Predicted mutation
evidence	seq id	position	mutation	freq	annotation	gene	description
RA	NC_002947	6,040,794	T→A	7.2%	intergenic (+19/+15)	PP_5292 → / ← PP_5293	catabolite repression control protein/hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_002947	6,040,794	0	T	A	7.2%	202.1 / 3.8	69	intergenic (+19/+15)	PP_5292/PP_5293	catabolite repression control protein/hypothetical protein
Reads supporting (aligned to +/- strand):  ref base T (31/33);  new base A (2/3);  total (33/36)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

TCGGTTCGACTACCAGATCCTCACCCCGGGCCTGCGCCGCTTCGTGCGCAACGC‑TCGCCTGCCGCGTCAGCCACGCTTCTCCCAGCATGCACCGCTGATCGTCGACTATGACTGGACGCTGACCATCTAAAAGGCCATTGGGGCTGCATTGCAGCCCC‑AATGGTTATTTGATCGGCCGCCAGATCATCGGGTAGCGATAAGGCTTGCCCTCATTCGCCCGCACCGCCGCGATGATGATCAATATCATCACTGCCACCGTGAGCATGGCAAACAGCACCAGCCCGATAAAC  >  NC_002947/6040646‑6040935                                                                                                                                                      |                                                                                                                                               tCGGTTCGACTACCAGATCCTCACCCCGGGCCTGCGCCGCTTCGTGCGCAACGC‑TCGCCTGCCGCGTCAGCCACGCTTCTCCCAGCATGCACCGCTGATCGTCGACTATGACTGGACGCTGACCATCTAAAAGGCCATTGGGGCTGCAt                                                                                                                                                >  6:233031/1‑149 (MQ=255)   ggTTCGACTACCAGATCCTCACCCCGGGCCTGCGCCGCTTCGTGCGCAACGC‑TCGCCTGCCGCGTCAGCCACGCTTCTCCCAGCATGCACCGCTGATCGTCGACTATGACTGGACGCTGACCATCTAAAAGGCCATTGGGGCTGCAtt                                                                                                                                               <  4:25607/148‑1 (MQ=255)   ggTTCGACTACCAGATCCTCACCCCGGGCCTGCGCCGATTCGTGCGCAACGC‑TCGCCTGCCGCGTCAGCCACGCTTCTCCAAGCATGCACCGCTGATCGTCGACTATGACTGGACGCTGACCATCTAAAAGGCCATTGGGGCTGCATTg                                                                                                                                              <  3:255033/149‑1 (MQ=255)    gTTCGACTACCAGATCCTCACCCCGGGCCTGCGCCGCTTCGTGCGCAACGC‑TCGCCTGCCGCGTCAGCCACGCTTCTCCCAGCATGCACCGCTGATCGTCGACTATGACTGGACGCTGACCATCTAAAAGGCCATTGGGGCTGCATTg                                                                                                                                              >  6:4128/1‑148 (MQ=255)       cGACTACCAGATCCTCACCCCGGGCCTGCGCCGCTTCGTGCGCAACGC‑TCGCCTGCCGCGTCAGCCACGCTTCTCCCAGCATGCACCGCTGATCGTCGACTATGACTGGACGCTGACCATCTAAAAGGCCATTGGGGCTGCATTGCAg                                                                                                                                           <  1:243058/148‑1 (MQ=255)         aCTACCAGATCCTCACCCCGGGCCTGCGCCGCTTCGTGCGCAACGC‑TCGCCTGCCGCGTCAGCCACGCTTCTCCCAGCATGCACCGCTGATCGTCGACTATGACTGGACGCTGACCATCTAAAAGGCCATTGGGGCTGCAATGCAGccc                                                                                                                                        <  5:101037/149‑1 (MQ=255)           tACCAGATCCTCACCCCGGGCCTGCGCCGCTTCGTGCGCAACGC‑TCGCCTGCCGCGTCAGCCACGCTTCTCCCAGCATGCACCGCTGATCGTCGACTATGACTGGACGCTGACCATCTAAAAGGCCATTGGGGCTGCATTGc                                                                                                                                             <  3:184357/142‑1 (MQ=255)           tACCAGATCCTCACCCCGGGCCTGCGCCGCTTCGTGCGCAACGC‑TCGCCTGCCGCGTCAGCCACGCTTCTCCCAGCATGCACCGCTGATCGTCGACTATGACTGGACGCTGACCATCTAAAAGGCCATTGGGGCTGCATTGc                                                                                                                                             >  4:184357/1‑142 (MQ=255)             ccAGATCCTCACCCCGTGCCTGCGCCGCTTCGTGCGCAACGC‑TCGCCTGCCGCGTCAGCCACGCTTCTCCCAGCATGCACCGCTGATCGTCGACTATGACTGGACGCTGACCATCTAAAAGGCCATTGGGGCTGCAATGCAGCCCC‑AAt                                                                                                                                   <  7:297313/149‑1 (MQ=255)             ccAGATCCTCACCCCGGGCCTGCGCCGCTTCGTGCGCAACGC‑TCGCCTGCCGCGTCAGCCACGCTTCTCCCAGCATGCACCGCTGATCGTCGACTATGACTGGACGCTGACCATCTAAAAGGCCATTGGGGCTGCATTGCAGcccc                                                                                                                                       <  7:103413/146‑1 (MQ=255)             ccAGATCCTCACCCCGGGCCTGCGCCGCTTCGTGCGCAACGC‑TCGCCTGCCGCGTCAGCCACGCTTCTCCCAGCATGCACCGCTGATCGTCGACTATGACTGGACGCTGACCATCTAAAAGGCCATTGGGGCTGCATTGCAGcccc                                                                                                                                       >  8:103413/1‑146 (MQ=255)             ccAGATCCTCACCCCGGGCCTGCGCCGCTTCGTGCGCAACGC‑TCGCCTGCCGCGTCAGCCACGCTTCTCCCAGCATGCACCGCTGATCGTCGACTATGACTGGACGCTGACCATCTAAAAGGCCATTGGGGCTGCATTGCAGc                                                                                                                                          <  2:88380/143‑1 (MQ=255)             ccAGATCCTCACCCCGGGCCTGCGCCGCTTCGTGCGCAACGC‑TCGCCTGCCGCGTCAGCCACGCTTCTCCCAGCATGCACCGCTGATCGTCGACTATGACTGGACGCTGACCATCTAAAAGGCCATTGGGGCTGCATTGCAGc                                                                                                                                          >  1:88380/1‑143 (MQ=255)             ccAGATCCTCACCCCGGGCCTGCGCCGCTTCGTGCGCAACGC‑TCGCCTGCCGCGTCAGCCACGCTTCTCCCAGCATGCACCGCTGATCGTCGACTATGACTGGACGCTGACCATCTAAAAGGCCATTGGGGCTGCATTGCAGCCCC‑aa                                                                                                                                    <  5:4128/148‑1 (MQ=255)             ccAGATCCTCACCCCGGGCCTGCGCCGCTTCGTGCGCAACGC‑TCGCCTGCCGCGTCAGCCACGCTTCTCCCAGCATGCACCGCTGATCGTCGACTATGACTGGACGCTGACCATCTAAAAGGCCATTGGGGCTGCATTGCAGCCCC‑aa                                                                                                                                    <  6:24354/148‑1 (MQ=255)             ccAGATCCTCACCCCGGGCCTGCGCCGCTTCGTGCGCAACGC‑TCGCCTGCCGCGTCAGCCACGCTTCTCCCAGCATGCACCGCTGATCGTCGACTATGACTGGACGCTGACCATCTAAAAGGCCATTGGGGCTGCATTGCAGCCCC‑AAt                                                                                                                                   <  8:202783/149‑1 (MQ=255)             ccAGATCCTCACCCCGGGCCTGCGCCGCTTCGTGCGCAACGC‑TCGCCTGCCGCGTCAGCCACGCTTCTCCCAGCATGCACCGCTGATCGTCGACTATGACTGGACGCTGACCATCTAAAAGGCCATTGGGGCTGCATTGCAGCCCC‑AAt                                                                                                                                   >  3:52548/1‑149 (MQ=255)             ccAGATCCTCACCCCGGGCCTGCGCCGCTTCGTGCGCAACGC‑TCGCCTGCCGCGTCAGCCACGCTTCTCCCAGCATGCACCGCTGATCGTCGACTATGACTGGACGCTGACCATCTAAAAGGCCATTGGGGCTGCATTGCAGCCCC‑AAt                                                                                                                                   >  1:214125/1‑149 (MQ=255)             ccAGATCCTCACCCCGGGCCTGCGCCGCTTCGTGCGCAACGC‑TCGCCTGCCGCGTCAGCCACGCTTCTCCCAGCATGCACCGCTGATCGTCGACTATGACTGGACGCTGACCATCTAAAAGGCCATTGGGGCTGCATTGCAGCCCC‑AAt                                                                                                                                   >  7:202783/1‑149 (MQ=255)             ccAGATCCTCACCCCGGGCCTGCGCCGCTTCGTGCGCAACGC‑TCGCCTGCCGCGTCAGCCACGCTTCTCCCAGCATGCACCGCTGATCGTCGACTATGACTGGACGCTGACCATCTAAAAGACCATTGGGGCTGCAATGCAGCCCC‑AAt                                                                                                                                   >  7:243649/1‑149 (MQ=255)              cAGATCCTCACCCCGGGCCTGCGCCGCTTCGTGCGCAACGC‑TCGCCTGCCGCGTCAGCCACGCTTCTCCCAGCATGCACCGCTGATCGTCGACTATGACTGGACGCGGACCATCTAAAAGGCCATTGGGGCTGCATTGCAGCCCC‑AATg                                                                                                                                  >  7:260690/1‑149 (MQ=255)                 aTCCTCACCCCGGGCCTGCGCCGCTTCGTGCGCAACGC‑TCGCCTGCCGCGTCAGCCACGCTTCTCCCAGCATGCACCGCTGATCGTCGACTATGACTGGACGCTGACCATCTAAAAGGCCATTGGGGCTGCATTGCAGCCCC‑AATGGtt                                                                                                                               <  1:62508/149‑1 (MQ=255)                    cTCACCCCGGGCCTGCGCCGCTTCGTGCGCAACGC‑TCGCCTGCCGCGTCAGCCACGCTTCTCCCAGCATGCACCGCTGATCGTCGACTATGACTGGACGCTGACCATCTAAAAGGCCATTGGGGCTGCATTGCAGCCCC‑AATGGTTAtt                                                                                                                            <  8:260992/149‑1 (MQ=255)                    cTCACCCCGGGCCTGCGCCGCTTCGTGCGCAACGC‑TCGCCTGCCGCGTCAGCCACGCTTCTCCCAGCATGCACCGCTGATCGTCGACTATGACTGGACGCTGACCATCTAAAAGGCCATTGGGGCTGCATTGCAGCCCC‑AATGGTTAt                                                                                                                             <  1:199385/148‑1 (MQ=255)                     tCACCCCGGGCCTGCGCCGCTTCGTGCGCAACGC‑TCGCCTGCCGCGTCAGCCACGCTTCTCCCAGCATGCACCGCTGATCGTCGACTATGACTGGACGCTGACCATCTAAAAGGCCATTGGGGCTGCATTGCa                                                                                                                                            <  3:4984/133‑1 (MQ=255)                     tCACCCCGGGCCTGCGCCGCTTCGTGCGCAACGC‑TCGCCTGCCGCGTCAGCCACGCTTCTCCCAGCATGCACCGCTGATCGTCGACTATGACTGGACGCTGACCATCTAAAAGGCCATTGGGGCTGCATTGCa                                                                                                                                            >  4:4984/1‑133 (MQ=255)                     tCACCCCGGGCCTGCGCCGCTTCGTGCGCAACGC‑TCGCCTGCCGCGTCAGCCACGCTTCTCCCAGCATGCACCGCTGATCGTCGACTATGACTGGACGCTGACCATCTAAAAGGCCATTGGGGCTGCATTGCAGCCCC‑AATGGTTAttt                                                                                                                           >  6:219220/1‑149 (MQ=255)                     tCACCCCGGGCCTGCGCCGCTTCGTGCGCAACGC‑TCGCCTGCCGCGTCAGCCACGCTTCTCCCAGCATGCACCGCTGATCGTCGACTATGACTGGACGCTGACCATCTAAAAGGCCATTGGGGCTGCATTGCAGCCCC‑AATGGTTAttt                                                                                                                           >  1:222610/1‑149 (MQ=255)                       aCCCCGGGCCTGCGCCGCTTCGTGCGCAACGC‑TCGCCTGCCGCGTCAGCCACGCTTCTCCCAGCATGCACCGCTGATCGTCGACTATGACTGGACGCTGACCATCTAAAAGACCATTGGGGCTGCAATGCAGCCCC‑AATggcctttt                                                                                                                           <  8:243649/147‑7 (MQ=255)                         cccGGGCCTGCGCCGCTTCGTGCGCAACGCGTCGCCTGCCGCGTCAGCCACGCTTCTCCCAGCATGCACCGCTGAGCGTCGACTATGACTGGACGCTGACCATCTAAAAGGCCATTGGGGCTGCATTGCAGCCCC‑AATGGTTATTTGAt                                                                                                                        >  1:31180/1‑149 (MQ=255)                         cccGGGCCTGCGCCGCTTCGTGCGCAACGC‑TCGCCTGCCGCGTCAGCCACGCTTCTCCCAGCATGCACCGCTGATCGTCGACTATGACTGGACGCTGACCATCTAAAAGGCCATTGGGGCTGCATTGCAGCCCC‑AATGGTTATTTGATc                                                                                                                       <  5:15609/149‑1 (MQ=255)                                   cgccgcTTCGTGCGCAACTC‑TCGCCTGCCGCGTCAGCCACGCTTCTCCCAGCATGCACCGCTGATCGTCGACTATGACTGGACGCTGACCATCTAAAAGGCCATTGGGGCTGCATTGCAGCCCC‑AATGGTTATTTGATCGGCCGCCa                                                                                                               <  4:52548/147‑1 (MQ=255)                                        cTTCGTGCGCAACGC‑TCGCCTGCCGCGTCAGCCACGCTTCTCCCAGCATGCACCGCTGATCGTCGACTATGACTGGACGCTGACCATCTAAAAGGCCATTGGGGCTGCATTGCAGCCCC‑AATGGTTATTTGATCGGCCGCCAGatcatc                                                                                                        <  1:229688/149‑1 (MQ=255)                                           cGTGCGCAACGC‑TCGCCTGCCGCGTCAGCCACGCTTCTCCCAGCATGCACCGCTGATCGTCGACTATGACTGGACGCTGACCATCTAAAAGGCCATTGGGGCTGCATTGCAGCCCC‑AATGGTTATTTGATCGGCCGCCAGATCATCgg                                                                                                      <  2:31180/148‑1 (MQ=255)                                             tGCGCAACGC‑TCGCCTGCCGCGTCAGCCACGCTTCTCCCAGCATGCACCGCTGATCGTCGACTATGACTGGACGCTGACCATCTAAAAGGCCATTGGGGCTGCATTGCAGCCCC‑AATGGTTATTTGATCGGCCGCCAGATCATCGGGTa                                                                                                   <  1:163138/149‑1 (MQ=255)                                                    cGC‑TCGCCTGCCGCGTCAGCCACGCTTCTCCCAGCATGCACCGCTGATCGTCGACTATGACTGGACGCTGACCATCTAAAAGGCCATTGGGGCTGCATTGCAGCCCC‑AATGGTTATTTGATCGGCCGCCAGATCATCGGGTAGCGATaa                                                                                            <  1:22312/149‑1 (MQ=255)                                                          gCCTGCCGCGTCAGCCACGCTTCTCCCAGCATGCACCGCTGGTCGTCGACTATGACTGGACGCTGACCATCTAAAAGGCCATTGGGGCTGCATTGCAGCCCC‑AATGGTTATTTGATCGGCCGCCAGATCATCGGGTAGCGATAAGGCtt                                                                                       >  4:35302/1‑149 (MQ=255)                                                            cTGCCGCGTCAGCCACGCTTCTCCCAGCATGCACCGCTGATCGTCGACTATGACTGGACGCTGACCATCTAAAAGGCCATTGGGGCTGCAtt                                                                                                                                               <  6:282705/92‑1 (MQ=255)                                                            cTGCCGCGTCAGCCACGCTTCTCCCAGCATGCACCGCTGATCGTCGACTATGACTGGACGCTGACCATCTAAAAGGCCATTGGGGCTGCAtt                                                                                                                                               >  5:282705/1‑92 (MQ=255)                                                            cTGCCGCGTCAGCCACGCTTCTCCCAGCATGCACCGCTGATCGTCGACTATGACTGGACGCTGACCATCTAAAAGGCCATTGGGGCTGCATTGCAGCCCC‑AATGGTTATTTGATCGGCCGCCAGATCATCGGGTAGCGATAAGGCTTGc                                                                                     <  5:250534/149‑1 (MQ=255)                                                                   gTCAGCCACGCTTCTCCCAGCATGCACCGCTGATCGTCGACTATGACTGGACGCTGACCATCTAAAAGGCCATTGGGGCTGCATTGCAGCCCC‑AATGGTTATTTGATCGGCCGCCAGATCATCGGGTAGCGATAAGGCTTGCCCTCAt                                                                               >  4:167254/1‑148 (MQ=255)                                                                        ccACGCTTCTCCCAGCATGCACCGCTGATCGTCGACTATGACTGGACGCTGACCATCTAAAAGGCCATTGGGGCTGCATTGCAGCCCC‑AATGGTTATTTGATCGGCCGCCAGATCATCGGGTAGCGATAAGGCTTGCCCTCATTCGccc                                                                         >  4:37119/1‑149 (MQ=255)                                                                        ccACGCTTCTCCCAGCATGCACCGCTGATCGTCGACTATGACTGGACGCTGACCATCTAAAAGGCCATTGGGGCTGCATTGCAGCCCC‑AATGGTTATTTGATCGGCCGCCAGATCATCGGGTAGCGATAAGGCTTGCCCTCATTCGccc                                                                         <  5:219220/149‑1 (MQ=255)                                                                                    cAGCATGCACCGCTGATCGTCGACTATGACTGGACGCTGACCATCTAAAAGGCCATTGGGGCTGCATTGCAGCCCC‑AATGGTTATTTGATCGGCCGCCAGATCATCGGGTAGCGATAAGGCTTg                                                                                      <  1:173023/124‑1 (MQ=255)                                                                                    cAGCATGCACCGCTGATCGTCGACTATGACTGGACGCTGACCATCTAAAAGGCCATTGGGGCTGCATTGCAGCCCC‑AATGGTTATTTGATCGGCCGCCAGATCATCGGGTAGCGATAAGGCTTg                                                                                      >  2:173023/1‑124 (MQ=255)                                                                                           cACCGCTGATCGTCGACTATGACTGGACGCTGACCATCTAAAAGGCCATTGGGGCTGCATTGCAGCCCC‑AATGGTTATTTGATCGGCCGCCAGATCATCGGGTAGCGATAAGGCTTGCCCTCATTCGCCCGCACCGCCGCgatgatgat                                                      <  4:124122/149‑1 (MQ=255)                                                                                                   aTCGTCGACTATGACTGGACGCTGACCATCTAAAAGGCCATTGGGGCTGCATTGCAGCCCC‑AATGGTTATTTGATCGGCCGCCAGATCATCGGGTAGCGATAAGGCTTGCCCTCATTCGCCCGCACCGCCGCGATGATGATCAATatca                                              <  5:233031/149‑1 (MQ=255)                                                                                                   aTCGTCGACTATGACTGGACGCTGACCATCTAAAAGGCCATTGGGGCTGCATTGCAGCCCC‑AATGGTTATTTGATCGGCCGCCAGATCATCGGGTAGCGATAAGGCTTGCCCTCATTCGCCCGCACCGCCGCGATGATGATCAATatc                                               <  2:214125/148‑1 (MQ=255)                                                                                                   aTCGTCGACTATGACTGGACGCTGACCATCTAAAAGGCCATTGGGGCTGCATTGCAGCCCC‑AATGGTTATTTGATCGGCCGCCAGATCATCGGGTAGCGATAAGGCTTGCCCTCATTCGCCCGCACCGCCGCGATGATGATCAATatc                                               <  3:37119/148‑1 (MQ=255)                                                                                                     cgtcgACTATGACTGGACGCTGACCATCTAAAAGGCCATTGGGGCTGCATTGCAGCCCC‑AATGGTTATTTGATCGGCCGCCAGATCATCGGGTAGCGATAAGGCTTGCCCTCATTCGCCCGCACCGCCGCGATGATGATCAATatcatc                                            <  7:323067/149‑1 (MQ=255)                                                                                                     cgtcgACTATGACTGGACGCTGACCATCTAAAAGGCCATTGGGGCTGCATTGCAGCCCC‑AATGGTTATTTGATCGGCCGCCAGATCATCGGGTAGCGATAAGGCTTGCCCTCATTCGCCCGCACCGCCGCGATGATGATCAATatcat                                             >  8:114843/1‑148 (MQ=255)                                                                                                      gtcgACTATGACTGGACGCTGACCATCTAAAAGGCCATTGGGGCTGCATTGCAGCCCC‑AATGGTTATTTGATCGGCCGCCAGATCACCTGGTAGCGATAAGGCTTGCCCTCATTCGCCCGCACCGCCGCGATGATGATCAATAtcatca                                           >  5:76133/1‑149 (MQ=255)                                                                                                       tcgACTATGACTGGACGCTGACCATCTAAAAGGCCATTGGGGCTGCATTGCAGCCCC‑AATGGTTATTTGATCGGCCGCCAGATCATCGGGTAGCGATAAGGCTTGCCCTCATTCGCCCGCACCGCCGCGATGATGATCAATATCATCAc                                          >  8:205234/1‑149 (MQ=255)                                                                                                            tATGACTGGACGCTGACCATCTAAAAGGCCATTGGGGCTGCATTGCAGCCCC‑AATGGTTATTTGACCGGCCGCCAGATCATCggg                                                                                                     <  2:306039/85‑1 (MQ=255)                                                                                                            tATGACTGGACGCTGACCATCTAAAAGGCCATTGGGGCTGCATTGCAGCCCC‑AATGGTTATTTGACCGGCCGCCAGATCATCggg                                                                                                     >  1:306039/1‑85 (MQ=255)                                                                                                               gACTGGACGCTGACCATCTAAAAGGCCATTGGGGCTGCATTGCACCCCC‑AATGGTTATTTGATCGGCCGCCAGATAATCGGGTAGCGATAAGGCTTGCCCTAATTCGCCCGCCACGCCGCGATGATGATCAATATCATAACAGCCACCg                                  >  5:199671/1‑149 (MQ=255)                                                                                                                aCTGGACGCTGACCATCTAAAAGGCCATTGGGGCTGCATTGCAGCCCCAAATGGTTATTTGATCGGCCGCAAGAGAATCGGGTAGCGATAAGGATTGCCGTCATACGCCCGCACCGCCCCCATGATGAAAAATAACATAAATCCCACCg                                  >  1:81915/1‑149 (MQ=255)                                                                                                                aCTGGACGCTGACCATCTAAAAGGCCATTGGGGCTGCATTGCAGCCCC‑AATGGTTATTTGATCGGCCGCCAGATCATCGGGTAGCGATAAGGCTTGCCCTCATTCGCCCGCACCGCCGCGATGATGATCAATATCATCACTGCCACCGt                                 <  7:114843/149‑1 (MQ=255)                                                                                                                    gACGCTGACCATCTAAAAGGCCATTGGGGCTGCATTGCAGCCCC‑AATGGTTATTTGATCGGCCGCCAGATCATCGGGTAGCGATAAGGCTTGCCCTCATTCGCCCGCACCGCCGCGATGATGATCAATATCATCACTGCCACCGTGa                               <  2:222610/147‑1 (MQ=255)                                                                                                                       gCTGACCATCTAAAAGGCCATTGGGGCTGCATTGCAGCCCC‑AATGGTTATTTGATCGGCCGCCAGATCATCGGGTAGCGATAAGGCTTGCCCTCATTCGCCCGCACCGCCGCGATGATGATCAATATCATCACTGCCACCGTGAGCATg                          >  4:321311/1‑149 (MQ=255)                                                                                                                       gCTGACCATCTAAAAGGCCATTGGGGCTGCATTGCAGCCCC‑AATGGTTATTTGATCGGCCGCCAGATCATCGGGTAGCGATAAGGCTTGCCCTCATTCGCCCGCACCGCCGCGATGATGATCAATATCATCACTGCCACCGTGAGCATg                          >  6:344575/1‑149 (MQ=255)                                                                                                                          gACCATCTAAAAGGCCATTGGGGCTGCATTGCAGCCCC‑AATGGTTATTTGTTCGGCCGCCAGATCATCGGGTAGCGATAAGGCTTGCCCTCATTCGCCCGCACCGCCGCGATGATGATCAATATCATCACTGCCACCGTGAGCATGGc                        >  3:851/1‑148 (MQ=255)                                                                                                                            ccATCTAAAAGGCCATTGGGGCTGCATTGCAGCCCC‑AATGGTTATTTGATCGGCCGCCAGATCATCGGGTAGCGATAAGGCTTGCCCTCATTCGCCCGCACCGCCGCGATGATGATCAATATCATCACTGCCACCGTGAGCATGGCaaa                     >  7:164289/1‑149 (MQ=255)                                                                                                                             cATCTAAAAGGCCATTGGGGATGCATTGCAGACCC‑AATGGTTATTTGATCGGCAGCCAGATCATCGGGTAGCGATAAGGCTTGCCCTCATTCGACCGAACCGCCGCGATGATGATCAATATAATAACTGCCACCGTGAGCATGGCaaa                     >  8:181342/1‑148 (MQ=255)                                                                                                                               tCTAAAAGGCCATTGGGGCTGCATTGCAGCCCC‑AATGGTTATTTGATCGGCCGCCAGATCATCGGGTAGCGATAAGGCTTGCCCTCATTCGCCCGCACCGCCGCGATGATGATCAATATCATCACTGCCACCGTGAGCATGGCAAACAg                  >  5:206532/1‑149 (MQ=255)                                                                                                                                   taaGGCCTTTGGGGCTGCATTGCATCCCC‑AATGGTTATTTGATCGGCCGCCAGATCATCGGGTAGCGATAAGGCTTGCCCTCATTCGCCCGCACCGCCGCGATGATGATCAATATCATCACTGCCACCGTGAGCATGGCAAACAGCAc               <  6:199671/147‑1 (MQ=255)                                                                                                                                   aaaGGCCATTGGGGCTGCATTGCAGCCCC‑AATGGTTATTTGATCGGCCGCCAGATCATCGGGTAGCGATAAGGCTTGCCCTCATTCGCCCGCACCGCCGCGATGATGATCAATATCATCACTGCCATCGTGAGCATGGCAAACAGCAc               <  3:167254/148‑1 (MQ=255)                                                                                                                                     aGGCCATTGGGGCTGCATTGCAGCCCC‑AATGGTTATTTGATCGGCCGCCAGATCATCGGGTAGCGATAAGGCTTGCCCTCATTCGCCCGCACCGCCGCGATGATGATCAATATCATCACTGCCACCGTGAGCATGGCAAACAGCACCAg            >  1:303074/1‑149 (MQ=255)                                                                                                                                       gCCATTGGGGCTGCATCGCAGCCCC‑AATGGTTATTTGATCGGCCGCCAGATCATCGGGTAGCGATAAGGCTTGCCCTCATTCGCCCGCACCGCCGCGATGATGATCAATATCATCACTGCCACCGt                                 <  7:95453/126‑1 (MQ=255)                                                                                                                                       gCCATTGGGGCTGCATCGCAGCCCC‑AATGGTTATTTGATCGGCCGCCAGATCATCGGGTAGCGATAAGGCTTGCCCTCATTCGCCCGCACCGCCGCGATGATGATCAATATCATCACTGCCACCGt                                 >  8:95453/1‑126 (MQ=255)                                                                                                                                         cATTGGGGCTGCATTGCAGCCCC‑AATGGTTATTTGATCGGCCGCCAGATCATCGGGTAGCGATAAGGCTTGCCCTCATTCGCCCGCACCGCCGCGATGATGATCAATATCATCACTGCCACCGTGAGCATGGCAAACAGCACCAGccc         >  6:332401/1‑148 (MQ=255)                                                                                                                                              gggCTGCAATGCAGCCCC‑AATGGTTATTTGATCGGCCGCCAGATCATCGGGTAGCGATAAGGCTTGCCCTCATTCGCCCGCACCGCCGCGATGATGATCAATATCATCACTGCCACCGTGAGCATGGCAAACAGCACCAGCCCGATaaa   >  6:107640/1‑149 (MQ=255)                                                                                                                                               ggCTGCATTGCAGCCCC‑AATGGTTATTTGATCGGCCGCCAGATCATCGGGTAGCGATAAGGCTTGCCCTCATTCGCCCGCACCGCCGCGATGATGATCAATATCATCACTGCCACCGTGAGCATGGCAAACAGCACCAGCCCGATAAac  <  7:205234/149‑1 (MQ=255)                                                                                                                                                      |                                                                                                                                               TCGGTTCGACTACCAGATCCTCACCCCGGGCCTGCGCCGCTTCGTGCGCAACGC‑TCGCCTGCCGCGTCAGCCACGCTTCTCCCAGCATGCACCGCTGATCGTCGACTATGACTGGACGCTGACCATCTAAAAGGCCATTGGGGCTGCATTGCAGCCCC‑AATGGTTATTTGATCGGCCGCCAGATCATCGGGTAGCGATAAGGCTTGCCCTCATTCGCCCGCACCGCCGCGATGATGATCAATATCATCACTGCCACCGTGAGCATGGCAAACAGCACCAGCCCGATAAAC  >  NC_002947/6040646‑6040935

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑