Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 983,587 | T→A | 8.0% | intergenic (+45/‑44) | iscX → / → ndk | cysteine desulfurase activity regulator/nucleoside diphosphate kinase |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 983,587 | 0 | T | A | 8.0% | 168.6 / 3.5 | 58 | intergenic (+45/‑44) | iscX/ndk | cysteine desulfurase activity regulator/nucleoside diphosphate kinase |
Reads supporting (aligned to +/- strand): ref base T (31/22); new base A (3/2); total (34/24) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.94e-01 |
GGTGCTGGCATTGCCAGAGTTCAGCGACGATCCGTCACGCGGCGGTGAGAAAGTGCTCGAGGCAATCCAGGCCGCCTGGATCGACGAAGCCGACTAAGCGTCACTTGCAGGTT‑AGGCAATCCCCCGGAACCCGCGTATAATTCGCGGGTTTAATTTTTCGTAACACTCATATTCTGGAGTTTTCCATGGCTGTTCAACGTACTTTCTCCATCATCAAGCCTGACGCTGTTGCCAAAAACGTCATCGGCAAGATCACCACTCGCTTCGAAGAAGCCGGCCTGAAAATCGT > NC_002947/983446‑983734 | ggTGCTGGCATTGCCAGAGTTCAGCGACGATCCGTCACGCGGCGGTGAGAAAGTGCTCGAGGCAATCCAGGCCGCCTGGATCGACGAAGCCGACTAAGCGTCACTTGCAGGTT‑AGGCAATCCCCCGGAACCCGCGTATAATTCGCgg < 7:198376/147‑1 (MQ=255) gTGCTGGCATTGCCAGAGTTCAGCGACGATCCGTCACGCGGCGGTGAGAAAGTGCTCGAGGCAATCCAGGCCGCCTGGATCGACGAAGCCGACTAAGCGTCACTTGCAGGTT‑AGGCAATCCCCCGGAACCCGCGTATAATTCGCGGGtt > 2:235325/1‑149 (MQ=255) tGCTGGCACTGCCAGAGTTCAGCGACGATCCGTCACGCGGCGGTGAGAAAGTGCTCGAGGCAATCCAGGCCGCCTGGATCGACGAAGCCGACTAAGCGTCACTTGCAGGTT‑AGGCAATCCCCCGGAACCCGCGAATTATACGCGGGttc < 7:251140/149‑2 (MQ=255) cTGGCATTGCCAGAGTTCAGCGACGATCCGTCACGCGGCGGTGAGAAAGTGCTCGAGGCAATCCAGGCCGCCTGGATCGACGAAGCCGACTAAGCGTCACTTGCAGGTT‑AGGCAATCCCCCGGAACCCGCGTATAATTCGCGGGTTTaa < 6:196906/149‑1 (MQ=255) gCATTGCCAGAGTTCAGCGACGATCCGTCACGCGGCGGTGAGAAAGTGCTCGAGGCAATCCAGGCCGCCTGGATCGACGAAGCCGACTAAGCGTCACTTGCAGGTT‑AGGCAATCCCCCGGAACCCGCGAATTATACGCGGGttccgg < 4:252489/147‑5 (MQ=255) aTTGCCAGAGTTCAGCGACGATCCGTCACGCGGCGGTGAGAAAGTGCTCGAGGCAATCCAGGCCGCCTGGATCGACGAAGCCGACTAAGCGTCACTTGCAGGTT‑AGGCAATCCCCCGGAACCCGCGTATAATTCGCGGGTTTAAttttt > 3:152646/1‑149 (MQ=255) ttGCCAGAGTTCAGCGACGATCCGTCACGCGGCGGTGAGAAAGTGCTCGAGGCAATCCAGGCCGCCTGGATCGACGAAGCCGACTAAGCGTCACTTGCAGGTT‑AGGCAATCCCCCGGAACCCGCGTATAATTCGCGGGTTTAATTTTTc < 1:235325/149‑1 (MQ=255) ttGCCAGAGTTCAGCGACGATCCGTCACGCGGCGGTGAGAAAGTGCTCGAGGCAATCCAGGCCGCCTGGATCGACGAAGCCGACTAAGCGTCACTTGCAGGTT‑AGGCAATCCCCCGGAACCCGCGTATAATTCGCGGGTTTAATTTTTc < 2:11886/149‑1 (MQ=255) ccAGAGTTCAGCGACGATCCGTCACGCGGCGGTGAGAAAGTGCTCGAGGCAATCCTGGCCGCCTGGATCGACGAAGCCGACTAAGCGTCACATGCAGGTT‑AGGCAATCCCCCGGAACCCGCGTATAATTCGCGGGTTTAATTTTTCGt < 7:100572/148‑1 (MQ=255) aGCGACGATCCGTCACGCGGCGGTGAGAAAGTGCTCGAGGCAATCCAGGCCGCCTGGATCGACGAAGCCGACTAAGCGTCACTTGCAGGTT‑AGGCAATCCCCCGGAACCCGCGTATAATTCGCGGGTTTAATTTTTCGTAACACTCata > 1:324710/1‑149 (MQ=255) aGCGACGATCCGTCACGCGGCGGTGAGAAAGTGCTCGAGGCAATCCAGGCCGCCTGGATCGACGAAGCCGACTAAGCGTCACTTGCAGGTT‑AGGCAATCCCCCGGAACCCGCGTATAATTCGCGGGTTTAATTTTTCGTAACACTCata > 3:312202/1‑149 (MQ=255) gCGACGATCCGTCACGCGGCGGTGAGAAAGTGCTCGAGGCAATCCAGGCCGCCTGGATCGACGAAGCCGACTAAGCGTCACTTGCAGGTT‑AGGCAATCCCCCGGAACCCGCGTATAATTCGCGGGTTTAATTTTTCGTAACACTCatat > 7:189007/1‑149 (MQ=255) gacgaTCCGTCACGCGGCGGTGAGAAAGTGCTCGAGGCAATCCAGGCCGCCTGGATCGACGAAGCCGACTAAGCGTCACTTGCAGGTT‑AGGCAATCCCCCGGAACCCGCGTATAATTCGCGGGTTTAATTTTTCGTAACACTCATATTc < 6:122686/149‑1 (MQ=255) cgaTCCGTCACGCGGCGGTGAGAAAGTGCTCGAGGCAATCCAGGCCGCCTGGATCGACGAAGCCGACTAAGCGTCACTTGCAGGTT‑AGGCAATCCCCCGGAACCCGCGTATAATTCGCGGGTTTAATTTTTCGTAACACTCATATTCTg > 7:105174/1‑149 (MQ=255) aTCCGTCACGCGGCGGTGAGAAAGTGCTCGAGGCAATCCAGGCCGCCTGGATCGACGAAGCCGACTAAGCGTCACTTGCAGGTT‑AGGCAATCCCCCGGAACCCGCGTATAATTCGCGGGTTTAATTTTTCGTAACACTCATATTCTGGa < 5:137180/149‑1 (MQ=255) ggcggTGAGAAAGTGCTCGAGGCAATCCAGGCCGCCTGGATCGACGAAGCCGACTAAGCGTCACTTGCAGGTT‑AGGCAATCCCCCGGAACCCGCGTATAATTCGCGGGTTTAATTTTTCGTAACACTCATATTCTGGAGTTTTCCATgg < 4:152646/149‑1 (MQ=255) ggcggTGAGAAAGTGCTCGAGGCAATCCAGGCCGCCTGGATCGACGAAGCCGACTAAGCGTCACTTGCAGGTT‑AGGCAATCCCCCGGAACCCGCGTATAATTCGCGGGTTTAATTTTTCGTAACACTCATATTCTGGAGTTTTCCATgg < 8:105174/149‑1 (MQ=255) aaGTTCTCGATGCAATCCAGGCCGGGTGGATCGACGAAGCCGACTAAGCGTCACTTGGAGGTT‑AGGCAATCCCCCGGAACCCGCGTATTATTCGCGGGTTTAATTTTTCGTAACACTCATATTCTGGAGTTTTCCATGGCTGTTCAAc < 2:324710/148‑1 (MQ=255) tCGAGGCAATCCAGGCCGCCTGGATCGACGAAGCCGACTAAGCGTCACTTGCAGGTT‑AGGCAATCCCCCGGAACCCGCGTATAATTCGCGGGTTTAATTTTTCGTAACACTCATATTCTGGAGTTTTCCATGGCTGTTCAACGTACtt > 2:327032/1‑148 (MQ=255) gAGGCAATCCAGGCCGCCTGGATCGACGAAGCCGACTAAGCGTCACTTGCAGGTTGAGGCATTCCCCCGGAACCCGCGTTAAATAGCCGGGTTTAATTTTTGGTAACAATCTTATTATGTAGTTTACCATGGATGTTAAAGGTCATTtc > 1:267748/1‑149 (MQ=255) gAGGCAATCCAGGCCGCCTGGATCGACGAAGCCGACTAAGCGTCACTTGCAGGTT‑AGGCAATCCCCCGGAACCCGCGTATAATTCGCGGGTTTAATTTTTCGTAACACTCATATTCTGGAGTTTTCCATgg < 5:109944/131‑1 (MQ=255) gAGGCAATCCAGGCCGCCTGGATCGACGAAGCCGACTAAGCGTCACTTGCAGGTT‑AGGCAATCCCCCGGAACCCGCGTATAATTCGCGGGTTTAATTTTTCGTAACACTCATATTCTGGAGTTTTCCATgg > 6:109944/1‑131 (MQ=255) aaTCCAGGCCGCCTGGATCGACGAAGCCGACTAAGCGTCACTTGCAGGTT‑AGGCAATCCCCCGGAACCCGCGTATAATTCGCGGGTTTAATTTTTCGTAACACTCATATTCTGGAGTTTTCCATGGCTGTTCAACGTACTTTCTCcat > 4:65540/1‑148 (MQ=255) aaTCCAGGCCGCCTGGATCGACGAAGCCGACTAAGCGTCACTTGCAGGTT‑AGGCAATCCCCCGGAACCCGCGTATAATTCGCGGGTTCAATTTTTCGTAACACTCATAtt > 7:280361/1‑110 (MQ=255) aaTCCAGGCCGCCTGGATCGACGAAGCCGACTAAGCGTCACTTGCAGGTT‑AGGCAATCCCCCGGAACCCGCGTATAATTCGCGGGTTCAATTTTTCGTAACACTCATAtt < 8:280361/110‑1 (MQ=255) cAGGCCGCCTGGATCGACGAAGCCGAATAAGCGTCACTTGCAGGTT‑AGGCAATCCCCCGGAACCCGCGTATAATTCGCGGGTTTAATTTTTCGTAACACTCATATTCTGGAGTTTTCCATGGCTGTTCAACGTACTTTCTCCatcatc > 2:211447/1‑148 (MQ=255) aGGCCGCCTGGATCGACGAAGCCGACTAAGCGTCACTTGCAGGTT‑AGGCAATCCCCCGGAACCCGCGTATAATTCGCGGGTTTAATTTTTCGTAACACTCATATTCTGGAGTTTTCCATGGCTGTTCAACGTACTTTCTCCatcatc < 2:73546/147‑1 (MQ=255) aGGCCGCCTGGATCGACGAAGCCGACTAAGCGTCACTTGCAGGTT‑AGGCAATCCCCCGGAACCCGCGTATAATTCGCGGGTTTAATTTTTCGTAACACTCATATTCTGGAGTTTTCCATGGCTGTTCAACGTACTTTCTCCatcatc > 7:208253/1‑147 (MQ=255) aGGCCGCCTGGATCGACGAAGCCGACTAAGCGTCACTTGCAGGTT‑AGGCAATCCCCCGGAACCCGCGTATAATTCGCGGGTTTAATTTTTCGTAACACTCATATTCTGGAGTTTTCCATGGCTGTTCAACGTACTTTCTCCATCATCaa > 1:73546/1‑149 (MQ=255) gccgccTGGATCGACGAAGCCGACTAAGCGTCACTTGCAGGTT‑AGGCAATCCCCCGGAACCCGCGTATAATTCGCGGGTTTAATTTTTCGTAACACTCATATTCTGGAGTTTTCCATGGCTGTTCAACGTACTTTCTCCATCATCAAGc > 8:277681/1‑149 (MQ=255) gacgaAGCCGACTAAGCGTCACTTGCAGGTT‑AGGCAATCCCCCGGAACCCGCGTATAATTCGCGGGTTTAATTTTTCGTAACACTCATATTCTGGAGTTTTCCATGGCTGTTCAACGTACTTTCTCCATCATCAAGCCTGACGCTGtt < 1:164824/148‑1 (MQ=255) gacgaAGCCGACTAAGCGTCACTTGCAGGTT‑AGGCAATCCCCCGGAACCCGCGTATAATTCGCGGGTTTAATTTTTCGTAACACTCATATTCTGGAGTTTTCCATGGCTGTTCAACGTACTTTCTCCATCATCAAGCCTGACGCTGtt > 2:164824/1‑148 (MQ=255) acgaAGCCGACTAAGCGTCACTTGCAGGTT‑AGGCAATCCCCCTGAACCCGCGTATAATTCGCGGGTTTAATTTTTCGTAACACTCATATTTTGGAGTTTTCCATGGCTGTTCAACGTACTTTCTCCATCATCAAGCCTGACGTTGTTGc > 5:243673/1‑149 (MQ=255) acgaAGCCGACTAAGCGTCACTTGCAGGTT‑AGGCAATCCCCCGGAACCCGCGTATAATTCGCGGGTTTAATTTTTCGTAACACTCATATTCTGGAGTTTTCCATGGCTGTTCAACGTACTTTCTCCATCATCAAGCCTGACGCTGTTGc > 3:199259/1‑149 (MQ=255) acgaAGCCGACTAAGCGTCACTTGCAGGTT‑AGGCAATCCCCCGGAACCCGCGTATAATTCGCGGGTTTAATTTTTCGTAACACTCATATTCTGGAGTTTTCCATGGCTGTTCAACGTACTTTCTCCATCATCAAGCCTGACGCTGTTGc > 4:324408/1‑149 (MQ=255) acgaAGCCGACTAAGCGTCACTTGCAGGTT‑AGGCAATCCCCCGGAACCCGCGTATAATTCGCGGGTTTAATTTTTCGTAACACTCATATTCTGGAGTTTTCCATGGCTGTTCAACGTACTTTCTCCATCATCAAGCCTGACGCTGTTGc < 4:199259/149‑1 (MQ=255) aCTAAGCGTCACTTGCAGGTT‑ATGCAATCCCCCGGAACCCGCGTATAATTCGCGGGTTTAATTTTTCGTAACACTCATATTCTGGAGTTTTCCATGGCTGTTCAACGTACTTTCTCCATCATCAAGCCTGACGCTGTTGCCAAAAACg > 7:213874/1‑148 (MQ=255) aGCGTCACTTGCAGGTT‑AGGCAATCCCCCGGAACCCGCGTATAATTCGCGGGTTTAATTTTTCGTAACACTCATATTCTGGAGTTTTCCATGGCTGTTCAACGTACTTTCTCCATCATCAAGCCTGACTCTGTTGCCAAAAACGTCAt < 1:211447/148‑1 (MQ=255) aGCGTCACTTGCAGGTT‑AGGCAATCCCCCGGAACCCGCGTATAATTCGCGGGTTTAATTTTTCGTAACACTCATATTCTGGAGTTTTCCATGGCTGTTCAACGTACTTTCTCCATCATCAAGCCTGACGCTGTTGCCAAAAACGTCAt < 3:65540/148‑1 (MQ=255) cGTCACTTGCAGGTT‑AGGCAATCCCCCGGAACCCGCGTATAATTCGCGGGTTTAATTTTTCGTAACACTCATATTCTGGAGTTTTCCATGGCTGTTCAACGTACTTTCTCCATCATCAAGCCTGACGCTGTTGCCAAAAACGTCATCgg > 7:81567/1‑149 (MQ=255) gTCACTTGCAGGTT‑AGGCAATCCCCCGGAACCCGCGTATAATTCGCGGGTTTAATTTTTCGTAACACTCATATTCTGGAGTTTTCCATGGCTGTTCAACGTACTTTCTCCATCATCAAGCCTGACGCTGCTGCCAAAAACGTCATCgg > 1:285879/1‑148 (MQ=255) ttGCAGGTT‑AGGCAATCCCCCGGAACCCGCGTATAATTCGCGGGTTTAATTTTTCGTAACACTCATATTCTGGAGTTTTCCATGGCTGTTCAACGTACTTTCTCCATCATCAAGCCTGACGCTGTTGCCAAAAACGTCATCGGCAAGa > 6:249067/1‑148 (MQ=255) gCAGGTT‑AGGCAATCCCCCGGAACCCGCGTATAATTCGCGGGTTTAATTTTTCGTAACACTCATATTCTGGAGTTTTCCATGGCTGTTCAACGTACTTTCTCCATCATCAAGCCTGACGCTGTTGCCAAAAACGTCATCgg < 5:10468/141‑1 (MQ=255) gCAGGTT‑AGGCAATCCCCCGGAACCCGCGTATAATTCGCGGGTTTAATTTTTCGTAACACTCATATTCTGGAGTTTTCCATGGCTGTTCAACGTACTTTCTCCATCATCAAGCCTGACGCTGTTGCCAAAAACGTCATCgg > 6:10468/1‑141 (MQ=255) aGGTT‑AGGCAATCCCCCGGAACCCGCGTATAATTCGCGGGTTTAATTTTTCGTAACACTCATATTCTGGAGTTTTCCATGGCTGTTCAACGTACTTTCTCCATCATCAAGCCTGACGCTGTTGCCAAAAACGTCATCGGCAAGATcac > 1:18149/1‑148 (MQ=255) aGGCAATCCCCCGGAACCCGCGTATAATTCGCGGGTTTAATTTTTCGTAACACTCATATTCTGGAGTTTTCCATGGCTGTTCAACGTACTTTCTCCATCATCAAGCCTGACGCTGTTGCCAAAAACGTCATCGGCAAGATCACCACTc < 2:267748/148‑1 (MQ=255) gCAATCCCCCGGAACCCGCGTATAATTCGCGGGTTTAATTTTTCGTAACACTCATATTCTGGAGTTTTCCATGGCTGTTCAACGTACTTtct < 6:284318/92‑1 (MQ=255) gCAATCCCCCGGAACCCGCGTATAATTCGCGGGTTTAATTTTTCGTAACACTCATATTCTGGAGTTTTCCATGGCTGTTCAACGTACTTtct > 5:284318/1‑92 (MQ=255) gCAATCCCCCGGAACCCGCGTATAATTCGCGGGTTTAATTTTTCGTAACACTCATATTCTGGAGTTTTCCATGGCTGTTCAACGTACTTTCTCCATCATCAAGCCTGACGCTGTTGCCAAAAACGTCATCGGCAAGATCACCACTCGCt > 6:354277/1‑149 (MQ=255) gCAATCCCCCGGAACCCGCGTATAATTCGCGGGTTTAATTTTTCGTAACACTCATATTCTGGAGTTTTCCATGGCTGTTCAACGTACTTTCTCCATCATCAAGCCTGACGCTGTTGCCAAAAACGTCATCGGCAAGATCACCACTCGCt > 5:236979/1‑149 (MQ=255) aaTCCCCCGGAACCCGCGTATAATTCGCGGGTTTAATTTTTCGTAACACTCATATTCTGGAGTTTTCCATGGCTGTTCAACGTACTTTCTCCATCATCAAGCCTGACGCTGTTGCCAAAAACGTCATCGGCAAGATCACCACTCGCTTc < 5:249067/149‑1 (MQ=255) tCCCCCGGAACCCGCGTATAATTCGCGGGTTTAATTTTTCGTAACACTCATATTCTGGAGTTTTCCATGGCTGTTCAACGTACTTTCTCCATCATCAAGCCTGACGCTGTTGCCAAAAACGTCATCGGCAAGATCACCACTCGCTTCg > 1:140761/1‑148 (MQ=255) cccGGAACCCGCGTATAATTCGCGGGTTTAATTTTTCGTAACACTCATATTCTGGAGTTTTCCATGGCTGTTCAACGTACTTTCTCCATCATCAAGCCTGACGCTGTTGCCAAAAACGTCATCGGCAAGATcac < 7:194938/134‑1 (MQ=255) cccGGAACCCGCGTATAATTCGCGGGTTTAATTTTTCGTAACACTCATATTCTGGAGTTTTCCATGGCTGTTCAACGTACTTTCTCCATCATCAAGCCTGACGCTGTTGCCAAAAACGTCATCGGCAAGATcac > 8:194938/1‑134 (MQ=255) ccGGAACCCGCGTATAATTCGCGGGTTTAATTTTTCGTAACACTCATATTCTGGAGTTTTCCATGGCTGTTCAACGTACTTTCTCCATCATCAAGCCTGACGCTGTTGCCAAAAACGTCATCGGCAAGATCACCACTCGCTTCgaag > 2:82359/1‑147 (MQ=255) aaaCCCGCGAATTATACGCGGGTTTAATTTTTCGTAACACTCATATTCTGGAGTTTTCCATGGCTGTTCAACGTACTTTCTCCATCATCAAGCCTGACGCTGTTGCCAAAAACGTCATCGGCAAGATCACCACTCGCTTCGAAGAAGcc > 8:150194/2‑149 (MQ=255) cccGCGAATTATACGCGGGTTTAATTTTTCGTAACACTCATATTCTGGAGTTTTCCATGGCTGTTCAACGTACTTTCTCCATCATCAAGCCTGACGCTGTTGCCAAAAACGTCATCGGCAAGATAACAACTCGCTTCGAAGAAGCCGGc > 7:98756/1‑149 (MQ=255) taATTCGCGGGTTTAATTTTTCGTAACACTCATATTCTGGAGTTTTCCATGGCTGTTCAACGTACTTTCTCCATCATCAAGCCTGACGCTGTTGCCAAAAACGTCATCGGCAAGATCACCACTCGCTTCGAAGAAGCCGGCCTGAAAAt > 4:158405/1‑149 (MQ=255) ttCGCGGGTTTAATTTTTCGTAACACTCATATTCTGGAGTTTTCCATGGCTGTTCAACGTACTTTCTCCATCATCAAGCCTGACGCTGTTGCCAAAAACGTCATCGGCAAGATCACCACTCGCTTCGAAGAAGCCGGCCTGAAAATCGt < 7:246169/149‑1 (MQ=255) ttCGCGGGTTTAATTTTTCGTAACACTCATATTCTGGAGTTTTCCATGGCTGTTCAACGTACTTTCTCCATCATCAAGCCTGACGCTGTTGCCAAAAACGTCATCGGCAAGATCACCACTCGCTTCGAAGAAGCCGGCCTGAAAATCGt > 1:143239/1‑149 (MQ=255) ttCGCGGGTTTAATTTTTCGTAACACTCATATTCTGGAGTTTTCCATGGCTGTTCAACGTACTTTCTCCATCATCAAGCCTGACGCTGTTGCCAAAAACGTCATCGGCAAGATCACCACTCGCTTCGAAGAAGCCGGCCTGAAAATCGt > 8:246169/1‑149 (MQ=255) | GGTGCTGGCATTGCCAGAGTTCAGCGACGATCCGTCACGCGGCGGTGAGAAAGTGCTCGAGGCAATCCAGGCCGCCTGGATCGACGAAGCCGACTAAGCGTCACTTGCAGGTT‑AGGCAATCCCCCGGAACCCGCGTATAATTCGCGGGTTTAATTTTTCGTAACACTCATATTCTGGAGTTTTCCATGGCTGTTCAACGTACTTTCTCCATCATCAAGCCTGACGCTGTTGCCAAAAACGTCATCGGCAAGATCACCACTCGCTTCGAAGAAGCCGGCCTGAAAATCGT > NC_002947/983446‑983734 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |