Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 875,283 | A→C | 7.3% | intergenic (+22/+24) | PP_0759 → / ← PP_0760 | hypothetical protein/membrane protein |
Read alignment evidence... | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 875,283 | 0 | A | C | 7.3% | 169.7 / 4.7 | 55 | intergenic (+22/+24) | PP_0759/PP_0760 | hypothetical protein/membrane protein |
Reads supporting (aligned to +/- strand): ref base A (25/26); new base C (2/2); total (27/28) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.63e-01 |
CAAGGCTTCCGAAGGTGCACCGCCTGAGTTCATGAGTACTCACCCGGCGTCCGCGAGCCGCATTGCTTCGCTGCAG‑GCGGCGATTCCGAAGGTGATGCCGCTGTATCAGGCTGCCGCCAAGCCGTAAATGCCTGAATCCTGGGGCTGCATGGCAGCCCCCCCGGTTTTCCCTTTACCCAATCCAGCCACTGGCCTTCATTGCCGAATAGACGGCCACGATTGCCAGTACGAAGAACGCCGTTGCCGCCAGGCGGCGAATCAGCGTCAACGGCAGTTTGTCTGCCGCGAAGTTACC > NC_002947/875135‑875429 | cAAGGCTTCCGAAGGTGCACCGCCTGAGTTCATGAGTACTCACCCGGCGTCCGCGAGCCGCATTGCTTCGCTGCAG‑GCGGCGATTCCGAAGGTGATGCCGCTGTATCAGGCTGCCGCCAAGCCGTAAATGCCTGAATCCTGGGGCTGCa < 7:238496/149‑1 (MQ=255) ggCTTCCGAAGGTGCACCGCCTGAGTTCATGAGTACTCACCCGGCGTCCGCGAGCCGCATTGCTTCGCTGCAG‑GCGGCGATTCCGAAGGTGATGCCGCTGTATCAGGCTACCGCCAAGCCGTAAATGCCTGAATCCTGGGGCTGCATgg > 3:164883/1‑149 (MQ=255) cTTCCGAAGGTGCACCGCCTGAGTTCATGAGTACTCACCCGGCGTCCGCGAGCCGCATTGCTTCGCTGCAG‑GCGGCGATTCCGAAGGTGATGCCGCTGTATCAGGCTGCCGCCAAGCCGTAAATGCCTGAATCCTGGGGCTGCATGGCa < 5:23403/149‑1 (MQ=255) ccGCAGGTGCACCGCCTGAGTTCATGAGTACTCACCCGGCGTCCGCGAGCCGCATTGCTTCGCTGCAG‑GCGGCGATTCCGAAGTTTATGCCGCTGTATCAGGCTGCCGCCAAGCCGTAAATGCCTGAATCCTGGGGCTGCATGGCAg < 6:24974/147‑1 (MQ=255) ggTGCACCGCCTGAGTTCATGAGTACTCACCCGGCGTCCGCGAGCCGCATTGCTTCGCTGCAG‑GCGGCGATTCCGAAGGTGATGCCGCTGAATCAGGCTGCCGCCAAGCCGTAAATGCCTGAATCCTGGGGCTGCCATGCAGccccagg < 8:292906/149‑4 (MQ=255) gTGCACCGCCTGAGTTCATGAGTACTCACCCGGCGTCCGCGAGCCGCATTGCTTCGCTGCAG‑GCGGCGATTCCGAAGGTGATGCCGCTGTATCAGGCTGCCGCCAAGCCGTAAATGCCTGAATCCTGGGGCTGCATGGCAGcccccgga < 4:33340/149‑4 (MQ=255) gCACCGCCTGAGTTCATGAGTACTCACCCGGCGTCCGCGAGCCGCATTGCTTCGCTGCAG‑GCGGCGATTCCGAAGGTGATGCCGCTGTATCAGGCTGCCGCCAAGCCGTAAATGCCTGAATCCTGGGGCTGCATGGCAGCCCCCCCGGt > 2:260245/1‑149 (MQ=255) gCACCGCCTGAGTTCATGAGTACTCACCCGGCGTCCGCGAGCCGCATTGCTTCGCTGCAG‑GCGGCGATTCCGAAGGTGATGCCGCTGTATCAGGCTGCCGCCAAGCCGTAAATGCCTGAATCCTGGGGCTGCATGGCAGCCCCCCCGGt > 2:282825/1‑149 (MQ=255) ccGCCTGAGTTCATGAGTACTCACCTGGCGTCCGCGAGCCGCATTGCTTCGCTGCAG‑GCGGCGATTCCGAAGGTGATGCCGCTGTATCAGGCTGCCGCCAAGCCGTAAATGCCTGAATCCTGGGGCTGCATGGCAGCCCCCCCGGtttt > 3:300562/1‑149 (MQ=255) ccGCCTGAGTTCATGAGTACTCACCCGGCGTCCGCGAGCCGCATTGCTTCGCTGCAG‑GCGGCGATTCCGAAGGTGATGCCGCTGTATCAGGCTGCCGCCAAGCCGTAAATGCCTGAATCCTGGGGCTGCATGGCAGCCCCCCCGGtttt < 1:260245/149‑1 (MQ=255) cGCCTGAGTTCATGAGTACGCACCCGGCGTCCGCGAGCCGCATTGCTTCGCTGCAG‑GCGGCGATTCCGAAGGTGATGCCGCTGTATCAGGCTGCCGCCAAGCCGTAAATGCCTGAATCCTGGGGCTGCATGGCAGCCCCCCCGGTTTTc < 4:50954/149‑1 (MQ=255) gCCTGAGTTCATGAGTACTCACCCGGCGTCCGCGAGCCGCATTGCTTCGCTGCAG‑GCGGCGATTCCGAAGGTGATGCCGCTGTATCAGGCTGCCGCCAAGCCGTAAATGCCTGAATCCTGGGGCTGCATGGCAGCCCCCCCGGTTTTcc < 6:293719/149‑1 (MQ=255) ccTGAGTTCATGAGTACTCACCCGGCGTCCGCGAGCCGCATTGCTTCGCTGCAG‑GCGGCGATTCCGAAGGTGATGCCGCTGTATCAGGCTGCCGCCAAGCCGTAAATGCCTGAATCCGGGGGCTGCCATGCAGcccca < 1:345722/138‑2 (MQ=255) ccTGAGTTCATGAGTACTCACCCGGCGTCCGCGAGCCGCATTGCTTCGCTGCAG‑GCGGCGATTCCGAAGGTGATGCCGCTGTATCAGGCTGCCGCCAAGCCGTAAATGCCTGAATCCGGGGGCTGCCATGCAGcccca > 2:345722/1‑137 (MQ=255) cTGAGTTCATGAGTACTCACCCGGCGTCCGCGAGCCGCATTGCTTCGCTGCAGTACGGCGATTCCGAAGGTGATGCCGCTGTATCAGGCTGCCGCCAAGCCGTAAATGCCTGAATCCTGGGGCTGCATGGCAGCCCCCCCGGTTTTccc > 1:263581/1‑149 (MQ=255) aGTTCATGAGTACTCACCCGGCGTCCGCGAGCCGCATTGCTTCGCTGCAG‑GCGGCGATTCCGAAGGTGATGCCGCTGTATCAGGCTGCCGCCAAGCCGTAAATGCCTGAATCCTGGGGCTGCATGGCAGCCCCCCCGGTTTTCCCtt < 5:1141/147‑1 (MQ=255) aGTTCATGAGTACTCACCCGGCGTCCGCGAGCCGCATTGCTTCGCTGCAG‑GCGGCGATTCCGAAGGTGATGCCGCTGTATCAGGCTGCCGCCAAGCCGTAAATGCCTGAATCCTGGGGCTGCATGGCAGCCCCCCCGGTTTTCCCTTTa < 3:50456/149‑1 (MQ=255) ttCATGAGTACTCACCTGGCGTCCGCGAGCCGCATTGCTTCGCTGCAG‑GCGGCGATTCCGAAGGTGATGCCGCTGTATCAGGCTGCCGCCAAGCCGTAAATGCCTGAATCCTGGGGCTGCATGGCAGCCCCCCCGGTTTTCCCTTTAcc < 4:300562/149‑1 (MQ=255) aTGAGTACTCACCCGGCGTCCGCGAGCCGCATTGCTTCGCTGCAG‑GCGGCGATTCCGAAGGTGATGCCGCTGTATCAGGCTGCCGCCAAGCCGTAAATGCCTGAATCCTGGGGCTGCATGGCAGCCCCCCCGGTTTTCCCTTTACCCaa > 4:316251/1‑149 (MQ=255) tGAGTACTCACCCGGCGTCCGCGAGCCGCATTGCTTCGCTGCAG‑GCGGCGATTCCGAAGGTGATGCCGCTGTATCAGGCTACCGCCAAGCCGTAAATGCCTGAATCCTGGGGCTGCATGGCAGCCCCCCCGGTTTTCCCTTTACCCAAt < 4:164883/149‑1 (MQ=255) tACTCACCCGGCGTCCGCGAGCCGCATTGCTTCGCTGCAG‑GCGGCGATTCCGAAGGTGATGCCGCTGTATCAGGCTGCCGCCAAGCCGTAAATGCCTGAATCCTGGGGCTGCATGGCAGCCCCCCCGGTTTTCCCTTTACCCAATCCa < 5:63565/148‑1 (MQ=255) aCCCGGCGTCCGCGAGCCGCATTGCTTCGCTGCAG‑GCGGCGATTCCGAAGGTGATGCCGCTGTATCAGGCTGCCGCCAAGCCGTAAATGCCTGAATCCTGGGGCTGCATGGCAGCCCCCCCGGTTTTCCCTTTACCCAATCCAGCCACt > 2:19923/1‑149 (MQ=255) ccGGCGTCCGCGAGCCGCATTGCTTCGCTGCAG‑GCGGCGATTCCGAAGGTGATGCCGCTGTATCAGGCTGCCGCCAAGCCGTAAATGCCTGAATCCTGGGGCTGCATGGCAGCCCCCCCGGTTTTCCCTTTACCCAATCCAGCCACTgg > 6:140978/1‑149 (MQ=255) gAGCCGCATTGCTTCGCTGCAG‑GCGGCGATTCCGAAGGTGATGCCGCTGTATCAGGCTGCCGCCAAGCCGTAAATGCCTGAATCCTGGGGCTGCATGGCAGCCCCCCCGGTTTTCCCTTTACCCAATCCAGCCACTGGCCTTCATTGcc < 8:220018/149‑1 (MQ=255) ccGCATTGCTTCGCTGCAG‑GCGGCGATTCCGAAGGTGATGCCGCTGTATCAGGCTGCCGCCAAGCCGTAAATGCCTGAATCCTGGGGCTGCATGGCAGCCCCCCCGGTTTTCCCTTTACCCAATCCAGCCACTGGCCTTCATTGCCGaa > 7:34051/1‑149 (MQ=255) aTTGCTTCGCTGCAG‑GCGGCGATTCCGAAGGTGATGCCGCTGTATCAGGCTGCCGCCAAGCCGTAAATGCCTGAATCCTGGGGCTGCATGGCAGCCCCCCCGGTTTTCCCTTTACCCAATCCAGCCACTGGCCTTCATTGCCGAATAGa > 8:188935/1‑149 (MQ=255) ttCGCTGCAG‑GCGGCGATTCCGAAGGTGATGCCGCTGTATCAGGCTGCCGCCAAGCCGTAAATGCCTGAATCCTGGGGCTGCATGGCAGCCCCCCCGGTTTTCCCTTTACCCAATCCAGCCACTGGCCTTCATTGCCGAATAGACGGcc > 3:156039/1‑149 (MQ=255) ttCGCTGCAG‑GCGGCGATTCCGAAGGTGATGCCGCTGTATCAGGCTGCCGCCAAGCCGTAAATGCCTGAATCCTGGGGCTGCATGGCAGCCCCCCCGGTTTTCCCTTTACCCAATCCAGCCACTGGCCTTCATTGCCGAATAGACGGc > 3:150974/1‑148 (MQ=255) cAG‑GCGGCGATTCCGAAGGTGATGCCGCTGTATCAGGCTGCCGCCAAGCCGTAAATGCCTGAATCCTGGGGCTGCATGGCAGCCCCCCCGGTTTTCCCTTTACCCAATCCAGCCACTGGCCTTCATTGCCGAATAGACGGCCACGAtt < 5:140978/148‑1 (MQ=255) ggcgATTCCGAAGGTGATGCCGCTGTATCAGGCTGCCGCCAAGCCGTAAATGCCTGAATCCTGGGGCTGCATGGCAGCCCCCCCGGTTTTCCCTTTACCCAATCCAGCCACTGGCCTTCATTGCCGAATAGACGGCCACGATTGCCAGt < 2:263581/149‑1 (MQ=255) ttCCGAAGGTGATGCCGCTGTATCAGGCTGCCGCCAAGCCGTAAATGCCTGAATCCTGGGGCTGCATGGCAGCCCCCCCGGTTTTCCCTTTACCCAATCCAGCCACTGGCCTTCATTGCCGAATAGACGGCCACGATTGCCAGTACg > 3:267040/1‑147 (MQ=255) cGAAGGTGATGCCGCTGTATCAGGCTGCCGCCAAGCCGTAAATGCCTGAATCCTGGGGCTGCATGGCAGCCCCCCCGGTTTTCCCTTTACCCAATCCAGCCACTGGCCTTCATTGcc > 2:36397/1‑117 (MQ=255) cGAAGGTGATGCCGCTGTATCAGGCTGCCGCCAAGCCGTAAATGCCTGAATCCTGGGGCTGCATGGCAGCCCCCCCGGTTTTCCCTTTACCCAATCCAGCCACTGGCCTTCATTGcc < 1:36397/117‑1 (MQ=255) gAAGGTGATGCCGCTGTATCAGGCTGCCGCCAAGCCGTAAATGCCTGAATCCTGGGGCTGCATGGCAGCCCCCCCGGTTTTCCCTTTACCCAATCCAGCCACTGGCCTTCATTGCCGAATAGACGGCCACGATTGCCAGTACGAAGAAc > 8:273442/1‑149 (MQ=255) tGATGCCGCTGTATCAGGCTGCCGCCAAGCCGTAAATGCCTGAATCCTGGGGCTGCATGGCAGCCCCCCCGGTTTTCCCTTTACCCAATCCAGCCACTGGCCTTCATTGCCGAATAGACGACCACGATTGCCAGTACGAAGAACGCCGt < 1:19923/149‑1 (MQ=255) gATGCCGCTGTATCAGGCTGCCGCCAAGCCGTAAATGCCTGAATCCTGGGGCTGCATGGCAGCCCCCCCGGTTTTCCCTTTACCCAATCCAGCCACTGGCCTTCATTGCCGAATAGACGGCCACGATTGCCAGTACGAAGAACGCCGtt < 4:156039/149‑1 (MQ=255) aTGCCGCTGTATCAGGCTGCCGCCAAGCCGTAAATGCCTGAATCCTGGGGCTGCATGGCAGCCCCCCCGGTTTTCCCTTTACCCAATCCAGCCACTGGCCTTCATTGCCGAATAGACGGCCACGATTGCCAGTACGAAGAACGCCGtt < 4:150974/148‑1 (MQ=255) tCAGGCTGCCGCCAAGCCGTAAATGCCTGAATCCTGGGGCTGCATGGCAGCCCCCCCGGTTTTCCCTTTACCCAATCCAGCCACTGGCCTTCATTGCCGAATAGACGGCCACGATTGCCAGTACGAAGAACGCCGTTGCCGCCAggcgg < 7:133139/149‑1 (MQ=255) tCAGGCTGCCGCCAAGCCGTAAATGCCTGAATCCTGGGGCTGCATGGCAGCCCCCCCGGTTTTCCCTTTACCCAATACACCCACAGGCCTTCATTGCCGAATAGACGGCCACGATTGCCAGTACGAAGAACGCCGTTGCCGCCAggcgg > 1:173878/1‑149 (MQ=255) cAGGCTGCCGCCAAGCCGTAAATGCCTGAATCCTGGGGCTGCATGGCAGCCCCCACGGTTTTCCCTTTACCCAATCCAGCCACTGGCCTTCATAGCCGAATAGACGGCCACGATTGCCAGTACGAAGAACGCCGTTGCCGCCAggcgg < 2:122823/148‑1 (MQ=255) gCTGCCGCCAAGCCGTAAATGCCTGAATCCTGGGGCTGCATGGCAGCCCCCCCGGTTTTCCCTTTACCCAATCCAGCCACTGGCCTTCATTGCCGAATAGACGGCCACGATTGCCAGTACGAAGAACGCCGTTGCCGCCAGGCGGCGaa < 2:22595/149‑1 (MQ=255) cTGCCGCCAAGCCGTAAATGCCTGAATCCTGGGGCTGCATGGCAGCCCCCCCGGTTTTCCCTTTACCCAATCCAGCCAGTGGCCTTCATTGCCGAATAGACGGCCACGATTGCCAGTACGAAGAACGCCGTTTCCGCCAGGCGGCGAAt < 6:312317/149‑1 (MQ=255) gccAAGCCGTAAATGCCTGAATCCTGGGGCTGCATGGCAGCCCCCCCGGTTTTCCCTTTACCCAATCCAGCCACTGGCCTTCATTGCCGAATAGACGGCCACGATTGCCAGTACGAAGAACGCCGTTGCCGCCAGGCGGCGAATCAGCg > 3:220819/1‑149 (MQ=255) ccAAGCCGTAAATGCCTGAATCCTGGGGCTGCATGGCAGCCCCCCCGGTTTTCCCTTTACCCAATCCAGCCACTGGCCTTCATTGCCGAATAGACGGCCACGATTGCCAGTACGAAGAACGCCGTTGCCGCCAGGCGGCGAATCAGCGt > 8:79212/1‑149 (MQ=255) cAAGCCGTAAATGCCTGAATCCTGGGGCTGCATGGCAGCCCCCCCGGTTTTCCCTTTACCCAATCCAGCCACTGGCCTTCATTGCCGAATAGACGGCCACGATTGCCAGTACGAAGAACGCCGTTGCCGCCAGGCGGCGAATCAGCGTc < 8:34051/149‑1 (MQ=255) aTGCCTGAATCCTGGGGCTGCATGGCAGCCCCCCCGGTTTTCCCTTTACCCAATCCAGCCACTGGCCTTCATTGCCGAATAGACGGCCACGATTGCCAGTACGAAGAACGCCGTTGCCGCCAGGCGGCGAATCAGCGTCAACGGCAGtt > 3:226645/1‑149 (MQ=255) ccTTAATCCTGGGGCGGCATGGAAGCCCCCCCGG‑TTTCCCTTTACCCAATCCTGCCACTGGCCTTCATTGCCGAATAGACGGCCACGATTGCCAGTACGAAGAACGCCGTTGCCGCCAGGCGGCGAATCAGCGTCAACGGCAGTTTGt < 1:282825/148‑1 (MQ=255) ccTGAATCCTGGGGCTGCATGGCAGCCCCCCCGGTTTTCCCTTTACCCAATCCAGCCACTGGCCTTCATTGCCGAATAGACGGCCACGATTGCCAGTACGAAGAACGCCGTTGCCGCCAGGCGGCGAATCAGCGTCAACGGCAGTTTGt < 7:79212/149‑1 (MQ=255) tGAATCCTGGGGCTGCATGGCAGCCCCCCCGGTTTTCCCTTTACCCAATCCAGCCACTGGCCTTCATTGCCGAATAGACGGCCACGATTGCCAGTACGAAGAACGCCGTTGCCGCCAGGCGGCGAATCAGCGTCAACGGCAgacaaact > 3:103726/1‑142 (MQ=255) tGAATCCTGGGGCTGCATGGCAGCCCCCCCGGTTTTCCCTTTACCCAATCCAGCCACTGGCCTTCATTGCCGAATAGACGGCCACGATTGCCAGTACGAAGAACGCCGTTGCCGCCAGGCGGCGAATCAGCGTCAACGGCAGTTTGTCt > 6:265659/1‑149 (MQ=255) ccgggggggCTGCCATGCAGCCCCCCCGGTTTTCCCTTTACCCAATCCAGCCACTGGCCTTCATTGCCGAATAGACGGCCACGATTGCCAGTACGAAGAACGCCGTTGCCGCCAGGCGGCGAATCAGCGTCAACGGCAGTTTGTCTGcc > 3:49586/6‑149 (MQ=255) tCCTGGGGCTGCATGGCAGCCCCCCCGGTTTTCCCTTTACCCAATCCAGCCACTGGCCTTCATTGCCGAATAGACGGCCACGATTGCCAGTACGAAGAACGCCGTTGCCGCCAGGCGGCGAATCAGCGTCAACGGCAGTTTGTCTGCcg > 2:234421/1‑149 (MQ=255) tCCTGGGGCTGCATGGCAG‑CCCCCCGGTTTTCCCTTTACCCAATCCAGCCACTGGCCTTCATTGCCGAATAGACGGCCACGATTGCCAGTACGAAGAACGCCGTTGCCGCCAGGCGGCGAATCAGCGTCAACGGCAGTTTGTCTGCcgc > 5:180429/1‑149 (MQ=255) ccTGGGGCTGCATGGCAGCCCCCCCGGTTTTCCCTTTACCCAATCCAGCCACTGGCCTTCATTGCCGAATAGACGGCCACGATTGCCAGTACGAAGAACGCCGTTGCCGCCAGGCGGCGAATCAGCGTCAACGGCAGTTTGTCTGCcgc > 5:147418/1‑149 (MQ=255) ggCTGCATGGCAGCCCCCCCGGTTTTCCCTTTACCCAATCCAGCCACTGGCCTTCATTGCCGAATAGACGGCCACGATTGCCAGTACGAAGAACGCCGTTGCCGCCAGGCGGCGAATCAGCGTCAACGGCAGTTTGTCTGCCGCGAAGt < 3:316251/149‑1 (MQ=255) gCATGGCAGCCCCCCCGGTTTTCCCTTTACCCAATCCAGCCACTGGCCTTCATTGCCGAATAGACGGCCACGATTGCCAGTACGAAGAACGCCGTTGCCGCCAGGCGGCGAATCAGCGTCAACGGCAGTTTGTCTGCCGCGAAGTTAcc > 4:80523/1‑149 (MQ=255) | CAAGGCTTCCGAAGGTGCACCGCCTGAGTTCATGAGTACTCACCCGGCGTCCGCGAGCCGCATTGCTTCGCTGCAG‑GCGGCGATTCCGAAGGTGATGCCGCTGTATCAGGCTGCCGCCAAGCCGTAAATGCCTGAATCCTGGGGCTGCATGGCAGCCCCCCCGGTTTTCCCTTTACCCAATCCAGCCACTGGCCTTCATTGCCGAATAGACGGCCACGATTGCCAGTACGAAGAACGCCGTTGCCGCCAGGCGGCGAATCAGCGTCAACGGCAGTTTGTCTGCCGCGAAGTTACC > NC_002947/875135‑875429 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |