Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 5,740,471 | A→T | 30.8% | intergenic (+36/+35) | hutF → / ← PP_5037 | formiminoglutamate deiminase/lipocalin family lipoprotein |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 5,740,471 | 0 | A | T | 30.8% | 52.6 / 31.5 | 52 | intergenic (+36/+35) | hutF/PP_5037 | formiminoglutamate deiminase/lipocalin family lipoprotein |
Reads supporting (aligned to +/- strand): ref base A (15/18); new base T (6/10); total (22/30) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 7.60e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.92e-01 |
ATGTGATGGTGAATGGGCAATGGGTGGTGCGCCAGGGGCGGCATGCCCAGGAAGATGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGGTT‑GCGTTGCAGCCCTTCGCGTGCAAGCCCGCGAAGGGTTGCAACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTTCTCACGCTCCCAGGCCGGCAG > NC_002947/5740332‑5740616 | aTGTGATGGTGAATGGGCAATGGGTGGTGCGCCAGGGGCGGCATGCCCAGGAAGATGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGGTT‑GCGTTGCAGCCCTTCGCGTGCAAGCCCGCGaa < 2:318465/149‑1 (MQ=255) tgtgATGGTGAATGGGCAATGGGTGGTGCGCCAGGGGCGGCATGCCCAGGAAGATGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGGTT‑GCGTTGCAGCCCTTCGCGTGCAAGCCCGCGAAg < 3:134779/149‑1 (MQ=255) tgtgATGGTGAATGGGCAATGGGTGGTGCGCCAGGGGCGGCATGCCCAGGAAGATGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGGTT‑GCGTTGCAACCCTTCGCGGGCTTGCATGCGAAg < 2:276062/149‑1 (MQ=39) gtgATGGTGAATGGGCAATGGGTGGTGCGCCAGGGGCGGCATGCCCAGGAAGATGAAAGCGGGCGGGTGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGGTT‑GCGTTGCAACCCTTCGCGGGCTTGCACGCGAAg < 2:6388/148‑1 (MQ=39) aTGGTGAATGGGCAATGGGTGGTGCGCCAGGGGCGGCATGCCCAGGAAGATGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGGTT‑GCGTTGCAGCCCTTCGCGTGCAAGCCCGCGAAGGGtt < 3:254551/149‑1 (MQ=255) aTGGTGAATGGGCAATGGGTGGTGCGCCAGGGGCGGCATGCCCAGGAAGATGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGGTT‑GCGTTGCAGCCCTTCGCGTGCAAGCCCGCGAAGGGt < 6:123274/148‑1 (MQ=255) aTGGTGAATGGGCAATGGGTGGTGCGCCAGGGGCGGCATGCCCAGGAAGATGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGGTT‑GCGTTGCAACCCTTCGCGGGCTTGCACGCGAAgggc < 2:98698/148‑2 (MQ=38) tGGTGAATGGGCAATGGGGGGTGCGCCAGGGGCGGCATGCCCAGGAAGATGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGGTT‑GCGTTGCAACCCTTCGCGGGCTTGCACGCGAAGGGCTg < 6:290079/149‑1 (MQ=38) gggCAATGGGTGGTGCGCCAGGGGCGGCATGCCCAGGAAGATGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGGTT‑GCGTTGCAGCCCTTCGCGGGCTTGCACGCGAAg < 6:66378/136‑1 (MQ=255) gggCAATGGGTGGTGCGCCAGGGGCGGCATGCCCAGGAAGATGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGGTT‑GCGTTGCAGCCCTTCGCGGGCTTGCACGCGAAg > 5:66378/1‑136 (MQ=255) ggtgCGCCAGGGGCGGCATGCCCAGGAAGATGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGGTTGGCGTTGGGGCCCTAGGGGGGGACGCCCCGCACGGGTTGGACCGCCACCCCcaaaa > 1:125982/1‑148 (MQ=255) gcgcCTGGGGGGGCTTGCCAAGTATTATTATCGGGGGCGGGCTTTTCCAATGGTGTTGGGCAAGCTTTTGGTCTGTGTTTAGGGGGTTT‑GGGTTCCAGCCCTTGGCGTGCAAGCCGGCTATGGGTTCAAACGCAACCCCAAAAAACTCa < 4:139346/149‑1 (MQ=255) cAGGGGCGGCATGCCCAGGAAGATGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGGTT‑GCGTTGCAGCCCTTCGCGTGCAAGCCCGCGAAGGGTTg > 7:12027/1‑123 (MQ=255) cAGGGGCGGCATGCCCAGGAAGATGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGGTT‑GCGTTGCAGCCCTTCGCGTGCAAGCCCGCGAAGGGTTg < 8:12027/123‑1 (MQ=255) tGCCCAGGAATATGACAGCGGGCGGGCGTTTGCAAAGGTGTTGCGCCAGCTTTTGGGCTGCGCGTACCGGGGTT‑GCGTTGCAGCCCTTCGCGTGCAAGCCCGCTAAGGGTTGAAACGCAACCCCAAAAAACTCAGTGCATTTTTACTAt < 5:294683/149‑1 (MQ=255) aGGAAGATGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGGTT‑GCGTTGCAGCCCTTAGCGTGGAAGCCCGCGAAGGGTTTGAACGCAACCCCAAAAAAATCAGTGCATTTTTACTAttttgt > 5:61143/1‑146 (MQ=255) tGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGATTTTGGGCTGAGCGTACCGGGGTT‑GCGTTGCATCCCTTCGCTTGAAAGCCCGCTAAGGGTTGCAACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGa < 5:181877/149‑1 (MQ=255) gAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGGTT‑GCGTTGCAGCCCTTCGCGTGCAAGCCCGCGAAg < 5:210747/94‑1 (MQ=255) gAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGGTT‑GCGTTGCAGCCCTTCGCGTGCAAGCCCGCGAAg > 6:210747/1‑94 (MQ=255) gggcgggcGTTTGCCTAGGGGTTGCTCCTGCTTTTGGGCTGAGCTTACCGGGGTT‑GCGTTGCAGCCCTTCGCGTGCACGCCGGCGATGGGTTGAAACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGAcgcccgc < 6:126466/149‑1 (MQ=255) gcgTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGGTT‑GCGTTGCAACCCTTCGCGGGCTTGCACGCGAAggg < 1:127531/84‑1 (MQ=21) gcgTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGGTT‑GCGTTGCAACCCTTCGCGGGCTTGCACGCGAAggg > 2:127531/1‑84 (MQ=21) gTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGGTT‑GCGTTTCAGCCCTTAGCGTGCAAGCCCCCGAAGGGTTGGAACGCAACCCCAAAAAACAGAGGGGATTTTTAATATTTGCTGAAAGGACGCCCCCCCGATCaa > 6:158771/1‑149 (MQ=255) cAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGGTT‑GCGGTTCAGCCCATAGCGGGGAAGCCCGCGAACGGTTTGAACCCAAACCCCAAAAAAAAACGGCATTTTTTATATTTTGTGAAAGGCCCCCCGCCACAGAAAGCGGcg > 2:208472/1‑148 (MQ=255) aaGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGGTT‑GCGTTGCAGCCCTTCGCGTGCAAGCCCGCGAAGGGTTGCAACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTg < 1:208472/149‑1 (MQ=255) gtTGCGCCAGCTTTTGGGCTGAGCGTACCGNGGTT‑GCGTTGCAGCCCTTCGCGTGGAAGCCCGCGAAGGGTTGGGACGCAACCCCAAAAAACTCAGTGCATTTTTAGTATTTGGTGATGGGGCGCCCGCCCGATGAAGCGGgtggtgg > 1:27501/1‑147 (MQ=255) cgcCTGCTTTTGGGGTCCGCGACCCGGGGTG‑GCGTGGCAGCCTTCCGCGTCCACGCCCGATAAGGGTTCAAACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATAc < 2:325968/149‑1 (MQ=255) cgcCAGCTTTTGGGCTGAGCGTACCGGGGTT‑GCGTTGCAGCCCTTCGCGTGCAAGCCCGCGAAGGGTTGCAACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATAc < 2:100901/149‑1 (MQ=255) ccAGCTTTTGGGCTGAGCGTACCGGGGTT‑GCGTTGCAGCCCTTCGCGTGCAAGCCCGCGAAGGGTTGCAACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATAccc < 5:158771/149‑1 (MQ=255) gTACCGGGGTT‑GCGTTGCAGCCCTTCGCGTGCAAGCCCGCGAAGGGTTGCAACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGa < 8:208215/149‑1 (MQ=255) tt‑gcgttgcAGCCCTTCGCGTGCAAGCCCGCGAAGGGTTGCAACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGtt > 5:78056/1‑149 (MQ=255) gttgcAGCCCTTCGCGTGCAAGCCCGCGAAGGGTTGCAACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTTCTCa < 6:78056/149‑1 (MQ=255) gttgcAACCCTTCGCGGGCTTGCACGCGAAGGGCTGCAACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTTCTCa > 7:137137/1‑149 (MQ=38) gttgcAACCCTTCGCGGGCTTGCACGCGAAGGGCTGCAACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTTCTCa > 6:187726/1‑149 (MQ=38) ttgcAGCCCTTCGCGTGCAAGCCCGCGAAGGGTTGCAACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTTCTCAc > 4:174085/1‑149 (MQ=255) gcAGCCCTTCGCGTGCAAGCCCGCGAAGGGTTGCAACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGAcag > 3:312109/1‑136 (MQ=255) gcAGCCCTTCGCGTGCAAGCCCGCGAAGGGTTGCAACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGAcag < 4:312109/136‑1 (MQ=255) caacccTTCGCGGGCTTGCACGCGAAGGGTTGCAACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTTCTCAc < 2:214526/143‑1 (MQ=39) caacccTTCGCGGGCTTGCACGCGAAGGGTTGCAACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTTCTCAc > 1:214526/4‑146 (MQ=39) aacccTTCGCGGGCTTGCACGCGAAGGGCTGCAACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGa > 5:165934/3‑91 (MQ=21) aacccTTCGCGGGCTTGCACGCGAAGGGCTGCAACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGa < 6:165934/89‑1 (MQ=21) aGCCCTTCGCGTGCAAGCCCGCGAAGGGTTGCAACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAgg < 5:206733/138‑1 (MQ=255) aGCCCTTCGCGTGCAAGCCCGCGAAGGGTTGCAACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAgg > 6:206733/1‑138 (MQ=255) aGCCCTTCGCGTGCAAGCCCGCGAAGGGTTGCAACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTTCTCACGCTc > 6:13583/1‑149 (MQ=255) gCCCTTCGCGTGCAAGCCCGCTATGGGTTGAAACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTTCTCACGCTcc < 1:324200/149‑1 (MQ=255) cccTTCGCGTGCAAGCCCGCGAAGGGTTGCAACGCCACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCTGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTTCTCACGCGcc > 6:39569/1‑148 (MQ=255) cccTTCGCGTGCAAGCCCGCGAAGGGTTGCAACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTg > 4:296459/1‑127 (MQ=255) cccTTCGCGTGCAAGCCCGCGAAGGGTTGCAACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTg < 3:296459/127‑1 (MQ=255) cTTCGCGGGCTTGCACGCGAAGGGCTGCAACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTTCTCACGCTCCCAg < 8:137137/149‑1 (MQ=39) cgTGCATCCCCGCTATGGGTTCAAACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTTCTCACGCTCCCAGGCCgg < 4:175931/149‑1 (MQ=255) gCAAGCCCGCGAAGGGTTGCAACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTTCTCACGCTCCCAGGCCGGCAg > 6:74912/1‑149 (MQ=255) gCAAGCCCGCGAAGGGTTGCAACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTTCTCACGCTCCCAGGCCGGCAg > 5:123401/1‑149 (MQ=255) aaGCCCGCGAAGGGTTGCAACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCctgctg > 7:302256/1‑105 (MQ=255) aaGCCCGCGAAGGGTTGCAACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCctgctg < 8:302256/105‑1 (MQ=255) aaGCCCGCGAAGGGTTGCAACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTTCTCACGCTCCCAGGCCGGCa > 5:71257/1‑146 (MQ=255) aaGCCCGCGAAGGGTTGCAACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTTCTCACGCTCCCAGGCCGGCa < 6:71257/146‑1 (MQ=255) | ATGTGATGGTGAATGGGCAATGGGTGGTGCGCCAGGGGCGGCATGCCCAGGAAGATGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGGTT‑GCGTTGCAGCCCTTCGCGTGCAAGCCCGCGAAGGGTTGCAACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTTCTCACGCTCCCAGGCCGGCAG > NC_002947/5740332‑5740616 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |