTGGGCCGGGGTTTTGT‑CATCACTCGTCGAGGAAGGAGCGCAGGTGCTCGCTGCGAGTCGGGTGGCGCA‑GCTTg < 5:188683/149‑1 (MQ=255) gtAGACGGGCATTGCCGCAGGTGTGCAACGGAAGGCGGGCTTTATGTCACGGGCCACTAAAGAAAAACCCCGGCCTGGGCCGGGGTTTTGT‑CATCACTCGTCGAGGAAGGAGCGCAGGTGCTCGCTGCGAGTCGGGTGGCGCA‑GCTTg < 3:43094/148‑1 (MQ=255) gtAGACGGGCATTGCCGCAGGTGTGCAACGGAAGGCGGGCTTTATGTCACGGGCCACTAAAGAAAAACCCCGGCCTGGGCCGGGGTTTTAT‑CATCACTCGTCGTGGAAGGAGCGCAGGTGCTCGCTGCGAGTCGGGTGGCGCA‑GCTTgc > 6:173559/1‑149 (MQ=255) tAGACGGGCATTGCCGCTGGTGTGCAAGGGAAGGCGGGCTTTATGTCACGGGCCACTAAAGAAAAACCCCGGCCTGGGCCGTGGTTTTGT‑CATCACTCGTCGAGGAAGGAGCGCAGGTGCTCGCTGCGAGTCGGGTGGCGCA‑GCTTgcg < 3:318116/149‑1 (MQ=255) aGACGGGCATTGCCGCAGGTGTGCAACGGAAGGCGGGCTTTATGTCACGGGCCACTAAAGAAAAACCCCGGCCTGGGCCGGGGTTTTGT‑CATCACTCGTCGAGGAAGGAgcg > 5:263992/1‑112 (MQ=255) aGACGGGCATTGCCGCAGGTGTGCAACGGAAGGCGGGCTTTATGTCACGGGCCACTAAAGAAAAACCCCGGCCTGGGCCGGGGTTTTGT‑CATCACTCGTCGAGGAAGGAgcg < 6:263992/112‑1 (MQ=255) cGGGCATTGCCGCAGGTGTGCAACGGAAGGCGGGCTTTATGTCACGGGCCACTAAAGAAAAACCCCGGCCTGGGCCGGGGTTTTGT‑CATCACTCGTCGAGGAAGGAGCGCAGGTGCTCGCTGCGAGTCGGGTGGCGCA‑GCTTGCGCAAc < 4:7685/149‑1 (MQ=255) gggCATTGCCGCAGGTGTGCAACGGAAGGCGGGCTTTATGTCACGGGCCACTAAAGAAAAACCCCGGCCTGGGCCGGGGTTTTGT‑CATCACTCGTCGAGGAAGGAGCGCAGGTGCTCGCTGCGAGTCGGGTGGCGCA‑GCTTGCGCAACg > 2:7634/1‑149 (MQ=255) aTTGCCGCAGGTGTGCAACGGAAGGCGGGCTTTATGTCACGGGCCACTAAAGAAAAACCCCGGCCTGGGCCGGGGTTTTGT‑CATCACTCGTCGAGGAAGGAGCGCAGGTGCTCGCTGCGAGTCGGGTGGCGCA‑GCTTGCGCAACGCctt > 6:235157/1‑149 (MQ=255) cGCAGGTGTGCAACGGAAGGCGGGCTTTATGTCACGGGCCACTAAAGAAAAACCCCGGCCTGGGCCGGGGTTTTGT‑CATCACTCGTCGAGGAAGGAGCGCAGGTGCTCGCTGCGAGTCGGGTGGCGCA‑GCTTGCGCAACGCcttcgctt > 4:206255/1‑149 (MQ=255) gCAGGTGTGCAACGGAAGGCGGGCTTTATGTCACGGGCCACTAAAGAAAAACCCCGGCCTGGGCCGGGGTTTTGT‑CATCACTCGTCGAGGAAGGAGCGCAGGTGCTCGCTGCGAGTCGGGTGGCGCA‑GCTTGCGCAACGCcttcgcttc < 1:328103/149‑1 (MQ=255) aGGTGTGCAACGGAAGGCGGGCTTTATGTCACGGGCCACTAAAGAAAAACCCCGGCCTGGGCCGGGGTTTTGT‑CATCACTCGTCGAGGAAGGAGCGCAGGTGCTCGCTGCGAGTCGGGTGGCGCA‑GCTTGCGCAACGCCTTCGCTTCGa < 1:329548/149‑1 (MQ=255) aGGTCTGCAACGGAAGGCGGGCTTTATGTCACGGGCCACTAAAGAAAAACCCCGGCCTGGGCCGGGGTTTTGT‑CATCACTCGTCGAGGAAGGAGCGCAGGTGCTCGCTGCGAGTCGGGTGGCGCA‑GCTTGCGCAACGCCTTCGCTTCGa < 5:264833/149‑1 (MQ=255) gtgtGCAACGGAAGGCGGGCTTTATGTCACGGGCCACTAAAGAAAAACCCCGGCCTGGGCCGGGGTTTTGT‑CATCACTCGTCGAGGAAGGAGCGCAGGTGCTCGCTGCGAGTCGGGTGGCGCA‑GCTTGCGCAACGCcttcgctt > 3:167103/1‑144 (MQ=255) gtgtGCAACGGAAGGCGGGCTTTATGTCACGGGCCACTAAAGAAAAACCCCGGCCTGGGCCGGGGTTTTGT‑CATCACTCGTCGAGGAAGGAGCGCAGGTGCTCGCTGCGAGTCGGGTGGCGCA‑GCTTGCGCAACGCcttcgctt < 4:167103/144‑1 (MQ=255) tgtgCAACGGAAGGCGGGCTTTATGTCACGGGCCACTAAAGAAAAACCCCGGCCTGGGCCGGGGTTTTAT‑CATCACTCGTCGTGGAAGGAGCGCAGGTGCTCGCTGCGAGTCGGGTGGCGCA‑GCTTGCGCAACGCCTTCGCTTCGATCt < 5:173559/149‑1 (MQ=255) tgCAACGGAAGGCGGGCTTTATGTCACGGGCCACTAAAGAAAAACCCCGGCCTGGGCCGGGGTTTTGT‑CATCACTCGTCGAGGAAGGAGCGCAGGTGCTCGCTGCGAGTCGGGTGGCGCA‑GCTTGCGCAACGCCTTCGCTTCGATCTGa < 5:235157/149‑1 (MQ=255) gCAACGGAAGGCGGGCTTTATGTCACGGGCCACTAAAGAAAAACCCCGGCCTGGGCCGGGGTTTTGT‑CATCACTCGTCGAGGAAGGAGCGCAGGTGCTCGCTGCGAGTCGGGTGGCGCA‑GCTTGCGCAACGCCTTCGCTTCGATCTGAc > 8:285395/1‑149 (MQ=255) aCGGAAGGCGGGCTTTATGTCACGGGCCACTAAAGAAAAACCCCGGCCTGGGCCGGGGTTTTGT‑CATCACTCGTCGAGGAAGGAGCGCAGGTGCTCGCTGCGAGTCGGGTGGCGCA‑GCTTGCGCAACGCCTTCGCTTCGATCTGACGGa > 1:130344/1‑149 (MQ=255) aCGGAAGGCGGGCTTTATGTCACGGGCCACTAAAGAAAAACCCCGGCCTGGGCCGGGGTTTTGT‑CATCACTCGTCGAGGAAGGAGCGCAGGTGCTCGCTGCGAGTCGGGTGGCGCA‑GCTTGCGCAACGCCTTCGCTTCGATCTGACGGa < 8:292381/149‑1 (MQ=255) aCGGAAGGCGGGCTTTATGTCACGGGCCACTAAAGAAAAACCCCGGCCTGGGCCGGGGTTTTGT‑CATCACTCGTCGAGGAAGGAGCGCAGGTGCTCGCTGCGAGTCGGGTGGCGCA‑GCTTGCGCAACGCCTTCGCTTCGATCTGACGGa > 2:226667/1‑149 (MQ=255) cGGAAGGCGGGCTTTATGTCACGGGCCACTAAAGAAAAACCCCGGCCTGGGCCGGGGTTTTGT‑CATCACTCGTCGAGGAAGGAGCGCAGGTGCTCGCTGCGAGTCGGGTGGCGCA‑GCTTGCGCAACGCCTTCGCTTCGATCTGACGGAt < 3:22411/149‑1 (MQ=255) cGGGCTTTATGTCACGGGCCACTAAAGAAAAACCCCGGCCTGGGCCGGGGTTTTGT‑CATCACTCGTCGAGGAAGGAGCGCAGGTGCTCGCTGCGAGTCGGGTGGCGCA‑GCTTGCGCAACGCCTTCGCTTCGATCTGACGGATCCGCTCa > 1:237696/1‑149 (MQ=255) gCTTTATGTCACGGGCCACTAAAGAAAAACCCCGGCCTGGGCCGGGGTTTTGT‑CATCACTCGTCGAGGAAGGAGCGCAGGTGCTCGCTGCGAGTCGGGTGGCGCA‑GCTTGCGCAACGCCTTCGCTTCGATCTGACGGATCCGCTCAcgc < 1:226667/149‑1 (MQ=255) cTTTATGTCACGGGCCACTAAAGAAAAACCCCGGCCTGGGCCGGGGTTTTGT‑CATCACTCGTCGAGGAAGGAGCGCAGGTGCTCGCTGCGAGTCGGGTGGCGCA‑GCTTGCGCAACGCCTTCGCTTCGATCTGACGGATCCGCTCAcgcg > 8:37886/1‑149 (MQ=255) cTTTATGTCACGGGCCACTAAAGAAAAACCCCGGCCTGGGCCGGGGTTTTGT‑CATCACTCGTCGAGGAAGGAGCGCAGGTGCTCGCTGCGAGTCGGGTGGCGCA‑GCTTGCGCAACGCCTTCGCTTCGATCTGACGGATCCGCTCAcgcg > 2:228216/1‑149 (MQ=255) cTTTATGTCACGGGCCACTAAAGAAAAACCCCGGCCTGGGCCGGGGTTTTGT‑CATCACTCGTCGAGGAAGGAGCGCAGGTGCTCGCTGCGAGTCGGGTGGCGCA‑GCTTGCGCAACGCCTTCGCTTCGATCTGACGGATCCGCTCAcgcg > 6:333760/1‑149 (MQ=255) tGTCACGGGCCACTAAAGAAAAACCCCGGCCTGGGCCGGGGTTTTGT‑CATCACTCGTCGAGGAAGGAGCGCAGGTGCTCGCTGCGAGTCGGGTGGCGCA‑GCTTGCGCAACGCCTTCGCTTCGATCTGACGGATCCGCTCACGCGTTAc < 1:199265/148‑1 (MQ=255) tGTCACGGGCCACTAAAGAAAAACCCCGGCCTGGGCCGGGGTTTTGT‑CATCACTCGTCGAGGAAGGAGCGCAGGTGCTCGCTGCGAGTCGGGTGGCGCA‑GCTTGCGCAACGCCTTCGCTTCGATCTGACGGATCCGCTCACGCGTTAc < 7:65244/148‑1 (MQ=255) tCACGGGCCACTAAAGAAAAACCCCGGCCTGGGGCGGGGTTTTGT‑CATCACTCGTCGTCGTATGAGGGCAGGTGGTCGCTGCGAGTCGGGTGGCGCACACTTGCGCAACGCCTTCGCTTCGATCTg < 1:14713/126‑1 (MQ=255) tCACGGGCCACTAAAGAAAAACCCCGGCCTGGGCCGGGGTTTTGT‑CATCACTCGTCGAGGAAGGAGCGCAGGTGCTCGCTGCGAGTCGGGTGGCGCA‑GCTTGCGCAACGCCTTCGCTTCGATCTg > 2:14713/1‑125 (MQ=255) aCTAAAGAAAAACCCCGGCCTGGGCCGGGGTTTTGT‑CATCACTCGTCGAGGAAGGAGCGCAGGTGCTCGCTGCGAGTCGGGTGGCGCA‑GCTTGCGCAACGCCTTCGCTTCGATCTGACGGATCCGCTCACGCGTTACGTCAAACTGCtt < 6:329169/149‑1 (MQ=255) cTAAAGAAAAACCCCGGCCTGGGCCGGGGTTTTGTGCATCACTCGTCGAGGAAGGAGCGCAGGTGCTCGCTGCGAGTCGGGTGGCGCA‑GCTTGCGCAACGCCTTCGCTTCGATCTGACGGATCCGCTCACGCGTTACGTCAAACTGCtt > 1:225839/1‑149 (MQ=255) cTAAAGAAAAACCCCGGCCTGGGCCGGGGTTTTGT‑CATCACTCGTCGAGGAAGGAGCGCAGGTGCTCGCTGCGAGTCGGGTGGCGCA‑GCTTGCGCAACGCCTTCGCTTCGATCTGACGGATCCGCTCACGCGTTACGTCAAACTGCTTg > 8:259548/1‑149 (MQ=255) tAAAGAAAAACCCCGGCCTGGGCCGGGGTTTTGT‑CATCACTCGTCGAGGAAGGAGCGCAGGTGCTCGCTGCGAGTCGGGTGGCGCA‑GCTTGCGCAACGCCTTCGCTTCGATCTGACGGATCCGCTCACGCGTTACGTCAAACTGCTTGc > 3:317493/1‑149 (MQ=255) tAAAGAAAAACCCCGGCCTGGGCCGGGGTTTTGT‑CATCACTCGTCGAGGAAGGAGCGCAGGTGCTCGCTGCGAGTCGGGTGGCGCA‑GCTTGCGCAACGCCTTCGCTTCGATCTGACGGATCCGCTCACGCGTTACGTCAAACTGCTTGc > 3:318702/1‑149 (MQ=255) aaGAAAAACCCCGGCCTGGGCCGGGGTTTTGT‑CATCACTCGTCGAGGAAGGAGCGCAGGTGCTCGCTGCGAGTCGGGTGGCGCA‑GCTTGCGCAACGCCTTCGCTTCGATCTGACGGATCCGCTCAc < 7:112825/126‑1 (MQ=255) aaGAAAAACCCCGGCCTGGGCCGGGGTTTTGT‑CATCACTCGTCGAGGAAGGAGCGCAGGTGCTCGCTGCGAGTCGGGTGGCGCA‑GCTTGCGCAACGCCTTCGCTTCGATCTGACGGATCCGCTCAc < 7:117736/126‑1 (MQ=255) aaGAAAAACCCCGGCCTGGGCCGGGGTTTTGT‑CATCACTCGTCGAGGAAGGAGCGCAGGTGCTCGCTGCGAGTCGGGTGGCGCA‑GCTTGCGCAACGCCTTCGCTTCGATCTGACGGATCCGCTCAc > 8:112825/1‑126 (MQ=255) aaGAAAAACCCCGGCCTGGGCCGGGGTTTTGT‑CATCACTCGTCGAGGAAGGAGCGCAGGTGCTCGCTGCGAGTCGGGTGGCGCA‑GCTTGCGCAACGCCTTCGCTTCGATCTGACGGATCCGCTCAc > 8:117736/1‑126 (MQ=255) aaGAAAAACCCCGGCCTGGGCCGGGGTTTTGT‑CATCACTCGTCGAGGAAGGAGCGCAGGTGCTCGCTGCGAGTCGGGTGGCGCA‑GCTTGCGCAACGCCTTCGCTTCGATCTGACGGATCCGCTCACGCGTTACGTCAAACTGCTTGcc > 7:247609/1‑148 (MQ=255) acaaacCCCCGGCCCAGGCCGGGGTTTTGT‑CATCACTCGTCGAGGAAGGAGCGCAGGTGCTCGCTGCGAGTCGGGTGGCGCA‑GCTTGCGCAACGCCTTCGCTTCGATCTGACGGATCCGCTCACGCGTTACGTCAAACTGCTTGCCCAc < 8:268389/147‑1 (MQ=255) aaaaaCCCCGGCCTGGGCCGGGGTTTTGT‑CATCACTCGTCGAGGAAGGAGCGCAGGTGCTCGCTGCGAGTCGGGTGGCGCA‑GCTTGCGCAACGCCTTCGCTTCGATCTGACGGATCCGCTCACGCGTTACGTCAAACTGCTTGCCCAcc > 2:2906/1‑149 (MQ=255) aaaaaCCCCGGCCTGGGCCGGGGTTTTGT‑CATCACTCGTCGAGGAAGGAGCGCAGGTGCTCGCTGCGAGTCGGGTGGCGCA‑GCTTGCGCAACGCCTTCGCTTCGATCTGACGGATCCGCTCACGCGTTACGTCAAACTGCTTGCCCAcc > 1:233037/1‑149 (MQ=255) aaaaCCCCGGCCCAGGCCGGGGTTTTGT‑CATCACTCGTCGAGGAAGGAGCGCAGGTGCTCGCTGCGAGTCGGGTGGCGCA‑GCTTGCGCAACGCCTTCGCTTCGATCTGACGGATCCGCt > 1:219047/1‑119 (MQ=255) aaaaCCCCGGCCCAGGCCGGGGTTTTGT‑CATCACTCGTCGAGGAAGGAGCGCAGGTGCTCGCTGCGAGTCGGGTGGCGCA‑GCTTGCGCAACGCCTTCGCTTCGATCTGACGGATCCGCt < 2:219047/119‑1 (MQ=255) aaaCCCCGGCCTGGGCCGGGGTTTTGT‑CATCACTCGTCGAGGAAGGAGCGCAGGTGCTCGCTGCGAGTCGGGTGGCGCA‑GCTTGCGCAACGCCTTCGCTTCGATCTGACGGATCCGCTCACGCGTTACGTCAAACTGCTTGCCCACctc > 5:58169/1‑149 (MQ=255) aaaCCCCGGCCTGGGCCGGGGTTTTGT‑CATCACTCGTCGAGGAAGGAGCGCAGGTGCTCGCTGCGAGTCGGGTGGCGCA‑GCTTGCGCAACGCCTTCGCTTCGATCTGACGGATCCGCTCACGCGTTACGTCAAACTGCTTGCCCACctc > 6:326890/1‑149 (MQ=255) aCCCCGGCCTGGGCCGGGGTTTTGT‑CATCACTCGTCGAGGAAGGAGCGCAGGTGCTCGCTGCGAGTCGGGTGGCGCA‑GCTTGCGCAACGCCTTCGCTTCGATCTGACGGATCCGCTCACGCGTTACGTCAAACTGCTTGCCCACCTCtt < 1:2906/149‑1 (MQ=255) cccGGCCTGGGCCGGGGTTTTGT‑CATCACTCGTCGAGGAAGGAGCGCAGGTGCTCGCTGCGAGTCGGGTGGCGCA‑GCTTGCGCAACGCCTTCGCTTCGATCTGACGGATc > 1:52374/1‑110 (MQ=255) cccGGCCTGGGCCGGGGTTTTGT‑CATCACTCGTCGAGGAAGGAGCGCAGGTGCTCGCTGCGAGTCGGGTGGCGCA‑GCTTGCGCAACGCCTTCGCTTCGATCTGACGGATc < 2:52374/110‑1 (MQ=255) cccGGCCTGGGCCGGGGTTTTGT‑CATCACTCGTCGAGGAAGGAGCGCAGGTGCTCGCTGCGAGTCGGGTGGCGCA‑GCTTGCGCAACGCCTTCGCTTCGATCTGACGGATCCGCTCACGCGTTACGTCAAACTGCTTGCCCACCTCTTc > 1:210318/1‑148 (MQ=255) cccGGCCTGGGCCGGGGTTTTGT‑CATCACTCGTCGAGGAAGGAGCGCAGGTGCTCGCTGCGAGTCGGGTGGCGCA‑GCTTGCGCAACGCCTTCGCTTCGATCTGACGGATCCGCTCACGCGTTACGTCAAACTGCTTGCCCACCTCTTc > 7:325299/1‑148 (MQ=255) ccGGCCCAGGCCGGGGTTTTGT‑CATCACTCGTCGAGGAAGGAGCGCAGGTGCTCGCTGCGAGTCGGGTGGCGCA‑GCTTGCGCAACGCCTTCGCTTCGATCTGACGGATCCGCTCACGCGTTACGTCAAACTGCTTGCCCACCTCTTc > 5:289557/1‑147 (MQ=255) cGGCCTGGGCCGGGGTTTTGT‑CATCACTCGTCGAGGAAGGAGCGCAGGTGCTCGCTGCGAGTCGGGTGGCGCA‑GCTTGCGCAACGCCTTCGCTTCGATCTGACGGATCCGCTCACGCGTTACGTCAAACTGCTTGCCCACCTCTTCGAg > 3:18122/1‑149 (MQ=255) ggCCTGGGCCGGGGTTTTGT‑CATCACTCGTCGAGGAAGGAGCGCAGGTGCTCGCTGCGAGTCGGGTGGCGCA‑GCTTGCGCAACGCCTTCGCTTCGATCTGACGGATCCGCTCACGCGTTACGTCAAACTGCTTGCCCACCTCTTCGAgg < 7:285395/149‑1 (MQ=255) ccTGGGACGGGGTTTTGT‑CATCACTCGTCGAGGAAGGAGCGCAGGTGCTCGCTGCGAGTCGGGTGGCGCA‑GCTTGCGCAACGCCTTCGCTTCGATCTGACGGATCCGCTCACGCGTTACGTCAAACTGCTTGCCCACCTCTTCGAGGgt > 5:262194/1‑149 (MQ=255) | ATCAGCAACAGAATGGCCGGCTTCAAGGACATGGCAGCCTCGCACTCAGGTGGTCTGAAGTCGAGTGTAGACGGGCATTGCCGCAGGTGTGCAACGGAAGGCGGGCTTTATGTCACGGGCCACTAAAGAAAAACCCCGGCCTGGGCCGGGGTTTTGT‑CATCACTCGTCGAGGAAGGAGCGCAGGTGCTCGCTGCGAGTCGGGTGGCGCA‑GCTTGCGCAACGCCTTCGCTTCGATCTGACGGATCCGCTCACGCGTTACGTCAAACTGCTTGCCCACCTCTTCGAGGGT > NC_002947/470925‑471212 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |