Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 1,066,338 | T→C | 8.7% | S88G (AGC→GGC) | PP_0924 ← | hypothetical protein |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 1,066,338 | 0 | T | C | 8.7% | 156.1 / 4.9 | 57 | S88G (AGC→GGC) | PP_0924 | hypothetical protein |
Reads supporting (aligned to +/- strand): ref base T (26/26); new base C (2/3); total (28/29) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.87e-01 |
GTTCGCCCCAAAGCACGGCGATGGTACCGCCGTTGCGGTAGTCGGGGGCGACGCAGGTACGGCCCAGTTCGAGGATCGGGCCTTGCAGCTGCAA‑CAGGCCGTGCAGGCTGAATTCTTCTTCGCTGTAGAAACGGCCCAGGCTGCTGGCGGCCTGGTGATCGAGCAGGCGGGTGGTGGCAACCAGTTCGCCGGTGCTCAGGTCGCGTACACCAATGTGGCGGCAGTGCACGTCGTAGTCGTCCATGTCCAGGCCCTGCTCGGCACCTTTGAGCTTGGCCTTGAATTCTGCGCT > NC_002947/1066194‑1066485 | gTTCGCCCCAAAGCACGGCGATGGTACCGCCGTTGCGGTAGTCGGGGGCGACGCAGGTACGGCCCAGTTCGAGGATCGGGCCTTGCAGCTGCAA‑CAGGCCGTGCAGGCTGAATTCTTCTTCGCTGTAGAAACGGCCCAGGCTGCTggcg > 6:343224/1‑149 (MQ=255) ccccAAAGCACGGCGATGGTACCGCCGTTGCGGTAGTCGGGGGCGACGCAGGTACGGCCCAGTTCGAGGATCGGGCCTTGCAGCTGCAA‑CAGGCCGTGCAGGCTGAATTCTTCTTCGCTGTAGAAACGGCCCAGGCTGCTGGCGGCCTg < 5:286665/149‑1 (MQ=255) cccAAAGCACGGCGATGGTACCGCCGTTGCGGTAGTCGGGGGCGACGCAGGTACGGCCCAGTTCGAGGATCGGGCCTTGCAGCTGCAA‑CAGGCCGTGCAGGCTGAATTCTTCTTCGCTGTAGAAACGGCCCAGGCTGCTGGCGGCCTgg > 5:176999/1‑149 (MQ=255) cccAAAGCACGGCGATGGTACCGCCGTTGCGGTAGTCGGGGGCGACGCAGGTACGGCCCAGTTCGAGGATCGGGCCTTGCAGCTGCAA‑CAGGCCGTGCAGGCTGAATTCTTCTTCGCTGTAGAAACGGCCCAGGCTGCTGGCGGCCTgg > 1:91715/1‑149 (MQ=255) cccAAAGCACGGCGATGGTACCGCCGTTGCGGTAGTCGGGGGCGACGCAGGTACGGCCCAGTTCGAGGATCGGGCCTTGCAGCTGCAA‑CAGGCCGTGCAGGCTGAATTCTTCTTCGCTGTAGAAACGGCCCAGGCTGCTGGCGGCCTgg > 4:282179/1‑149 (MQ=255) ccAAAGCACGGCGATGGTACCGCCGTTGCGGTAGTCGGGGGCGACGCAGGTACGGCCCAGTTCGAGGATCGGGCCTTGCAGCTGCAA‑CAGGCCGTGCAGGCTGAATTCTTCTTCGCTGTAGAAACGGCCCAGGCTGCTGGCGGCCTGGt < 7:265321/149‑1 (MQ=255) ccAAAGCACGGCGATGGTACCGCCGTTGCGGTAGTCGGGGGCGACGCAGGTACGGCCCAGTTCGAGGATCGGGCCTTGCAGCTGCAA‑CAGGCCGTGCAGGCTGAATTCTTCTTCGCTGTAGAAACGGCCCAGGCTGCTGGCGGCCTGGt > 2:2538/1‑149 (MQ=255) cAAAGCACGGCGATGGTACCGCCGTTGCGGTAGTCGGGGGCGACGCAGGTACGGCCCAGTTCGAGGATCGGGCCTTGCAGCTGCAA‑CAGGCCGTGCAGGCTGAATTCTTCTTCGCTGTAGAAACGGCCCAGGCTGCTGGCGGCCTGGTg < 5:105477/149‑1 (MQ=255) aaaGCACGGCGATGGTACCGCCGTTGCGGTAGTCGGGGGCGACGCAGGTACGGCCCAGTTCGAGGATCGGGCCTTGCAGCTGCAACCAGGCCGTGCAGGCTGAATTCTTCTTCGCTGTAGAAACGGCCCAGGCCGCCAGCAGCCTgggc < 1:271987/149‑3 (MQ=255) aGCACGGCGATGGTACCGCCGTTGCGGTAGTCGGGGGCGACGCAGGTACGGCCCAGTTCGAGGATCGGGCCTTGCAGCTGCAA‑CAGGCCGTGCAGGCTGAATTCTTCTTCGCTGTAGAAACGGCCCAGGCCGCCAGCAGCCTgggccgt < 2:44758/149‑6 (MQ=255) cGGCGATGGTACCGCCGTTGCGGTAGTCGGGGGCGACGCAGGTACGGCCCAGTTCGAGGATCGGGCCTTGCAGCTGCAA‑CAGGCCGTGCAGGCTGAATTCTTCTTCGCTGTAGAAACGGCCCAGGCTGCTGGCGGCCTGGTGATCGAGc < 2:91715/149‑1 (MQ=255) cGGCGATGGTACCGCCGTTGCGGTAGTCGGGGGCGACGCAGGTACGGCCCAGTTCGAGGATCGGGCCTTGCAGCTGCAA‑CAGGCCGTGCAGGCTGAATTCTTCTTCGCTGTAGAAACGGCCCAGGCTGCTGGCGGCCTGGTGATCGAGc < 3:282179/149‑1 (MQ=255) cGATGGTACCGCCGTTGCGGTAGTCGGGGGCGACGCAGGTACGGCCCAGTTCGAGGATCGGGCCTTGCAGCTGCAA‑CAGGCCGTGCAGGCTGAATTCTTCTTCGCTGTAGAAACGGCCCAGGCTGCTGGCGGCCTGGTGATCGAGCAgg > 7:278364/1‑149 (MQ=255) cGACGCAGGTACGGCCCAGTTCGAGGATCGGGCCTTGCAGCTGCAA‑CAGGCCGTGCAGGCTGAATTCTTCTTCGCTGTAGAAACGGCCCAGGCTGCTGGCGGCCTGGTGATCGAGCAGGCGGGTGGTGGCAACCAGTTCGCCGGTGCTc < 7:96053/149‑1 (MQ=255) gACGCAGGTACGGCCCAGTTCGAGGATCGGGCCTTGCAGCTGCAA‑CAGGCCGTGCAGGCTGAATTCTTCTTCGCTGTAGAAACGGCCCAGGCTGCTGGCGGCCTGGTGATCGAGCAGGCGGGTGGTGGCAACCAGTTCGCCGGTGCTCa < 7:124859/149‑1 (MQ=255) aCGCAGGTACGGCCCAGTTCGAGGATCGGGCCTTGCAGCTGCAA‑CAGGCCGTGCAGGCTGAATTCTTCTTCGCTGTAGAAACGGCCCAGGCTGCTGGCGGCCTGGTGATCGAGCAGGCGGGTGGTGGCAACCAGTTCGCCGGTGCTCAg > 4:299517/1‑149 (MQ=255) cAGGTACGGCCCAGTTCGAGGATCGGGCCTTGCAGCTGCAA‑CAGGCCGTGCAGGCTGAATTCTTCTTCGCTGTAGAAACGGCCCAGGCTGCTGGCGGCCTGGTGATCGAGCAGGCGGGTGGTGGCAACCAGTTCGCCGGTGCTCAGGTc < 8:278364/149‑1 (MQ=255) cAGGTACGGCCCAGTTCGAGGATCGGGCCTTGCAGCTGCAA‑CAGGCCGTGCAGGCTGAATTCTTCTTCGCTGTAGAAACGGCCCAGGCTGCTGGCGGCCTGGTGATCGAGCAGGCGGGTGGTGGCAACCAGTTCGCCGGTGCTCAGGTc < 4:124578/149‑1 (MQ=255) cGGCCCAGTTCGAGGATCGGGCCTTGCAGCTGCAA‑CAGGCCGTGCAGGCTGAATTCTTCTTCGCTGTAGAAACGGCCCAGGCTGCTGGCGGCCTGGTGATCGAGCAGGCGGGTGGTGGCAACCAGTTCGCCGGTGCTCAGGTCGCGTa < 4:141292/148‑1 (MQ=255) ggCCCAGTTCGAGGATCGGGCCTTGCAGCTGCAA‑CAGGCCGTGCAGGCTGAATTCTTCTTCGCTGTAGAAACGGCCCAGGCTGCTGGCGGCCTGGTGATCGAGCAGGCGGGTGGTGGCAACCAGTTCTCCGGTg < 8:127114/134‑1 (MQ=255) ggCCCAGTTCGAGGATCGGGCCTTGCAGCTGCAA‑CAGGCCGTGCAGGCTGAATTCTTCTTCGCTGTAGAAACGGCCCAGGCTGCTGGCGGCCTGGTGATCGAGCAGGCGGGTGGTGGCAACCAGTTCGCCGGTg > 7:127114/1‑134 (MQ=255) cccAGTTCGAGGATCGGGCCTTGCAGCTGCAA‑CAGGCCGTGCAGGCTGAATTCTTCTTCGCTGTAGAAACGGCCCAGGCTGCTGGCGGCCTGGTGAt < 7:143251/97‑1 (MQ=255) cccAGTTCGAGGATCGGGCCTTGCAGCTGCAA‑CAGGCCGTGCAGGCTGAATTCTTCTTCGCTGTAGAAACGGCCCAGGCTGCTGGCGGCCTGGTGAt > 8:143251/1‑97 (MQ=255) cccAGTTCGAGGATCGGGCCTTGCAGCTGCAA‑CAGGCCGTGCAGGCTGAATTCTTCTTCGCTGTAGAAACGGCCCAGGCTGCTGGCGGCCTGGTGATCGAGCAGGCGGGTGGTGGCAACCAGTTCGCCg < 4:274311/129‑1 (MQ=255) cccAGTTCGAGGATCGGGCCTTGCAGCTGCAA‑CAGGCCGTGCAGGCTGAATTCTTCTTCGCTGTAGAAACGGCCCAGGCTGCTGGCGGCCTGGTGATCGAGCAGGCGGGTGGTGGCAACCAGTTCGCCg > 3:274311/1‑129 (MQ=255) ccAGTTCGAGGATCGGGCCTTGCAGCTGCAA‑CAGGCCGTGCAGGCTGAATTCTTCTTCGCTGTAGAAACGGCCCAGGCTGCTGGCGGCCTGGTGATCGAGCAGGCGGGTGGTGGCAACCAGTTCGCCGGTGCTCAGGTCGCGTACAcc > 2:29454/1‑148 (MQ=255) aGTTCGAGGATCGGGCCTTGCAGCTGCAA‑CAGGCCGTGCAGGCTGAATTCTTCTTCGCTGTAGAAACGGCCCAGGCTGCTGGCGGCCTGGTGATCGAGCAGGCGGGTGGTCGCAACCAGTTCGCCGGTGCTCAGGTCGCGTACACCAAt < 1:29454/149‑1 (MQ=255) gTTCGAGGATCGGGCCTTGCAGCTGCAA‑CAGGCCGTGCAGGCTGAATTCTTCTTCGCTGTAGAAACGGCCCAGGCTGCTGGCGGCCTGGTGATCGAGCAGGCGGGTGGTGGCAACCAGTTCGCCGGTGCTCAGGTCGCGTACACCAAtg > 4:213773/1‑149 (MQ=255) gAGGATCGGGCCTTGCAGCTGCAA‑CAGGCCGTGCAGGCTGAATTCTTCTTCGCTGTAGAAACGGCCCAGGCTGCTGGCGGCCTGGTGATCGAGCAGGCGGGTGGTGGCAACCAGTTCGCCGGTGCTCAGGTCGCGTACACCAATGTggc < 5:343224/149‑1 (MQ=255) tCGGGCCTTGCAGCTGCAA‑CAGGCCGTGCAGGCTGAATTCTTCTTCGCTGTAGAAACGGCCCAGGCTACTGGCGGCCTGGTGATCGAGCAGGCGGGTGGTGGCAACCAGTTCGCCGGTGCTCAGGTcgc > 3:218046/1‑129 (MQ=255) tCGGGCCTTGCAGCTGCAA‑CAGGCCGTGCAGGCTGAATTCTTCTTCGCTGTAGAAACGGCCCAGGCTACTGGCGGCCTGGTGATCGAGCAGGCGGGTGGTGGCAACCAGTTCGCCGGTGCTCAGGTcgc < 4:218046/129‑1 (MQ=255) cAA‑CAGGCCGTGCAGGCTGAATTCTTCTTCGCTGTAGAAACGGCCCAGGCTGCTGGCGGCCTGGTGATc > 1:131036/1‑69 (MQ=255) cAA‑CAGGCCGTGCAGGCTGAATTCTTCTTCGCTGTAGAAACGGCCCAGGCTGCTGGCGGCCTGGTGATc < 2:131036/69‑1 (MQ=255) cAA‑CAGGCCGTGCAGGCTGAATTCTTCTTCGCTGTAGAAACGGCCCAGGCTGCTGGCGGCCTGGTGATCGAGCAGGCGGGTGGTGGCAACCAGTTCGCCGGTGCTCAGGTCGCGTACACCAATGTGGCGGCAGTGCACGTCGTAgtcgt < 3:213773/149‑1 (MQ=255) cAA‑CAGGCCGTGCAGGCTGAATTCTTCTTCGCTGTAGAAACGGCCCAGGCTGCTGGCGGCCTGGTGATCGAGCAGGCGGGTGGTGGCAACCAGTTCGCCGGTGCTCAGGTCGCGTACACCAATGTGGCGGCAGTGCACGTCGTAgtcgt > 6:54354/1‑149 (MQ=255) a‑CAGGCCGTGCAGGCTGAATTCTTCTTCGCTGTAGAAACGGCCCAGGCTGCTGGCGGCCTGGTGATCGAGCAGGCGGGTGGTGGCAACCAGTTCGCCGGTGCTCAGGTCGCGTACACCAATGTGGCGGCAGTGCACGTCGTAGTCGTcc < 5:130918/149‑1 (MQ=255) cAGGCCGTGCAGGCTGAATTCTTCTTCGCTGTAGAAACGGCCCAGGCTGCTGGCGGCCTGGTGATCGAGCAGGCGGGTGGTGGCAACCAGTTCGCCGGTGCTCAGGTCGCGTACACCAATGTGGCGGCAGTGCACGTCGTAGTCGTCCa > 4:320118/1‑149 (MQ=255) cAGGCTGAATTCTTCTTCGCTGTAGAAACGGCCCAGGCTGCTGGCGGCCTGGTGATCGAGCAGGCGGGTGGTGGCAACCAGTTCGCCGGTGCTCAGGTCGCGTACACCAATGTGGCGGCAGTGCACGTCGTAGTCGTCCATGTCCAGGc > 7:254570/1‑149 (MQ=255) ggCTGAATTCTTCTTCGCTGTAGAAACGGCCCAGGCTGCTGGCGGCCTGGTGATCGAGCAGGCGGGTGGTGGCAACCAGTTCGCCGGTGCTCAGGTCGCGTACACCAATGTGGCGGCAGTGCACGTCGTAGTCGTCCATGTCCAGGccc > 6:55026/1‑149 (MQ=255) gCTGAATTCTTCTTCGCTGTAGAAACGGCCCAGGCTGCTGGCGGCCTGGTGATCGAGCAGGCGGGTGGTGGCAACCAGTTCGCCGGTGCTCAGGTCGCGTACACCAATGTGGCGGCAGTGCACGTCGTAGTCGTCCATGTCCAGGCCCt < 4:323481/149‑1 (MQ=255) tGAATTCTTCTTCGCTGTAGAAACGGCCCAGGCTGCTGGCGGCCTGGTGATCGAGCAGGCGGGTGGTGGCAACCAGTTCGCCGGTGCTCAGGTCGCGTACACCAATGTGGCGGCAGTGCACGTCGTAGTCGTCCATGTCCAGGCCCTGc > 5:74935/1‑149 (MQ=255) aaTTCTTCTTCGCTGTAGAAACGGCCCAGGCTGCTGGCGGCCTGGTGATCGAGCAGGCGGGTGGTGGCAACCAGTTCGCCGGTGCTCAGGTCGCGTACACCAATGTGGCGTCAGTGCACGTCGTAGTCGTCCATGTCCAGGCCCTGCTc < 6:176999/149‑1 (MQ=255) aaTTCTTCTTCGCTGTAGAAACGGCCCAGGCTGCTGGCGGCCTGGTGATCGAGCAGGCGGGTGGTGGCAACCAGTTCGCCGGTGCTCAGGTCGCGTACACCAATGTGGCGGCAGTGCACGTCGTAGTCGTCCATGTCCAGGCCCTGc < 3:299517/147‑1 (MQ=255) aaTTCTTCTTCGCTGTAGAAACGGCCCAGGCTGCTGGCGGCCTGGTGATCGAGCAGGCGGGTGGTGGCAACCAGTTCGCCGGTGCTCAGGTCGCGTACACCAATGTGGCGGCAGTGCACGTCGTAGTCGTCCATGTCCAGGCCCTGCTc < 1:2538/149‑1 (MQ=255) ttcGCTGTAGAAACGGCCCAGGCTGCTGGCGGCCTGGTGATCGAGCAGGCGGGTGGTGGCAACCAGTTCGCCGGTGCTCAGGTCGCGTACACCAATGTGGCGGCAGTGCACGTCGTAGTCGTCCATGTCCAGGCCCTGCTCGGCACCtt > 5:301179/1‑149 (MQ=255) gCTGTAGAAACGGCCCAGGCTGCTGGCGGCCTGGTGATCGAGCAGGCGGGTGGTGGCAACCAGTTCGCCGGTGCTCAGGTCGCGTACACCAATGTGGCGGCAGTGCACGTCGTAGTCGTCCATGTCCAGGCCCTGCTCGGCACCttt > 6:239308/1‑147 (MQ=255) tGTAGAAACGGCCCAGGCTGCTGGCGGCCTGGTGATCGAGCAGGCGGGTGGTGGCAACCAGTTCGCCGGTGCTCAGGTCGCGTaca < 8:185201/86‑1 (MQ=255) tGTAGAAACGGCCCAGGCTGCTGGCGGCCTGGTGATCGAGCAGGCGGGTGGTGGCAACCAGTTCGCCGGTGCTCAGGTCGCGTaca > 7:185201/1‑86 (MQ=255) tGTAGAAACGGCCCAGGCTGCTGGCGGCCTGGTGATCGAGCAGGCGGGTGGTGGCAACCAGTTCGCCGGTGCTCAGGTCGCGTACACCAATGTGGCGGCAGTGCACGTCGTAGTCGTCCATGTCCAGGCCCTGCTCGGCACCTTTGAGc > 5:140710/1‑149 (MQ=255) tAGAAACGGCCCAGGCTGCTGGCGGCCTGGTGATCGAGCAGGCGGGTGGTGGCAACCAGTTCGCCGGTGCTCAGGTCGCGTACACCAATGTGGCGGCAGTGCACGTCGTAGTCGTCCATGTCCAGGCCCTGCTCGGCACCTTTGAGCtt > 1:332397/1‑149 (MQ=255) gAAACGGCCCAGGCTGCTGGCGGCCTGGTGATCGAGCAGGCGGGTGGTGGCAACCAGTTCGCCGGTGCTCAg < 3:139660/72‑1 (MQ=255) gAAACGGCCCAGGCTGCTGGCGGCCTGGTGATCGAGCAGGCGGGTGGTGGCAACCAGTTCGCCGGTGCTCAg > 4:139660/1‑72 (MQ=255) aaaCGGCCCAGGCTGCTGGCGGCCTGGTGATCGAGCAGGCGGGTGGTGGCAACCAGTTCGCCGGTGCTCAGGTCGCGTACACCAATGTGGCGGCAGTGCACGTCGTAGTCGTCCATGTCCAGGCCCTGCTCGGCACCTTTGAGCTTgg < 4:29195/148‑1 (MQ=255) aaaCGGCCCAGGCTGCTGGCGGCCTGGTGATCGAGCAGGCGGGTGGTGGCAACCAGTTCGCCGGTGCTCAGGTCGCGTACACCAATGTGGCGGCAGTGCACGTCGTAGTCGTCCATGTCCAGGCCCTGCTCGGCACCTTTGAGCTTgg > 3:29195/1‑148 (MQ=255) gatcaccAGGCCGCCAGCAGCCTGGTGATCGAGCAGGCGGGTGGTGGCAACCAGTTCGCCGGTGCTCAGGTCGCGTACACCAATGTGGCGGCAGTGCACGTCGTAGTCGTCCATGTCCAGGCCCTGCTc < 3:93037/124‑1 (MQ=255) gatcaccAGGCCGCCAGCAGCCTGGTGATCGAGCAGGCGGGTGGTGGCAACCAGTTCGCCGGTGCTCAGGTCGCGTACACCAATGTGGCGGCAGTGCACGTCGTAGTCGTCCATGTCCAGGCCCTGCTc > 4:93037/6‑129 (MQ=255) tcaccAGGCCGCCAGCAGCCTGGTGATCGAGCAGGCGGGTGGTGGCAACCAGTTCGCCGGTGCTCAGGTCGCGTACACCAATGTGGCGGCAGTGCACGTCGTAGTCGTCCATGTCCAGGCCCTGCTCGGCACCTTTGAGCTTGGCCtt > 6:174666/4‑148 (MQ=255) gctgctGGCGGCCTGGTGATCGAGCAGGCGGGTGGTGGCAACCAGTTCGCCGGTGCTCAGGTCGCGTACACCAATGTGGCGGCAGTGCACGTCGTAGTCGTCCATGTCCAGGCCCTGCTCGGCACCTTTGAGCTTGGCCTTGAATTCTg < 5:54354/149‑1 (MQ=255) ctgGCGGCCTGGTGATCGAGCAGGCGGGTGGTGGCAACCAGTTCGCCGGTGCTCAGGTCGCGTACACCAATGTGGCGGCAGTGCACGTCGTAGTCGTCCATGTCCAGGCCCTGCTCGGCACCTTTGAGCTTGGCCTTGAATTCTGCGCt < 5:55026/149‑1 (MQ=255) | GTTCGCCCCAAAGCACGGCGATGGTACCGCCGTTGCGGTAGTCGGGGGCGACGCAGGTACGGCCCAGTTCGAGGATCGGGCCTTGCAGCTGCAA‑CAGGCCGTGCAGGCTGAATTCTTCTTCGCTGTAGAAACGGCCCAGGCTGCTGGCGGCCTGGTGATCGAGCAGGCGGGTGGTGGCAACCAGTTCGCCGGTGCTCAGGTCGCGTACACCAATGTGGCGGCAGTGCACGTCGTAGTCGTCCATGTCCAGGCCCTGCTCGGCACCTTTGAGCTTGGCCTTGAATTCTGCGCT > NC_002947/1066194‑1066485 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |