Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 657,221 | A→G | 9.8% | D218G (GAC→GGC) | PP_0564 → | hypothetical protein |
Read alignment evidence... | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 657,221 | 0 | A | G | 9.8% | 163.3 / 7.4 | 61 | D218G (GAC→GGC) | PP_0564 | hypothetical protein |
Reads supporting (aligned to +/- strand): ref base A (31/24); new base G (3/3); total (34/27) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.95e-01 |
AAGAGCTGGATCCTGCCATCGAGCGAGTCGGAGTTCGAAGAGGGCATCAAGTCGCTGACCCGCTACCAGACCCGTCTGGCTGCCGGCGACAAGGGCGCTATCTTCTATACCCGCGCCGACAACCTGAACAACTGGCTGGGTGACGTCGCCACCCGTCTGGGCTCGCTGTCGCAGCGCCTGTCGGCCAGCGTTGGCCGGGTCAAGCTCAACACCACGCTGAAGACCGAGTCGGTCGTTGCCGGCCAGGCGCCGCAGGTGGATGAGGAGCTGGTGGAAACCCCATGGCTGCAG > NC_002947/657079‑657369 | aaGAGCTGGATCCTGCCATCGAGCGAGTCGGAGTTCGAAGAGGGCATCAAGTCGCTGACCCGCTACCAGACCCGTCTGGCTGCCGGCGACAAGGGCGCTATCTTCTATACCCGCGCCGACAACCTGAACAACTGGCTGGGTGACGTCGc > 6:1410/1‑149 (MQ=255) gATCCTGCCATCGAGCGAGTCGGAGTTCGAAGAGGGCATCAAGTCGTTGACCCGCTACCAGACCCGTCTGGCTGCCGGCGACAAGGGCGCTATCTTCTATACACGCGCCGACAACCTGAACAACTGGCTGGGTGACGTCGCCACCCGTc > 4:74671/1‑149 (MQ=255) aTCCTGCCATCGAGCGAGTCGGAGTTCGAAGAGGGCATCAAGTCGCTGACCCGCTACCAGACCCGTCTGGCTGCCGGCGACAAGGGCGCTATCTTCTATACCCGCGCCGACAACCTGAACAACTGGCTGGGTGACGTCGCCACCCGTCt < 5:188281/149‑1 (MQ=255) tGCCATCGAGCGAGTCGGAGTTCGAAGAGGGCATCAAGTCGCTGACCCGCTACCAGACCCGTCTGGCTGCCGGCGACAAGGGCGCTATCTTCTATACCCGCGCCGACAACCTGAACAACTGGCTGGGTGACGTCGCCACCCGTCTGGGc > 2:292881/1‑149 (MQ=255) cgaTCGAGCGAGTCGGAGTTCGAAGAGGGCATCAAGTCGCTGACCCGCTACCAGACCCGTCTGGCTGCCGGCGACAAGGGCGCTATCTTCTATACCCGCGCCGACAACCTGAACAACTGGCTGGGTGACGTCGCCACCCGTCTGGGCTc < 8:24549/147‑1 (MQ=255) ccATCGAGCGAGTCGGAGTTCGAAGAGGGCATCAAGTCGCTGACCCGCTACCAGACCCGTCTGGCTGCCGGCGACAAGGGCGCTATCTTCTATACCCGCGCCGACAACCTGAACATCTGGCTGGGTGACGTCGCCACCCGTCTGGGCTc < 1:11481/149‑1 (MQ=255) cATCGAGCGAGTCGGAGTTCGAAGAGGGCATCAAGTCGCTGACCCGCTACCAGACCCGTCTGGCTGCCGGCGACAAGGGCGCTATCTTCTATACCCGCGCCGACAACCTGAACAACTGGCTGGGTGACGTCGCCa < 2:128480/135‑1 (MQ=255) cATCGAGCGAGTCGGAGTTCGAAGAGGGCATCAAGTCGCTGACCCGCTACCAGACCCGTCTGGCTGCCGGCGACAAGGGCGCTATCTTCTATACCCGCGCCGACAACCTGAACAACTGGCTGGGTGACGTCGCCa > 1:128480/1‑135 (MQ=255) ggAGTTCGAAGAGGGCATCAAGTCGCTGACCCGCTACCAGACCCGTCTGGCTGCCGGCGACAAGGGCGCTATCTTCTATACCCGCGCCGACAACCTGAACAACTGGCTGGGTGACGTCGCCACCCGTCTGGGCTCGCTGTCGCAGCGcc > 3:239329/1‑149 (MQ=255) gTTCGAAGAGGGCATCAAGTCGCTGACCCGCTACCAGACCCGTCTGGCTGCCGGCGACAAGGGCGCTATCTTCTATACCCGCGCCGACAACCTGAACAACTGGCTGGGTGGCgac > 3:104352/1‑113 (MQ=255) gTTCGAAGAGGGCATCAAGTCGCTGACCCGCTACCAGACCCGTCTGGCTGCCGGCGACAAGGGCGCTATCTTCTATACCCGCGCCGACAACCTGAACAACTGGCTGGGTGGCgac < 4:104352/115‑3 (MQ=255) agGGCATCAAGTCGCTGACCCGCTACCAGACCCGTCTGGCTGCCGGCGACAAGGGCGCTATCTTCTATACCCGCGCCGACAACCTGAACAACTGGCTGGGTGACGTCGCCACCCGTCTGGGCTCGCTGTCGCAGCGCCTGTCGGCCAGc < 5:1410/149‑1 (MQ=255) cATCAAGTCGCTGACCCGCTACCAGACCCGTCTGGCTGCCGGCGACAAGGGCGCTATCTTCTATACCCGCGCCGACAACCTGAACAACTGGCTGGGTGACGTCGCCACCCGTCTGGGCTCGCTGTCGCAGCGCCTGTCGGCCAGCGTTg > 6:176965/1‑149 (MQ=255) aTCAAGTCGCTGACCCGCTACCAGACCCGTCTGGCTGCCGGCGACAAGGGCGCTATCTTCTATACCCGCGCCGACAACCTGAACAACTGGCTGGGTGACGTCGCCACCCGTCTGGGCTCGCTGTCGCAGCGCCTGTCGGCCAACGCTgg > 5:324203/1‑149 (MQ=255) gTCGCTGACCCGCTACCAGACCCGTCTGGCTGCCGGCGACAAGGGCGCTATCTTCTATACCCGCGCCGACAACCTGAACAACTGGCTGGGTGACGTCGCCACCCGTCTGGGCTCGCTGTCGCAGCGCCTGTCGGCCAACGCTGGCCgac < 6:324203/149‑3 (MQ=255) tCGCTGACCCGCTACCAGACCCGTCTGGCTGCCGGCGACAAGGGCGCTATCTTCTATACCCGCGCCGACAACCTGAACAACTGGCTGGGTGACGTCGCCACCCGTCTGGGCTCGCTGTCGCATCGCCTGTCGGCCAACGCTGGCCgaca < 8:53528/149‑4 (MQ=255) tGACCCGCTACCAGACCCGTCTGGCTGCCGGCGACAAGGGCGCTATCTTCTATACCCGCGCCGACAACCTGAACAACTGGCTGGGTGACGTCGCCACCCGTCTGGGCTCGCTGTCGCAGCGCCTGTCGGCCAGCGTTGGCAGGGTCAAg > 7:1283/1‑149 (MQ=255) ccGCTACCAGACCCGTCTGGCTGCCGGCGACAAGGGCGCTATCTTCTATACCCGCGCCGACAACCTGAACAACTGGCTGGGTGACGTCGCCACCCGTCTGGGCTCGCTGTCGCAGCGCCTGTCGGCCAg > 1:86286/1‑129 (MQ=255) ccGCTACCAGACCCGTCTGGCTGCCGGCGACAAGGGCGCTATCTTCTATACCCGCGCCGACAACCTGAACAACTGGCTGGGTGACGTCGCCACCCGTCTGGGCTCGCTGTCGCAGCGCCTGTCGGCCAg < 2:86286/129‑1 (MQ=255) ccGCTACCAGACCCGTCTGGCTGCCGGCGACAAGGGCGCTATCTTCTATACCCGCGCCGACAACCTGAACAACTGGCTGGGTGACGTCGCCACCCGTCTGGGCTCGCTGTCGCAGCGCCTGTCGGCCAGCGTTGGCCGGGTCAAGCTc > 1:116983/1‑148 (MQ=255) ccAGACCCGTCTGGCTGCCGGCGACAAGGGCGCTATCTTCTATACCCGCGCCGACAACCTGAACAACTGGCTGGGTGACGTCGCCACCCGTCTGGGCTCGCTGTCGCAGCGCCTGTCGGCCAGCGTTGGCCGGGTCAAGCTCAAcacca > 7:261136/1‑149 (MQ=255) cAGACCCGTCTGGCTGCCGGCGACAAGGGCGCTATCTTCTATACCCGCGCCGACAACCTGAACAACTGGCTGGGTGGCGACGTCAcc < 4:332510/87‑1 (MQ=255) cAGACCCGTCTGGCTGCCGGCGACAAGGGCGCTATCTTCTATACCCGCGCCGACAACCTGAACAACTGGCTGGGTGGCGACGTCAcc > 3:332510/1‑87 (MQ=255) cAGACCCGTCTGGCTGCCGGCGACAAGGGCGCTATCTTCTATACCCGCGCCGACAACCTGAACAACTGGCTGGGTGACGTCGCCACCCGTCTGGGCTCGCTGTCGCAGCGCCTGTCGGCCAGCGTTGGCCGGGTCAAGCTCAAcaccac > 6:219558/1‑149 (MQ=255) aGACCCGTCTGGCTGCCGGCGACAAGGGCGCTATCTTCTATACCCGCGCCGACAACCTGAACAACTGGCTGGGTGACGTCGCCACCCGTCTGGGCTCGCTGTCGCAGCGCCTGTCGGCCAGCGTTGGCCGGGTCAAGCTCAACACCACg < 7:68554/149‑1 (MQ=255) aCCCGTCTGGCTGCCGGCGACAAGGGCGCTATCTTCTATACCCGCGCCGACAACCTGAACAACTGGCTGGGTGACGTCGCCACCCGTCTGGGCTCGCTGTCGCAGCGCCTGTCGGCCAGCGTTGGCCGGGTCAAGCTCAACACCACGCt < 5:176965/149‑1 (MQ=255) aCCCGTCTGGCTGCCGGCGACAAGGGCGCTATCTTCTATACCCGCGCCGACAACCTGAACAACTGGCTGGGTGACGTCGCCACCCGTCTGGGCTCGCTGTCGCAGCGCCAGTCGGCCAGCGTTGGCCGGGTCAAGCTCAACACCACGCt > 8:216282/1‑149 (MQ=255) gTCTGGCTGCCGGCGACAAGGGCGCTATCTTCTATACCCGCGCCGACAACCTGAACAACTGGCTGGGTGACGTCGCCACCCGTCTGGGCTc > 6:224287/1‑91 (MQ=255) gTCTGGCTGCCGGCGACAAGGGCGCTATCTTCTATACCCGCGCCGACAACCTGAACAACTGGCTGGGTGACGTCGCCACCCGTCTGGGCTc < 5:224287/91‑1 (MQ=255) gTCTGGCTGCCGGCGACAAGGGCGCTATCTTCTATACCCGCGCCGACAACCTGAACAACTGGCTGGGTGACGTCGCCACCCGTCTGGGCTCGCTGTCGCAGCGCCTGTCGGCCAGCGTTGGCCGGGTCAAGCTCAACACCACGCTg > 8:244059/1‑146 (MQ=255) ggCTGCCGGCGACAAGGGCGCTATCTTCTATACCCGCGCCGACAACCTGAACAACTGGCTGGGTGACGTCGCCACCCGTCTGGGCTCGCt > 5:193124/1‑90 (MQ=255) ggCTGCCGGCGACAAGGGCGCTATCTTCTATACCCGCGCCGACAACCTGAACAACTGGCTGGGTGACGTCGCCACCCGTCTGGGCTCGCt < 6:193124/90‑1 (MQ=255) gCTGCCGGCGACAAGGGCGCTATCTTCTATACCCGCGCCGACAACCTGAACAACTGGCTGGGTGACGTCGCCACCCGTCTGGGCTCGCTGTCGCAGCGCCTGTCGGCCAGCGTTGGCCGGGTCAAGCTCAACACCACGCTGAAGAcc < 2:116983/147‑1 (MQ=255) tGCCGGCGACAAGGGCGCTATCTTCTATACCCGCGCCGACAACCTGAACAACTGGCTGGGTGACGTCGCCACCCGTCTGGGCTCGCTGTCGCAGCGCCTGTCGGCCAGCGTTGGCCGGGTCAAGCTCAACACCACGCTGAAGACCGAgt > 1:296454/1‑149 (MQ=255) ccGGCGACAAGGGCGCTATCTTCTATACCCGCGCCGACAACCTGAACAACTGGCTGGGTGACGTCGCCACCCGTCTGGGCTCGCTGTCGCAGCGCCTGTCGGCCAGCGTTGGCCGGGTCAAGCTCAACACCACGCTGAAGACCGAgt < 8:261136/147‑1 (MQ=255) gACAAGGGCGCTATCTTCTATACCCGCGCCGACAACCTGAACAACTGGCTGGGTGACGTCGCCACCCGTCTGGGCTCGCTGTCGCAGCGCCTGTCGGCCAGCGTTGGCCGGGTCAAGCTCAACACCACGCTGAAGACCGAGTCGGTCGt > 3:255316/1‑149 (MQ=255) aaGGGCGCTATCTTCTATACCCGCGCCGACAACCTGAACAACTGGCTGGGTGACGTCGCCACCCGTCTGGGCTCGCTGTCGCAGCGCCTGTCGGCCAGCGTTGGCCGGGTCAAGCTCAACACCACGCTGAAGACCGAGTCGGTCGTTGc > 8:235922/1‑149 (MQ=255) gggCGCTATCTTCTATACCCGCGCCGACAACCTGAACAACTGGCTGGGTGACGTCGCCACCCGTCTGGGCTCGCTGTCGCAGCGCCTGTCGGCCAGCGTTGGCCGGGTCAAGCTCCACACCACGCTGAAGAACGAGTCGGGCGTTGCCg > 8:279599/1‑149 (MQ=255) ggCGCTATCTTCTATACCCGCGCCGACAACCTGAACAACTGGCTGGGTGACGTCGCCACCCGTCTGGGCTCGCTGTCGCAGCGCCTGTCGGCCAGCGTTGGCCGGGTCAAGCTCAACACCACGCTGAAGACCGAGTCGGTCGTTGCCgg < 4:326493/149‑1 (MQ=255) gcTATCTTCTATACCCGCGCCGACAACCTGAACAACTGGCTGGGTGACGTCGCCACCCGTCTGGGCTCGCTGTCGCAGCGCCTGTCGGCCAGCGTTGGCCGGGTCAAGCTCAACACCACGCTGAAGACCGAGTCGGTCGTTGCCGGc > 7:48593/1‑147 (MQ=255) tATCTTCTATACCCGCGCCGACAACCTGAACAACTGGCTGGGTGACGTCGCCACCCGTCTGGGCTCGCTGTCGCAGCGCCTGTCGGCCAGCGTTGGCCGGGTCAAGCTCAACACCACGCTGAAGACCGAGTCGGTCGTTGCCGGCCAgg > 7:141032/1‑149 (MQ=255) ttctATACCCGCGCCGACAACCTGAACAACTGGCTGGGTGACGTCGCCACCCGTCTGGGCTCGCTGTCGCAGCGCCTGTCGGCCAGCGTTGGCCGGGTCAAGCTCAACACCACGCTGaa > 8:222363/1‑119 (MQ=255) ttctATACCCGCGCCGACAACCTGAACAACTGGCTGGGTGACGTCGCCACCCGTCTGGGCTCGCTGTCGCAGCGCCTGTCGGCCAGCGTTGGCCGGGTCAAGCTCAACACCACGCTGaa < 7:222363/119‑1 (MQ=255) aCCCGCGCCGACAACCTGAACAACTGGCTGGGTGACGTCGCCACCCGTCTGGGCTCGCTGTCGCAGCGCCTGTCGGCCAGCGTTGGCCGGGTCAAGCTCAACACCACGCTGAAGACCGAGTCGGTCGTTGCCGGCCAGGCGCCGCAGGt < 7:163745/149‑1 (MQ=255) ccGCGCCGACAAGCTGAACATCTGGCTGGGTGACGGCGCCACCCGTCTGGGCTCGCTGTCGCAGCGCCTGTCGGCCAGCGTTGGCCGGGTCAAGCTCAACACCACGCTGAAGACCGAGTCGGTCGt < 6:54559/126‑1 (MQ=255) ccGCGCCGACAACCTGAACAACTGGCTGGGTGACGTCGCCACCCGTCTGGGCTCGCTGTCGAAGCGCCTGTCGGCCAGCGTTGGCCGGGGCAAGCTCAACACCACGCTGCAGCCCGCGTCGGGCGt > 5:54559/1‑126 (MQ=255) gcgcCGACAACCTGAACAACTGGCTGGGTGACGTCGCCACCCGTCTGGGCTCGCTGTCGCAGCGCCTGTCGGCCAGCGTTGGCCGGGTCAAGCTCAACACCACGCTGAAGACCGAGTCGGTCGTTGCCGGCCAGGCGCCGCAGGTGGAt > 6:180069/1‑149 (MQ=255) gcgcCGACAACCTGAACAACTGGCTGGGTGACGTCGCCACCCGTCTGGGCTCGCTGTCGCAGCGCCTGTCGGCCAGCGTTGGCCGGGTCAAGCTCAACACCACGCTGAAGACCGAGTCGGTCGTTGCCGGCCAGGCGCCGCAGGTGGAt < 4:255316/149‑1 (MQ=255) cGACAACCTGAACAACTGGCTGGGTGACGTCGCCACCCGTCTGGGCTCGCTGTCGCAGCGCCTGTCGGCCAGCGTTGGCCGGGTCAAGCTCAACACCACGCTGAAGACCGAGTCGGTCGTTGCCGGCCAGGCGCCGCAGGTGGATgagg < 2:296454/149‑1 (MQ=255) aCAACCTGAACAACTGGCTGGGTGACGTCGCCACCCGTCTGGGCTCGCTGTCGCAGCGCCTGTCGGCCAGCGTTGGCCGGGTCAAGCTCAACACCACGCTGAAGACCGAGTCGGTCGTTGCCGGCCAGGCGCCGCAGGTGGATgag < 6:231787/146‑1 (MQ=255) aCAACCTGAACAACTGGCTGGGTGACGTCGCCACCCGTCTGGGCTCGCTGTCGCAGCGCCTGTCGGCCAGCGTTGGCCGGGTCAAGCTCAACACCACGCTGAAGACCGAGTCGGTCGTTGCCGGCCAGGCGCCGCAGGTGGATgag > 5:231787/1‑146 (MQ=255) cTGAACAACTGGCTGGGTGACGTCGCCACCCGTCTGGGCTCGCTGTCGCAGCGCCTGTCGGCCAGCGTTGGCCGGGTCAAGCTCAACACCACGCTGAAGACCGAGTCGGTCGTTGCCGGCCAGGCGCCGCAGGTGGATGAGGAGCtggt > 4:275309/1‑149 (MQ=255) aacaacTGGCTGGGTGACGTCGCCACCCGTCTGGGCTCGCTGTCGCAGCGCCTGTCGGCCAGCGTTGGCCGGGTCAAGCTCAACACCACGCTGAAGACCGAGTCGGTCGTTGCCGGCCAGGCGCCGCAGGTGGATGAGGAGCtggtgg > 1:256306/1‑148 (MQ=255) gctggGTGACGTCGCCACCCGTCTGGGCTCGCTGTCGCAGCGCCTGTCGGCCAGCGTTGGCCGGGTCAAGCTCAACACCACGCTGAAGACCGAGTCGGTCGTTGCCGGCCAGGCGCCGCAGGTGGATGAGGAGCTGGTGGAAAcccc < 5:219558/147‑1 (MQ=255) gctggGTGACGTCGCCACCCGTCTGGGCTCGCTGTCGCAGCGCCTGTCGGCCAGCGTTGGCCGGGTCAAGCTCAACACCACGCTGAAGACCGAGTCGGTCGTTGCCGGCCAGGCGCCGCAGGTGGATGAGGAGCTGGTGGAAAcccc < 3:74671/147‑1 (MQ=255) gctggGTGACGTCGCCACCCGTCTGGGCTCGCTGTCGCAGCGCCTGTCGGCCAGCGTTGGCCGGGTCAAGCTCAACACCACGCTGAAGACCGAGTCGGTCGTTGCCGGCCAGGCGCCGCAGGTGGATGAGGAGCTGGTGGAAACCCCAt > 6:300818/1‑149 (MQ=255) gctggGTGACGTCGCCACCCGTCTGGGCTCGCTGTCGCAGCGCCTGTCGGCCAGCGTTGGCCGGGTCAAGCTCAACACCACGCTGAAGACCGAGTCGGTCGTTGCCGGCCAGGCGCCGCAGGTGGATGAGGAGCTGGTGGAAACCCCAt > 6:210989/1‑149 (MQ=255) gctggGTGACGTCGCCACCCGTCTGGGCTCGCTGTCGCAGCGCCTGTCGGCCAGCGTTGGCCGGGTCAAGCTCAACACCACGCTGAAGACCGAGTCGGTCGTTGCCGGCCAGGCGCCGCAGGTGGATGAGGAGCTGGTGGAAACCCCAt > 3:78031/1‑149 (MQ=255) gTGGCGACGTCACCCGTCTGGGCTCGCTGTCGCAGCGCCTGTCGGCCAGCGTTGGCCGGGTCAAGCTCAACACCACGCTGAAGACCGAGTCGGTCGTTGCCg < 2:192599/102‑1 (MQ=255) gTGGCGACGTCACCCGTCTGGGCTCGCTGTCGCAGCGCCTGTCGGCCAGCGTTGGCCGGGTCAAGCTCAACACCACGCTGAAGACCGAGTCGGTCGTTGCCg > 1:192599/1‑102 (MQ=255) tGACGTCGCCACCCGTCTGGGCTCGCTGTCGCAGCGCCTGTCGGCCAGCGTTGGCCGGGTCAAGCTCAACACCACGCTGAAGACCGAGTCGGTCGTTGCCGGCCAGGCGCCGCAGGTGGATGAGGAGCTGGTGGAAACCCCATGGCTGc < 7:244059/149‑1 (MQ=255) aCGTCGCCACCCGTCTGGGCTCGCTGTCGCAGCGCCTGTCGGCCAGCGTTGGCCGGGTCAAGCTCAACACCACGCTGAAGACCGAGTCGGTCGTTGCCGGCCAGGCGCCGCAGGTGGATGAGGAGCTGGTGGAAACCCCATGGCTGCAg < 7:235922/149‑1 (MQ=255) | AAGAGCTGGATCCTGCCATCGAGCGAGTCGGAGTTCGAAGAGGGCATCAAGTCGCTGACCCGCTACCAGACCCGTCTGGCTGCCGGCGACAAGGGCGCTATCTTCTATACCCGCGCCGACAACCTGAACAACTGGCTGGGTGACGTCGCCACCCGTCTGGGCTCGCTGTCGCAGCGCCTGTCGGCCAGCGTTGGCCGGGTCAAGCTCAACACCACGCTGAAGACCGAGTCGGTCGTTGCCGGCCAGGCGCCGCAGGTGGATGAGGAGCTGGTGGAAACCCCATGGCTGCAG > NC_002947/657079‑657369 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |