Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_002947 883,194 G→A 7.5% R266H (CGC→CAC)  PP_0766 → hypothetical protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_002947883,1940GA 7.5% 153.2 / 3.0 53R266H (CGC→CAC) PP_0766hypothetical protein
Reads supporting (aligned to +/- strand):  ref base G (22/27);  new base A (2/2);  total (24/29)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.97e-01

AACCCAGGCAACATCCTGTTCTACTTCAAGCAGGAAGTTACTGCGCCTGCGCGCCTGGCCGGGACTGTGCTGCTGGTGCACGAAACCCTCGACCAGGTGAAGGAGCCGCGCAAGGCGTGGATCTACAACGCCGGTCAACGCCGTGTGCGCCAGGCACCGCAAGTGTCGTATGACGGCCCAGGTACCGCCGCCGACGGCCTGCGTACGTCGGACAACCTGGACATGTTCAACGGTGCACCGGACCGTTATGACTGGAAGCTGGAAGGCAAGAAGGAACTGTACATCGCCTCCAACG  >  NC_002947/883046‑883340
                                                                                                                                                    |                                                                                                                                                  
aacCCAGGCAACATCCTGTTCTACTTCAAGCAGGAAGTTACTGCGCCTGCGCGCCTGGCCGGGACTGTGCTGCTGGTGCACGAAACCCTCGACCAGGTGAAGGAGCCGCGCAAGGCGTGGATCTACAACGCCGGTCAACGCCGTGTgcg                                                                                                                                                    >  8:221369/1‑149 (MQ=255)
 acCCAGGCAACATCCTGTTCTACTTCAAGCAGGAAGTTACTGCGCCTGCGCGCCTGGCCGGGACTGTGCTGCTGGTGCACGAAACCCTCGACCAGGTGAAGGAGCCGCGCAAGGCGTGGATCTACAACGCCGGTCAACGCCGTGTgcgc                                                                                                                                                   <  2:55114/149‑1 (MQ=255)
   ccAGGCAACATCCTGTTCTACTTCAAGCAGGAAGTTACTGCGCCTGCGCGCCTGGCCGGGACTGTGCTGCTGGTGCACGAAACCCTCGACCAGGTGAAGGAGCCGCGCAAGGCGTGGATCTACAACGCCGGTCAACGCCGTGTgcgc                                                                                                                                                   >  4:292080/1‑147 (MQ=255)
                              cAGGAAGTTACTGCGCCTGCGCGCCTGGCCGGGACTGTGCTGCTGGTGCACGAAACCCTCGACCAGGTGAAGGAGCCGCGCAAGGCGTGGATCTACAACGCCGGTCAACGCCGTGTGCGCCAGGCACCGCAAGTGTCGTATGACGGccc                                                                                                                      <  4:198839/149‑1 (MQ=255)
                              cAGGAAGTTACTGCGCCTGCGCGCCTGGCCGGGACTGTGCTGCTGGTGCACGAAACCCTCGACCAGGTGAAGGAGCCGCGCAAGGCGTGGATCTACAACGCCGGTCAACGCCGTGTGCGCCAGGCACCGCAAGTGTCGTATGACGGccc                                                                                                                      <  8:66908/149‑1 (MQ=255)
                               aGGAAGTTACTGCGCCTGCGCGCCTGGCCGGGACTGTGCTGCTGGTGCACGAAACCCTCGACCAGGTGAATGAGCCGCGCAAGGCGTGGATCTACAACGCCGGTCAACGCCGTGTGCGCCAGGCACCGCAAGTGTCGTATGACGGccc                                                                                                                      <  2:300129/148‑1 (MQ=255)
                                      tACTGCGCCTGCGCGCCTGGCCGGGACTGTGCTGCTGGTGCACGAAACCCTCGACCAGGTGAAGGAGCCGCGCAAGGCGTGGATCTACAACGCCGGTCAACGCCGTGTGCGCCAGGCACCGCAAGTGTCGTATGACGGCCCAGGTAccg                                                                                                              >  7:141188/1‑149 (MQ=255)
                                         tgcgcctgcgcGCCTGGCCGGGACTGTGCTGCTGGTGCACGAAACCCTCGACCAGGTGAAGGAGCCGCGCAAGGCGTGGATCTACAACGCCGGTCAACGCCGTGTGCGCCAGGCACCGCATGTGTCGTATGACGGCCCAGGTAccgccg                                                                                                           >  7:166602/1‑149 (MQ=255)
                                           cgcctgcgcGCCTGGCCGGGACTGTGCTGCTGGTGCACGAAACCCTCGACCAGGTGAAGGAGCCGCGCAAGGCGTGGATCTACAACGCCGGTCAACGCCGTGTGCGCCAGGCAcc                                                                                                                                           <  6:79636/115‑1 (MQ=255)
                                           cgcctgcgcGCCTGGCCGGGACTGTGCTGCTGGTGCACGAAACCCTCGACCAGGTGAAGGAGCCGCGCAAGGCGTGGATCTACAACGCCGGTCAACGCCGTGTGCGCCAGGCAcc                                                                                                                                           >  5:79636/1‑115 (MQ=255)
                                              ctgcgcGCCTGGCCGGGACTGTGCTGCTGGTGCACGAAACCCTCGACCAGGTGAAGGAGCCGCGCAAGGCGTGGATCTACAACGCCGGTCAACGCCGTGTGCGCCAGGCACCGCAAGTGTCGTATGACGGCCCAGGTACCGCCGCCGAc                                                                                                      <  7:264856/149‑1 (MQ=255)
                                                gcgcgcCTGGCCGGGACTGTGCTGCTGGTGCACGAAACCCTCGACCAGGTGAAGGAGCCGCGCAAGGCGTGGATCTACAACGCCGGTCAACGCCGTGTGCGCCAGGCACCGCAAGTGTCGTATGACGGCCCAGGTACCGCCGCCGACgg                                                                                                    >  4:135125/1‑149 (MQ=255)
                                                 cgcgcCTGGCCGGGACTGTGCTGCTGGTGCACGAAACCCTCGACCAGGTGAAGGAGCCGCGCAAGGCGTGGATCTACAACGCCGGTCAACGCCGTGTGCGCCAGGCACCGCAAGTGTCGTATGACGGCCCAGGTACCGCCGCCGACg                                                                                                     <  5:85010/147‑1 (MQ=255)
                                                 cgcgcCTGGCCGGGACTGTGCTGCTGGTGCACGAAACCCTCGACCAGGTGAAGGAGCCGCGCAAGGCGTGGATCTACAACGCCGGTCAACGCCGTGTGCGCCAGGCACCGCAAGTGTCGTATGACGGCCCAGGTACCGCCGCCGACg                                                                                                     <  5:43418/147‑1 (MQ=255)
                                                      cTGGCCGGGACTGTGCTGCTGGTGCACGAAACCCTCGACCAGGTGAAGGAGCCGCGCAAGGCGTGGATCTACAACGCCGGTCAACGCCGTGTGCGCCAGGCACCGCAAGTGTCGTATGACGGCCCAGGTACCGCCGCCGACGGc                                                                                                   <  3:58194/144‑1 (MQ=255)
                                                      cTGGCCGGGACTGTGCTGCTGGTGCACGAAACCCTCGACCAGGTGAAGGAGCCGCGCAAGGCGTGGATCTACAACGCCGGTCAACGCCGTGTGCGCCAGGCACCGCAAGTGTCGTATGACGGCCCAGGTACCGCCGCCGACGGc                                                                                                   >  4:58194/1‑144 (MQ=255)
                                                       tGGCCGGGACTGTGCTGCTGGTGCACGAAACCCTCGACCAGGTGAAGGAGCCGCGCAAGGCGTGGATCTACAACGCCGGCCAACGCCGTGTGCGCCAGGCACCGCAAGTGTCGTATGACGGCCCAGGTACCGCCGCCGACGGCCTGCg                                                                                              >  7:262323/1‑148 (MQ=255)
                                                         gCCGGGACTGTGCTGCTGGTGCACGAAACCCTCGACCAGGTGAAGGAGCCGCGCAAGGCGTGGATCTACAACGCCGGTCAACGCCGTGTGCGCCAGGCACCGCATGTGTCGTATGACGGCCCAGGTACCGCCGCCGACGGCCTGCGt                                                                                             <  8:166602/147‑1 (MQ=255)
                                                             ggACTGTGCTGCTGGTGCACGAAACCCTCGACCAGGTGAAGGAGCCGCGCAAGGCGTGGATCTACAACGCCGGTCAACGCCGTGTGCGCCAGGCACCGCAAGTGTCGTATGACGGCCCAGGTACCGCCGCCGACGGCCTGCGTACGTCg                                                                                       <  7:221369/149‑1 (MQ=255)
                                                               aCTGTGCTGCTGGTGCACGAAACCCTCGACCAGGTGAAGGAGCCGCGCAAGGCGTGGATCTACAACGCCGGTCAACGCCGTGTGCGCCAGGCACCGCAAGTGTCGTATGACGGCCCAGGTACCGCCGCCGACGGCCTGCGTACGTCGGa                                                                                     <  8:141188/149‑1 (MQ=255)
                                                                   tgctgcTGGTGCACGAAACCCTCGACCAGGTGAAGGAGCCGCGCAAGGCGTGGATCTACAACGCCGGTCAACGCCGTGTGCGCCAGGCACCGCAAGTGTCGTATGACGGCCCAGGTACCGCCGCCGACGGCCTGCGTACGTCg                                                                                       >  3:122781/1‑143 (MQ=255)
                                                                   tgctgcTGGTGCACGAAACCCTCGACCAGGTGAAGGAGCCGCGCAAGGCGTGGATCTACAACGCCGGTCAACGCCGTGTGCGCCAGGCACCGCAAGTGTCGTATGACGGCCCAGGTACCGCCGCCGACGGCCTGCGTACGTCg                                                                                       <  4:122781/143‑1 (MQ=255)
                                                                     ctgctgGTGCACGAAACCCTCGACCAGGTGAAGGAGCCGCGCAAGGCGTGGATCTACAACGCCGGTCAACGCCGTGTGCGCCAGGCACCGCAAGTGTCGTATGACGGCCCAGGTACCGCCGCCGACGGCCTGCGTACGTCGGACAACCt                                                                               >  7:129323/1‑149 (MQ=255)
                                                                       gctgGTGCACGAAACCCTCGACCAGGTGAAGGAGCCGCGCAAGGCGTGGATCTACAACGCCGGTCAACGCCGTGTGCGCCAGGCACCGCAAGTGTCGTATGACGGCCCAGGTACCGCCGCCGACGGCCTGCGTACGTCGGACAACCTg                                                                              >  1:136550/1‑148 (MQ=255)
                                                                        ctgGTGCACGAAACCCTCGACCAGGTGAAGGAGCCGCGCAAGGCGTGGATCTACAACGCCGGTCAACGCCGTGTGCGCCTGGCACCTCAAGTGTCGTATGACGGCCCAGGTACCGCCGCCGACGGCCTGCGTACGTCGGACAACCTGGa                                                                            <  8:124363/149‑1 (MQ=255)
                                                                        ctgGTGCACGAAACCCTCGACCAGGTGAAGGAGCCGCGCAAGGCGTGGATCTACAACGCCGGTCAACGCCGTGTGCGCCAGGCACCGCAAGTGTCGTATGACGGCCCAGGTACCGCCGCCGACGGCCTGCGTACGTCGGACAACCTGGa                                                                            <  4:218514/149‑1 (MQ=255)
                                                                           gTGCACGAAACCCCCGACCAGGTGAAGGAGCCGCGCAAGGCGTGGATCTACAACGCCGGTCAACGCCGTGTGCGCCAGGCACCGCAAGTGTCGTATGACGGCCCAGGTACCGCCGCCGACGGCCTGCGTACGTCGGACAACCTGGACAt                                                                         >  6:196633/1‑149 (MQ=255)
                                                                               aCGAAACCCTCGACCAGGTGAAGGAGCCGCGCAAGGCGTGGATCTACAACGCCGGTCAACGCCGTGTGCGCCAGGCACCGCAAGTGTCGTATGACGGCCCAGGTACCGCCGCCGACGGCCTGCGTACGTCGGACAACCTGGACATGtt                                                                      >  2:205407/1‑148 (MQ=255)
                                                                                 gAAACCCTCGACCAGGTGAAGGAGCCGCGCAAGGCGTGGATCTACAACGCCGGTCAACGCCGTGTGCGCCAGGCACCGCAAGTGTCGTATGACGGCCCAGGTACCGCCGCCGACGGCCTGCGTACGTCGGACAACCTGGACATGTTCaa                                                                   >  8:143114/1‑149 (MQ=255)
                                                                                     cccTCGACCAGGTGAAGGAGCCGCGCAAGGCGTGGATCTACAACGCCGGTCAACGCCGTGTGCGCCAGGCACCGCAAGTGTCGTATGACGGCCCAGGTACCGCCGCCGACGGCCTGCGTACGTCGGACAACCTGGACATGTTCAACGGt                                                               <  8:129323/149‑1 (MQ=255)
                                                                                      ccTCGACCAGGTGAAGGAGCCGCGCAAGGCGTGGATCTACAACGCCGGTCAACGCCGTGTGCGCCAGGCACCGCAAGTGTCGTATGACGGCCCAGGTACCGCCGCCGACGGCCTGCGTACGTCGGACAACCTGGACATGTTCAACGGTg                                                              >  6:269659/1‑149 (MQ=255)
                                                                                        tCGACCAGGTGAAGGAGCCGCGCAAGGCGTGGATCTACAACGCCGGTCAACGCCGTGTGCGCCAGGCACCGCAAGTGTCGTATGACGGCCCAGGTACCGCCGCCGACGGCCTGCGTACGTCGGACAACCTGGACATGTTCAACGGTGCa                                                            >  7:91990/1‑149 (MQ=255)
                                                                                        tCGACCAGGTGAAGGAGCCGCGCAAGGCGTGGATCTACAACGCCGGTCAACGCCGTGTGCGCCAGGCACCGCAAGTGTCGTATGACGGCCCAGGTACCGCCGCCGACGGCCTGCGTACGTCGGACAACCTGGACATGTTCAACGGTGCa                                                            >  5:323252/1‑149 (MQ=255)
                                                                                            ccAGGTGAAGGAGCCGCGCAAGGCGTGGATCTACAACGCCGGTCAACGCCGTGTGCGCCAGGCACCGCAAGTGTCGTATGACGGCCCAGGTACCGCCGCCGACGGCCTGCGTACGTCGGACAACCTGGACATGTTCAACGGTGCACCg                                                         >  1:272630/1‑148 (MQ=255)
                                                                                               ggTGAAGGAGCCGCGCAAGGCGTGGATCTACAACGCCGGTCAACGCCGTGTGCGCCAGGCACCGCAAGTGTCGTATGACGGCCCAGGTACCGCCGCCGACGGCCTGCGTACGTCGGACAACCTGGACATGTTCAACGGTGCACCGGAcc                                                     <  6:323252/149‑1 (MQ=255)
                                                                                                 tGAAGGAGCCGCGCAAGGCGTGGATCTACAACGCCGGTCAACGCCGTGTGCGCCAGGCACCGCAAGTGTCGTATGACGGCCCAGGTACCGCCGCCGACGGCCTGCGTACGTCGGACAACCTGGACATGTTCAACGGTGCACCGGACCGt                                                   <  5:269659/149‑1 (MQ=255)
                                                                                                  gAAGGAGCCGCGCAAGGCGTGGATCTACAACGCCGGTCAACGCCGTGTGCGCCAGGCACCGCAAGTGTCGTATGACGGCCCAGGTACCGCCGCCGACGGCCTGCGTACGTCGGACAACCTGGACATGTTCAACGGTGCACCGGACCGtt                                                  <  8:91990/149‑1 (MQ=255)
                                                                                                    aGGAGCCGCGCAAGGCGTGGATCTACAACGCCGGTCAACGCCGTGTGCGCCAGGCACCGCAAGTGTCGTATGACGGCCCAGGTACCGCCGCCGACGGCCTGCGTACGTCGGACAACCTTGACATGTTCAACGGTGCACCGGACCGTTAt                                                <  1:205407/149‑1 (MQ=255)
                                                                                                    aGGAGCCGCGCAAGGCGTGGATCTACAACGCCGGTCAACGCCGTGTGCGCCAGGCACCGCAAGTGTCGTATGACGGCCCAGGTACCGCCGCCGACGGCCTGCGTACGTCGGACAACCTGGACATGTTCAACGGTGCACCGGACCGTTAt                                                <  5:196633/149‑1 (MQ=255)
                                                                                                         ccGCGCAAGGCGTGGATCTACAACGCCGGTCAACGCCGTGTGCGCCAGGCACCGCAAGTGTCGTATGACGGCCCAGGTACCGCCGCCGACGGCCTGCGTACGTCGGACAACCTGGACATGTTCAACGGTGCACCGGACCGTTATGActg                                           >  8:248985/1‑149 (MQ=255)
                                                                                                          cgcgCAAGGCGTGGATCTACAACGCCGGCCAACGCCGTGTGCGCCAGGCACCGCAAGTGTCGTATGACGGCCCAGGTACCGCCGCCGACGGCCTGCGTACGTCGGACAACCTGGACATGTTCAACGGTGCACCGGACCGTTATGActgg                                          <  8:262323/149‑1 (MQ=255)
                                                                                                            cgcAAGGCGTGGATCTACAACGCCGGTCAACGCCGTGTGCGCCAGGCACCGCAAGTGTCGTATGACGGCCCAGGTACCGCCGCCGACGGCCTGCGTACGTCGGACAACCTGGACATGTTCAACGGTGCACCGGACCGTTATGActggaa                                        >  8:48958/1‑149 (MQ=255)
                                                                                                              cAAGGCGTGGATCTACAACGCCGGTCAACGCCGTGTGCGCCAGGCACCGCAAGTGTCGTATGACGGCCCAGGTACCGCCGCCGACGGCCTGCGTACGTCGGACAACCTGGACATGTTCAACGGTGCACCGGACCGTTATGActggaagc                                      >  4:326766/1‑149 (MQ=255)
                                                                                                                  gCGTGGATCTACAACGCCGGTCAACGCCGTGTGCGCCAGGCACCGCAAGTGTCGTATGACGGCCCAGGTACCGCCGCCGACGGCCTGCGTACGTCGGACAACCTGGACATGTTCAACGGTGCACCGGACCGTTATGActggaagctgg                                   >  4:46998/1‑148 (MQ=255)
                                                                                                                   cGTGGATCTACAACGCCGGTCAACGCCGTGTGCGCCAGGCACCGCAAGTGTCGTATGACGGCCCAGGTACCGCCGCCGACGGCCTGCGTACGTCGGACAACCTGGACATGTTCAACGGTGCACCGGACCGTTATGActggaagctggaa                                 <  2:278496/149‑1 (MQ=255)
                                                                                                                       gATCTACAACGCCGGTCAACGCCGTGTGCGCCAGGCACCGCAAGTGTCGTATGACGGCCCAGGTACCGCCGCCGACGGCCTGCGTACGTCGGACAACCTGGACATGTTCAACGGTGCACCGGACCGTTATGACTGGAAGCTGGAAGGc                              <  2:272630/148‑1 (MQ=255)
                                                                                                                            aCAACGCCGGTCAACGCCGTGTGCACCAGGCACCGCAAGTGTCGTATGACGGCCCAGGTACCGCCGCCGACGGCCTGCGTACGTCGGACAACCTGGACATGTTCAACGGTGCACCGGACCGTTATGACTGGAAGCTGGAAGGCaagaag                        >  7:251218/1‑149 (MQ=255)
                                                                                                                            aCAACGCCGGTCAACGCCGTGTGCACCAGGCACCGCAAGTGTCGTATGACGGCCCAGGTACCGCCGCCGACGGCCTGCGTACGTCGGACAACCTGGACATGTTCAACGGTGCACCGGACCGTTATGACTGGAAGCTGGAAGGCaagaag                        >  7:255887/1‑149 (MQ=255)
                                                                                                                             cAACGCCGGTCAACGCCGTGTGCGCCAGGCACCGCAAGTGTCGTATGACGGCCCAGGTACCGCCGCCGACGGCCTGCGTACGTCGGACAACCTGGACATGTTCAACGGTGCACCGGACCGTTATGACTGGAAGCTGGAAGGCaaga                          <  3:292080/146‑1 (MQ=255)
                                                                                                                               aCGCCGGTCAACGCCGTGTGCGCCAGGCACCGCAAGTGTCGTATGACGGCCCAGGTACCGCCGCCGACGGCCTGCGTACGTCGGACAACCTGGACATGTTCAACGGTGCACCGGACCGTTATGACTGGAAGCTGGAAGGCAAGAAGGaa                     <  5:138899/149‑1 (MQ=255)
                                                                                                                                   cGGTCAACGCCGTGTGCGCCAGGCACCGCAAGTGTCGTATGACGGCCCAGGTACCGCCGCCGACGGCCTGCGTACGTCGGACAACCTGGACATGTTCAACGGTGCACCGGACCGTTATGACTGGAAGCTGGAAGGCAAGAAGGAACTGt                 <  7:143114/149‑1 (MQ=255)
                                                                                                                                     gTCAACGCCGTGTGCGCCAGGCACCGCAAGTGTCGTATGACGGCCCAGGTACCGCCGCCGACGGCCTGCGTACGTCGGACAACCTGGACATGTTCAACGGTGCACCGGACCGTTATGACTGGAAGCTGGAAGGCAAGAAGGAACTGTa                >  4:228177/1‑148 (MQ=255)
                                                                                                                                        aaCGCCGTGTGCGCCAGGCACCGCAAGTGTCGTATGACGGCCCAGGTACCGCCGCCGACGGCCTGCGTACGTCGGACAACCTGGACATGTTCAACGGTGCACCGGACCGTTATGACTGGAAGCTGGAAGGCAAGAAGGAACTGTACAt             <  3:228177/148‑1 (MQ=255)
                                                                                                                                        aaCGCCGTGTGCGCCAGGCACCGCAAGTGTCGTATGACGGCCCAGGTACCGCCGCCGACGGCCTGCGTACGTCGGACAACCTGGACATGTTCAACGGTGCACCGGACCGTTATGACTGGAAGCTGGAAGGCAAGAAGGAACTGTACATc            >  5:32400/1‑149 (MQ=255)
                                                                                                                                            ccGTGTGCACCAGGCACCGCAAGTGTCGTATGACGGCCCAGGTACCGCCGCCGACGGCCTGCGTACGTCGGACAACCTGGACATGTTCAACGGTGCACCGGACCGTTATGACTGGAAGCTGGAAGGCAAGAAGGAACTGTACATCGCCt        <  8:255887/149‑1 (MQ=255)
                                                                                                                                            ccGTGTGCACCAGGCACCGCAAGTGTCGTATGACGGCCCAGGTACCGCCGCCGACGGCCTGCGTACGTCGGACAACCTGGACATGTTCAACGGTGCACCGGACCGTTATGACTGGAAGCTGGAAGGCAAGAAGGAACTGTACATCGCCt        <  8:251218/149‑1 (MQ=255)
                                                                                                                                                  gcgcCAGGCACCGCAAGTGTCGTATGACGGCCCAGGTACCGCCGCCGACGGCCTGCGTACGTCGGACAACCTGGACATGTTCAACGGTGCACCGGACCGTTATGACTGGAAGCTGGAAGGCAAGAAGGAACTGTACATCGCCTCCAACg  >  2:46825/1‑149 (MQ=255)
                                                                                                                                                    |                                                                                                                                                  
AACCCAGGCAACATCCTGTTCTACTTCAAGCAGGAAGTTACTGCGCCTGCGCGCCTGGCCGGGACTGTGCTGCTGGTGCACGAAACCCTCGACCAGGTGAAGGAGCCGCGCAAGGCGTGGATCTACAACGCCGGTCAACGCCGTGTGCGCCAGGCACCGCAAGTGTCGTATGACGGCCCAGGTACCGCCGCCGACGGCCTGCGTACGTCGGACAACCTGGACATGTTCAACGGTGCACCGGACCGTTATGACTGGAAGCTGGAAGGCAAGAAGGAACTGTACATCGCCTCCAACG  >  NC_002947/883046‑883340

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: