| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 6,129,170 | C→T | 13.1% | intergenic (+32/+35) | PP_5376 → / ← PP_5377 | hypothetical protein/hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 6,129,170 | 0 | C | T | 13.1% | 210.8 / 19.0 | 84 | intergenic (+32/+35) | PP_5376/PP_5377 | hypothetical protein/hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base C (33/39); new base T (6/5); total (39/45) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.48e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.41e-01 | |||||||||||
GGGGAAGCTGTGACGTGATGCCTGCGCAAATGACCTATGAAGACTCGACAGGCAAGCTCAACATTCTCGAATACCGCGCAGCTGGCATCAATTGCCGCGGCCAAAATTGAGCTCTGAATGCTGTCCAAACGAAAACGGCGCCTTAAAAGCG‑CCGTTTGCGTTGGGAAAACGGTGGGTCAGTGGCCTGGATACTCTGCAACCACTTCATCCCGTCCGCTCTTGTTGAGACCGATGACCTGGTATGCATGAGAGACACCATCCACTTCCATACCTGGAGAGCCTGCCGGCAT > NC_002947/6129029‑6129318 | ggggAAGCTGTGACGTGATGCCTGCGCAAATGACCTATGAAGACTCGACAGGCAAGCTCAACATTCTCGAATACCGCGCAGCTGGAATCAATTGCCGCGGCCAAAATTGAGCTCTGAATGCTGTCCAAACGAAAACGGCGCCTTAAAAg > 3:167215/1‑149 (MQ=255) gggAAGCTGTGACGTGATGCCTGCGCAAATGACCTATGAAGACTCGACAGGCAAGCTCAACATTCTCGAATACCGCGCAGCTGGCATCAATTGCCGCGGCCAAAATTGAGCTCTGAATGCTGTCCAAACGAAAACGGCGCCTTAAAAgc > 2:326119/1‑149 (MQ=255) gggAAGCTGTGACGTGATGCCTGCGCAAATGACCTATGAAGACTCGACAGGCAAGCTCAACATTCTCGAATACCGCGCAGCTGGCATCAATTGCCGCGGCCAAAATTGAGCTCTGAATGCTGTCCAAACGAAAACGGCGCCTTAAAAgc > 6:345066/1‑149 (MQ=255) gAAGCTGTGACGTGATGCCTGCGCAAATGACCTATGAAGACTCGACAGGCAAGCTCAACATTCTCGAATACCGCGCAGCTGGCATCAATTGCCGCGGCCAAAATTGAGCTCTGAATGCTGTCCAAACGAAAACGGCGCCTTAAAAgcg‑c > 5:348611/1‑149 (MQ=255) aGCTGTGACGTGATGCCTGCGCAAATGACCTATGAAGACTCGACAGGCAAGCTCAACATTCTCGAATACCGCGCAGCTGGCATCAATTGCCGCGGCCAAAATTGAGCTCTGAATGCTGTCCAAACGAAAACGGCGCTTTTAAGGCG‑CCg < 1:84968/149‑1 (MQ=255) gtgACGTGATGCCTGCGCAAATGACCTATGAAGACTCGACAGGCAAGCTCAACATTCTCGAATACCGCGCAGCTGGCATCAATTGCCGCGGCCAAAATTGAGCTCTGAATGCTGTCCAAACGAAAACGGCGCCTTAAAAGCG‑CCGTTTg > 1:179979/1‑149 (MQ=255) tgACGTGATGCCTGCGCAAATGACCTATGAAGACTCGACAGGCAAGCTCAACATTCTCGAATACCGCGCAGCTGGCATCAATTGCCGCGGCCAAAATTGAGCTCTGAATGCTGTCCCAACGCAAACGGCGCTTTTAAGGCG‑CCGttttc < 6:264994/149‑3 (MQ=39) cgACGTGATCCCTGCGCAAATGACCTATGAAGACTCGACAGGCAAGCTCAACATTCTCGAATACCGCGCAGCTGGCATCAATTGCCGCGGCCAAAATTGAGCTCTGAATGCTGTCCAAACGAAAACGGCGCCTTAAAAGCG‑CCGttt < 4:11358/146‑1 (MQ=255) cGTGATGCCTGCGCAAATGACCTATGAAGACTCGACAGGCAAGCTCAACATTCTCGAATACCGCGCAGCTGGCATCAATTGCCGCGGCCAAAATTGAGCTCTGAATGCTGTCCAAACGAAAACGGCGCCTTAAAAGCG‑CCGTTTGCGtt > 2:9670/1‑149 (MQ=255) cGTGATGCCTGCGCAAATGACCTATGAAGACTCGACAGGCAAGCTCAACATTCTCGAATACCGCGCAGCTGGCATCAATTGCCGCGGCCAAAATTGAGCTCTGAATGCTGTCCAAACGAAAACGGCGCCTTAAAAGCG‑CCGTTTGCGtt < 8:101131/149‑1 (MQ=255) tGATGCCTGCGCAAATGACCTATGAAGACTCGACAGGCAAGCTCAACATTCTCGAATACCGCGCAGCTGGCATCAATTGCCGCGGCCAAAATTGAGCTCTGAATGCTGTCCAAACGAAAACGGCGCCTTAAAAGCG‑CCGTTTGCGTTgg < 6:63334/149‑1 (MQ=255) gATGCCTGCGCAAATGACCTATGAAGACTCGACAGGCAAGCTCAACATTCTCGAATACCGCGCAGCTGGCATCAATTGCCGCGGCCAAAATTGAGCTCTGAATGCTGTCCAAACGAAAACGGCGCCTTAAAAGCG‑CCGTTTGCGTTgg > 2:208255/1‑148 (MQ=255) gcAAATGACCTATGAAGACTCGACAGGCAAGCTCAACATTCTCGAATACCGCGCAGCTGGCATCAATTGCCGCGGCCAAAATTGAGCTCTGAATGCTGTCCAAACGAAAACGGCGCCTTAAAAGCG‑CCGTTTGCGTTGGGAAAACGGTg > 4:236139/1‑149 (MQ=255) gcAAATGACCTATGAAGACTCGACAGGCAAGCTCAACATTCTCGAATACCGCGCAGCTGGCATCAATTGCCGCGGCC‑AAATTGAGCTCTGAATGCTGTCCAAACGAAAACGGCGCCTTAAAAGCG‑CCGTTTGCGTTGGGAAAACGGTgg < 5:219208/149‑1 (MQ=255) aaaTGACCTATGAAGACTCGACAGGCAAGCTCAACATTCTCGAATACCGCGCAGCTGGCATCAATTGCCGCGGCCAAAATTGAGCTCTGAATGCTGTCCAAACGAAAACGGCGCCTTAAAAGCGCCCGTTTGCGTTGGGAAAACGGTgg < 7:213247/149‑1 (MQ=255) aaaTGACCTATGAAGACTCGACAGGCAAGCTCAACATTCTCGAATACCGCGCAGCTGGCATCAATTGCCGCGGCCAAAATTGAGCTCTGAATGCTGTCCAAACGAAAACGGCGCCTTAAAAGCG‑cc < 6:31066/126‑1 (MQ=255) aTGACCTATGAAGACTCGACAGGCAAGCTCAACATTCTCGAATACCGCGCAGCTGGCATCAATTGCCGCGGCCAAAATTGAGCTCTGAATGCTGTCCAAACGAAAACGGCGCCTTAAAAGCG‑CCGTTTGCGTTGGGAAAACGGTGGGt > 3:242279/1‑148 (MQ=255) tGACCTATGAAGACTCGACAGGCAAGCTCAACATTCTCGAATACCGCGCAGCTGGCATCAATTGCCGCGGCCAAAATTGAGCTCTGAATGCTGTCCAAACGAAAACGGCGCCTTAAAAGCG‑CCGTTTGCGTTGGGAAAACGGTGGGTCa < 6:348611/149‑1 (MQ=255) aCCTATGAAGACTCGACAGGCAAGCTCAACATTCTCGAATACCGCGCAGCTGGCATCAATTGCCGCGGCCAAAATTGAGCTCTGAATGCTGTCCAAACGAAAACGGCGCCTTAAAAGCG‑CCGTTTGCGTTGGGAAAACGGTGGGTCAGt < 1:162639/149‑1 (MQ=255) cTATGAAGACTCGACAGGCAAGCTCAACATTCTCGAATACCGCGCAGCTGGCATCAATTGCCGCGGCCAAAATTGAGCTCTGAATGCTGTCCAAACGAAAACGGCGCCTTAAAAGCG‑CCGTTTGCGTTGGGAAAACGGTGGGTCAGTgg < 5:222187/149‑1 (MQ=255) tGAAGACTCGACAGGCAAGCTCAACATTCTCGAATACCGCGCAGCTGGCATCAATTGCCGCGGCCAAAATTGAGCTCTGAATGCTGTCCAAACGAAAACGGCGCCTTAAAAGCG‑CCGTTTGCGTTGGGAAAACGGTGGGTCAGTGGCCt > 7:35421/1‑149 (MQ=255) tGAAGACTCGACAGGCAAGCTCAACATTCTCGAATACCGCGCAGCTGGCATCAATTGCCGCGGCCAAAATTGAGCTCTGAATGCTGTCCAAACGAAAACGGCGCCGTAAAAGCG‑CCGTTTGCGTTGGGAAAACGGTGGGGCAGTGGc < 8:236288/147‑1 (MQ=255) gAAGACTCGACAGGCAAGCTCAACATTCTCGAATACCGCGCAGCTGGCATCAATTGCCGCGGCCAAAATTGAGCTCTGAATGCTGTCCAAACGAAAACGGCGCCTTAAAAgcg‑c > 7:112141/1‑114 (MQ=255) gAAGACTCGACAGGCAAGCTCAACATTCTCGAATACCGCGCAGCTGGCATCAATTGCCGCGGCCAAAATTGAGCTCTGAATGCTGTCCAAACGAAAACGGCGCCTTAAAAgcg‑c < 8:112141/114‑1 (MQ=255) aGACTCGACAGGCAAGCTATACATTATCGAATACCGCGCAGCTTGAATCAATTGCCGCGGCCAAAATTGAGCTCTGAATGCTGTCCAAACGAAAACGGCGCCTTAAAAGCG‑CCGTTTGCGTTGGGAAAACGGTGGGTCAGTGGCCTGGa < 4:167215/149‑1 (MQ=255) gACAGGTAAGCTCAACATTCTCGAATACCGCGCAGCTGGCATCAATTGCCGCGGCCAAAATTGAGCTCTGAATGCTGTCCAAACGAAAACGGCGCCTTAAAAGCG‑CCGTTTGCGTTGGGAAAACGGTGGGTCAGTGGCCTGGATActct > 3:135052/1‑149 (MQ=255) aGGCAAGCTCAACATTCTCGAATACCGCGCAGCTGGCATCAATTGCCGCGGCCAAAATTGAGCTCTGAATGCTGTCCAAACGCAAACGGCGCCTTAAAAGCG‑cc < 1:86607/104‑1 (MQ=255) aGGCAAGCTCAACATTCTCGAATACCGCGCAGCTGGCATCAATTGCCGCGGCCAAAATTGAGCTCTGAATGCTGTCCAAACGCAAACGGCGCCTTAAAAGCG‑cc > 2:86607/1‑104 (MQ=255) aGGCAAGCTCAACATTCTCGAATACCGCGCAGCTGGCATCAATTGCCGCGGCCAAAATTGAGCTCTGAATGCTGTCCAAACGAAAACGGCGCCTTAAAAGCG‑CCGTTTGCGTTGGGAAAACGGTGGGTCAGTGGCCTGGATACTCTGc > 6:249739/1‑148 (MQ=255) gCAAGCTCAACATTCTCGAATACCGCGCAGCTGGCATCAATTGCCGCGGCCAAAATTGAGCTCTGAATGCTGTCCAAACGAAAACGGCGCCTTAAAAGCG‑CCGTTTGCGTTggg < 2:228741/114‑1 (MQ=255) gCAAGCTCAACATTCTCGAATACCGCGCAGCTGGCATCAATTGCCGCGGCCAAAATTGAGCTCTGAATGCTGTCCAAACGAAAACGGCGCCTTAAAAGCG‑CCGTTTGCGTTggg > 1:228741/1‑114 (MQ=255) gCAAGCTCAACATTCTCGAATACCGCGCAGCTGGCATCAATTGCCGCGGCCAAAATTGAGCTCTGAATGCTGTCCAAACGAAAACGGCGCCTTAAAAGCG‑CCGTTTGCGTTGGGAAAACGGTGGGTCAGTGGCCTGGATACTCTGc > 1:334828/1‑146 (MQ=255) gCAAGCTCAACATTCTCGAATACCGCGCAGCTGGCATCAATTGCCGCGGCCAAAATTGAGCTCTGAATGCTGTCCAAACGAAAACGGCGCCTTAAAAGCG‑CCGTTTGCGTTGGGAAAACGGTGGGTCAGTGGCCTGGATACTCTGc < 2:334828/146‑1 (MQ=255) cAAGCTCAACATTCTCGAATACCGCGCAGCTGGCATCAATTGCCGCGGCCAAAATTGAGCTCTGAATGCTGTCCAAACGAAAACGGCGCCTTAAAAGCG‑CCGTTTGCGTTGGGAAAACGGTGGGTCAGTGGCCTGGATACTCTGCAAc > 1:84377/1‑148 (MQ=255) aaCATTCTCGAATACCGCGCAGCTGGCATCAATTGCCGCGGCCAAAATTGAGCTCTGAATGCTGTCCAAACGAAAACGGCGCCTTAAAAGCG‑CCGTTTGCGTTGGGAAAACGGt < 4:130779/114‑1 (MQ=255) aaCATTCTCGAATACCGCGCAGCTGGCATCAATTGCCGCGGCCAAAATTGAGCTCTGAATGCTGTCCAAACGAAAACGGCGCCTTAAAAGCG‑CCGTTTGCGTTGGGAAAACGGt > 3:130779/1‑114 (MQ=255) aaCATTCTCGAATACCGCGCAGCTGGCATCAATTGCCGCGGCCAAAATTGAGCTCTGAATGCTGTCCAAACGAAAACGGCGCCTTAAAAGCG‑CCGTTTGCGTTGGGAAAACGGTGGGTCAGTGGCCTGGCTACTCTGCCACGACTTCAt > 6:242898/1‑149 (MQ=255) aaCATTCTCGAATACCGCGCAGCTGGCATCAATTGCCGCGGCCAAAATTGAGCTCTGAATGCTGTCCAAACGAAAACGGCGCCTTAAAAGCG‑CCGTTTGCGTTGGGAAAACGGTGGGTCAGTGGCCTGGATACTCTGCAACCACTTCAt > 1:168358/1‑149 (MQ=255) aaCATTCTCGAATACCGCGCAGCTGGCATCAATTGCCGCGGCCAAAATTGAGCTCTGAATGCTGTCCAAACGAAAACGGCGCCTTAAAAGCG‑CCGTTTGCGTTGGGAAAACGGTGGGTCAGTGGCCTGGATACTCTGCAACCACTTCAt < 6:95607/149‑1 (MQ=255) aaCATTCTCGAATACCGCGCAGCTGGCATCAATTGCCGCGGCCAAAATTGAGCTCTGAATGCTGTCCAAACGAAAACGGCGCCTTAAAAGCG‑CCGTTTGCGTTGGGAAAACGGTGGGTCAGTGGCCTGGATACTCTGCAACCACTTCAt > 6:273418/1‑149 (MQ=255) aCATTCTCGAATACCGCGCAGCTGGCATCAATTGCCGCGGCCAAAATTGAGCTCTGAATGCTGTCCAAACGAAAACGGCGCCTTAAAAGCG‑CCGTTTGCGTTGGGAAAACGGTGGGTCAGTGGCCTGGATACTCTGCAACCACTTCATc < 5:273418/149‑1 (MQ=255) aCATTCTCGAATACCGCGCAGCTGGCATCAATTGCCGCGGCCAAAATTGAGCTCTGAATGCTGTCCAAACGAAAACGGCGCCTTAAAAGCG‑CCGTTTGCGTTGGGAAAACGGTGGGTCAGTGGCCTGGATACTCTGCAACCACTTCATc < 1:326119/149‑1 (MQ=255) aCATTCTCGAATACCGCGCAGCTGGCATCAATTGCCGCGGCCAAAATTGAGCTCTGAATGCTGTCCAAACG‑AAACGGCGCCTTAAAAGCG‑CCGTTTGCGTTGGGAAAACGGTGGGTCAGTGGCCTGGATACTCTGCAACCACTTCATcc > 7:281893/1‑149 (MQ=255) aCAATCTCGAATACCGCGCAGCTGGCATCAATTGCCGCGGCCAAAATTGAGCTCTGAATGCTGTCCAAACGAAAACGGCGCCTTAAAAGCG‑CCGTTTGCGTTGGGAAAACGGTGGGGCAGTGGCCTGGATACTCTGCAACCACTTCATc < 4:180766/149‑1 (MQ=255) gAATACCGCGCAGCTGGCATCAATTGCCGCGGCCAAAATTGAGCTCTGAATGCTGTCCAAACGAAAACGGCGCCTTAAAAGCG‑CCGTTTGCGTTGGGAAAACGGTGGGTCAGTGGCCTGGATACTCTGCAACCACTTCATCCCGTCCGc > 2:94641/1‑149 (MQ=255) ccGCGCAGCTGGCATCAATTGCCGCGGCCAAAATTGAGCTCTGAATGCTGTCCAAACGAAAACGGCGCCTTAAAAGCG‑CCGTTTGCGTTGGGAAAACGGTGGGTCAGTGGCCTGGATACTCTGCAACCACTTCATCCCGTCCGCTCttg < 1:208255/149‑1 (MQ=255) cgcgCAGCTGGCATCAATTGCCGCGGCCAAAATTGAGCTCTGAATGCTGTCCAAACGAAAACGGCGCCTTAAAAGCG‑CCGTTTGCGTTGGGAAAACGGTGGGTCAGTGGCCTGGATACTCTGCAACCACTTCATc < 2:162016/135‑1 (MQ=255) cgcgCAGCTGGCATCAATTGCCGCGGCCAAAATTGAGCTCTGAATGCTGTCCAAACGAAAACGGCGCCTTAAAAGCG‑CCGTTTGCGTTGGGAAAACGGTGGGTCAGTGGCCTGGATACTCTGCAACCACTTCATc > 1:162016/1‑135 (MQ=255) gcgcAGCTGGCATCAATTGCCGCGGCCAAAATTGAGCTCTGAATGCTGTCCAAACGAAAACGGCGCCTTAAAAGCG‑CCGTTTGCGTTGGGAAAACGGTGGGTCAGTGGCCTGGATACTCTGCAACCACTTCATCCCGTCCGCTCttgtt < 1:9670/149‑1 (MQ=255) gcAGCTGGCATCAATTGCCGCGGCCAAAATTGAGCTCTGAATGCTGTCCAAACGAAAACGGCGCCTTAAAAGCG‑CCGTTTGCGTTGGGAAAACGGTGGGTCAGTGGCCTGGATACTCTGCAACCACTTCATCCCGTCCGCTCttgtt < 5:222868/147‑1 (MQ=255) gcAGCTGGCATCAATTGCCGCGGCCAAAATTGAGCTCTGAATGCTGTCCAAAAGAAAACGGCGCCTTAAAAGCG‑CCGTTTGCGTTGGGAAAACGGTGGGTCAGTGGCCTGGATACTCTGCAACCACTTCATCCCGTCCGCTCttgtt > 6:222868/1‑147 (MQ=255) gCATCAATTGCCGCGGCCAAAATTGAGCTCTGAATGCTGTCCAAACGAAAACGGCGCCTTAAAAGCG‑CCGTTTGCGTTGGGAAAACGGTGGGTCAGTGGCCTGGATACTCTGCAACCACTTCATCCCGTCCGCTCTTGTTGAGACCg < 2:84377/147‑1 (MQ=255) gCATCAATTGCCGCGGCCAAAATTGAGCTCTGAATGCTGTCCAAACGAAAACGGCGCCTTAAAAGCG‑CCGTTTGCGTTGGGAAAACGGTGGGTCAGTGGCCTGGATACTCTGCAACCACTTCATCCCGTCCGCTCTTGTTGAGACCGa < 8:35421/148‑1 (MQ=255) gCATCAATTGCCGCGGCCAAAATTGAGCTCTGAATGCTGTCCAAACGAAAACGGCGCCTTAAAAGCG‑CCGTTTGCGTTGGGAAAACGGTGGGTCAGTGGCCTGGATACTCTGCAACCACTTCATCCCGTCCGCTCTTGTTGAGACCGAt < 5:249739/149‑1 (MQ=255) aTCAATTGCCGCGGACAAAATTGATCTCTGAATGCTGTCCAAAGGAAAAGGGCGCCTTAAAAGCG‑CCGTTTGCGTTGGGAAAACGGTGGGTCAGTGGCCTGGATACTCTGCAACCACTTCATCCCGTCCGCTCTTGTTGAGACCGATg < 7:148264/148‑1 (MQ=255) aaTTGCCGCGGCCAAAATTGAGCTCTGAATGCTGTCCAAACGCAAACGGCGCTTTTAAGGCG‑CCGTTTTCGt > 3:198847/1‑72 (MQ=21) aaTTGCCGCGGCCAAAATTGAGCTCTGAATGCTGTCCAAACGCAAACGGCGCTTTTAAGGCG‑CCGTTTTCGt < 4:198847/72‑1 (MQ=21) aTTGCCGCGGCCAAAATTGAGCTCTGAATGCTGTCCAAACGAAAACGGCGCCTTAAAAGCG‑CCGTTTGCGTTGGGAAAACGGTGGGTCAGTGGCCTGGATACTCTGAAACCACTTCATCCCGTCCGCTCTTGTTGAGACCGATGACCTg > 2:280953/1‑149 (MQ=255) aTTGCCGCGGCCAAAATTGAGCTCTGAATGCTGTCCAAACGAAAACGGCGCATTAAAAGCG‑CCGTTTGCGTTGGGAAAACGGTGGGTCAGTGGCCTGGATACTCTGCAACCACTTCATCCCGTCCGCTCTTGTTGAGACCGATGACCTg < 1:280953/149‑1 (MQ=255) ccGCGGCCAAAATTGAGCTCTGAATGCTGTCCAAACGAAAACGGCGCCTTAAAAGCG‑CCGTTTGCGTTGGGAAAACGGTGGGTCAGTGGCCTg < 6:49835/93‑1 (MQ=255) cgcgGCCAAAATTGAGCTCTGAATGCTGTCCAAACGAAAACGGCGCCTTAAAAGCG‑CCGTTTGCGTTGGGAAAACGGTGGGTCAGTGGCCTGGATACTCTGCAACCACTTCATCCCGTCCGCTCTTGTTGAGACCGATGACCTGGTAt > 8:209646/1‑148 (MQ=255) gCCAAAATTGAGCTCTGAATGCTGTCCAAACGAAAACGGCGCCTTAAAAGCG‑CCGTTTGCGTTGGGAAAACGGTGGGTCAGTGGCCTGGATACTCTGCAACCACTTCATCCCGTCCGCTCTTGTTGAGACCGATGACCTGGt < 6:346588/142‑1 (MQ=255) gCCAAAATTGAGCTCTGAATGCTGTCCAAACGAAAACGGCGCCTTAAAAGCG‑CCGTTTGCGTTGGGAAAACGGTGGGTCAGTGGCCTGGATACTCTGCAACCACTTCATCCCGTCCGCTCTTGTTGAGACCGATGACCTGGt > 5:346588/1‑142 (MQ=255) gCCAAAATTGAGCTCTGAATGCTGTCCAAACG‑AAACGGCGCCTTAAAAGCG‑CCGTTTGCGTTGGGAAAACGGTGGGTCAGTGGCCTGGATACTCTGCAACCACTTCATCCCGTCCGCTCTTGTTGAGACCGATGACCTGGTATGCATga < 8:281893/149‑1 (MQ=255) ccAAAATTGAGCTCTGAATGCTGTCCAAACGAAAACGGCGCCTTAAAAGCG‑CCGTTTGCGTTGGGAAAACGGTGGGTCAGTGGCCTGGATACTCTGCAACCACTTCATCCCGTCCGCTCTTGTTGAGACCGATGACCTGGTATGCATga < 2:168358/149‑1 (MQ=255) cAAAATTGAGCTCTGAATGCTGTACAAACGAAAACGGAGCCTTAAAAGCG‑CCGTTTGCGTTGGGAAAACGGTGTGTCAGTGGCCTGGATACTCTGCAACCACTTCATCCCGTCCGCTCTTGATGATACCGATGAACAGGTATGCAt > 6:244800/1‑146 (MQ=255) aGCTCTGAATGCTGTCCAAACGAAAACGGCGCCTTAAAAGCG‑CCGTTTGCGTTGGGAAAACGGTGGGGCAGTGGCCTGGATACTCTGCAACCACTTCATCCCGTCCGCTCTTGTTGAGACCGATGACCTGGTATGCATGAGAGACAcc < 5:345066/148‑1 (MQ=255) ctctGAATGCTGTCCAAACGAAAACGGCGCCTTAAAAGCG‑CCGTTTGCGTTGGGAAAACGGTGGGTCAGTGGCCTGGATACTCTGCAACCACTTCATCCCGTCCGCTCTTGTTGAGACCGATGACCTGGTATGCATGAGAGACACCATc < 3:236139/149‑1 (MQ=255) ctGAATGCTGTCCAAACGAAAACGGCGCCTTAAAAGCG‑CCGTTTGCGTTGGGAAAACGGTGGGTCAGTGGCCTGGATACTCTGCAACCACTTCATCCCGTCCGCTCTTGTTGAGACCGATGCCCTGGTATGCATGAGAGACACCATcc > 7:128624/1‑148 (MQ=255) tCCAAACGAAAACGGCGCCTTAAAAGCG‑CCGTTTGCGTTGGGAAAACGGTGGGTCAGTGGCCTGGATACTCTGCAACCACTTCATCCCGTCCGCTCTTGTTGAGACCGATGACCTGGTATGCATGAGAGACACCATCCACTTCCATAcc > 3:145124/1‑149 (MQ=255) cccaaCGCAAACGGCGCTTTTAAGGCG‑CCGTTTTCGTTTGGAAAACGGTGGGTCAGTGGCCTGGATACTATGCAACCAATTAATCCCGTCCGCTCTTGTTGAGACCGATGACATGGTATGCATGAGAGACACAATACACTTCAATAcat > 8:214797/4‑147 (MQ=25) ccaaCGCAAACCGCGCTTTTAAGGCG‑CCGTTTTCGTTGGGAAAACGGTGGGTCAGTGGCCTGGATACTCTGCAACCACTTCATCCCGTCCGCTCTTGTTGAGACCGATGACCTGGTATCCATGAGAGACACCATCCACTACCATACCTg > 4:36459/3‑149 (MQ=38) cAAACGAAAACGGCGCCTTAAAAGCG‑ACGTTTGCTTTTGGAAAAAGGTGGGTCAGTGTCCTGGATACTCTGCAACCACTTCATCCCGTCCGCTCTTGTTGAGACCGATGACCTGGTATGCATGAGAGACACCATCCACTTCCATACCt < 6:165967/148‑1 (MQ=255) aaaCGAAAACGGCGCCTTACAAGCG‑CCGTTTGCGTTGGGAAAACGGTGGGTCAGTGGCCTGGATACTCTGCAACCACTTCATCCCGTCCGCTCTTGTTGAGACCGATGACCTGGTATGCATGAGAGACACCATCCACTTCCATACCTgg < 5:244800/149‑1 (MQ=255) aaaCGAAAACGGCGCCTTAAAAGCG‑CCGTTTGCGTTGGGAAAACGGTGGGTCAGTGGCCTGGATACTCTGCAACCACTTCATCCCGTCCGCTCTTGTTGAGACCGATGACCTGGTATGCATGAGAGACACCATCCACTTCCATACCTgg < 2:179979/149‑1 (MQ=255) aaaCGAAAACGGCGCCTTAAAAGCG‑CCGTTTGCGTTGGGAAAACGGTGGGTCAGTGGCCTGGATACTCTGCAACCACTTCATCCCGTCCGCTCTTGTTGAGACCGATGACCTGGTATGCATGAGAGACACCATCCACTTCCATACCTg > 5:248212/1‑148 (MQ=255) aaCGCAAACGGCGCTTTTAAGGCG‑CCGTTTTCGTTGGGAAAACGGTGGGTCAGTGGCCTGGATACTCTGCAACCACTTCATCCCGTCCGCTCTTGTTGAGACCGATGACCTGGTATGCATgaga < 6:2078/124‑1 (MQ=38) aaCGCAAACGGCGCTTTTAAGGCG‑CCGTTTTCGTTGGGAAAACGGTGGGTCAGTGGCCTGGATACTCTGCAACCACTTCATCCCGTCCGCTCTTGTTGAGACCGATGACCTGGTATGCATgaga > 5:2078/1‑124 (MQ=38) aaCGCAAACGGCGCTTTTAAGGCG‑CCGTTTGCGTTGGGAAAACGGTGGGTCAGTGGCCTGGATACTCTGCAACCACTTCATCCCGTCCGCTCTTGTTGAGACCGATGACCTGGTATGCATGAGAGACACCATCCAc < 7:240499/136‑1 (MQ=255) aaCGCAAACGGCGCTTTTAAGGCG‑CCGTTTGCGTTGGGAAAACGGTGGGTCAGTGGCCTGGATACTCTGCAACCACTTCATCCCGTCCGCTCTTGTTGAGACCGATGACCTGGTATGCATGAGAGACACCATCCAc > 8:240499/1‑136 (MQ=255) aaCGAAAACGGCGCCTTAAAAGCG‑CCGTTTGCGTTGGGAAAACGGTGGGTCAGTGGCCTGGATACTCTGCAACCACTTCATCCCGTCCGCTCTTGTTGAGACCGATGACCTGGTATGCATGAGAGACACCATCCACTTCCATACCTGga < 7:209646/149‑1 (MQ=255) aaaCGGCGCTTTTAAGGCG‑CCGTTTGCGTTGGGAAAACGGTGGGTCAGTGGCCTGGATACTCTGCAACCACTTCATCCCGTCCGCTCTTGTTGAGACCGATGACCTGGTATGCATGAGAGACACCATCCACTTCCATACCTGGAGAGcc > 2:191643/1‑149 (MQ=255) cGGCGCCTTAAAAGCG‑CCGTTTGCGTTGGGAAAACGGTGGGTCAGTGGCCTGGATACTCTGCAACCACTTCATCCCGTCCGCTCTTGTTGAGACCGATGACCTGGTATGCATGAGAGACACCATCCACTTCCATACCTGGAGAGCCTGc > 5:95365/1‑149 (MQ=255) gcCTTAAAAGCG‑CCGTTTGCGTTGGGAAAACGGTGGGTCAGTGGCCTGGATACTCTGCAACCACTTCATCCCGTCCGCTCTTGTTGAGACCGATGACCTGGTATGCATGAGAGACACCATCCACTTCCATACCTGGAGAGCCTGCCGGc < 6:95365/149‑1 (MQ=255) cTTAAAAGCG‑CCGTTTGCGTTGGGAAAAAGGTGGGTCAGTGGCCTGTATACTCTGCAACCACTTCATCCCGTCCGCTCTTGTTGAGACCGATGAACTGGTATGCATGAGAGAAACCATCCACTTCCATACCTGGAGAGCCTGCCGGCAt > 4:181567/1‑149 (MQ=255) | GGGGAAGCTGTGACGTGATGCCTGCGCAAATGACCTATGAAGACTCGACAGGCAAGCTCAACATTCTCGAATACCGCGCAGCTGGCATCAATTGCCGCGGCCAAAATTGAGCTCTGAATGCTGTCCAAACGAAAACGGCGCCTTAAAAGCG‑CCGTTTGCGTTGGGAAAACGGTGGGTCAGTGGCCTGGATACTCTGCAACCACTTCATCCCGTCCGCTCTTGTTGAGACCGATGACCTGGTATGCATGAGAGACACCATCCACTTCCATACCTGGAGAGCCTGCCGGCAT > NC_002947/6129029‑6129318 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |