Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 1,232,735 | C→T | 10.7% | intergenic (‑23/+194) | glpD ← / ← glpR | aerobic glycerol‑3‑phosphate dehydrogenase/DNA‑binding transcriptional repressor GlpR |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 1,232,735 | 0 | C | T | 10.7% | 146.2 / 7.2 | 56 | intergenic (‑23/+194) | glpD/glpR | aerobic glycerol‑3‑phosphate dehydrogenase/DNA‑binding transcriptional repressor GlpR |
Reads supporting (aligned to +/- strand): ref base C (25/25); new base T (4/2); total (29/27) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 6.71e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.03e-01 |
CTTCAAGCCGCGACCAGCGGCGTCGGCAGCGATGCCCACGCCATTGATGCCACCGCCGATTACGGCAAGGTCATAGCAGTTGGCTGTTGGGGGCTGGGACGAAACTGGCTGGGACACGGG‑CAAGGCCTCCTGAGGCTGTTCACATCGAATGTGAACATTGATGTTCGTTTGCGAAAATATTAGCGCAACAGAACGCCGGTCGCCAGTCAGTCTCTATAGAAAAAACTGATCAAATGACAATGAAGTGAACATTTACGAAAATTCAGGGGGTACGGCTTGGGTGAGGGGGC > NC_002947/1232590‑1232879 | cTTCAAGCCGCGACCAGCGGCGTCGGCAGCGATGCCCACGCCATTGATGCCACCGCCGATTACGGCAAGGTCATAGCAGTTGGCTGTTGGGGGCTGGGACGAAACTGGCTGGGACACGGG‑CAAGGCCTCCTGAGGCTGTTCACATCGaa > 2:36659/1‑149 (MQ=255) aaGCCGCGACCAGCGGCGTCGGCAGCGATGCCCACGCCATTGATGCCACCGCCGATTACGGCAAGGTCATAGGAGTTGGCTGTTGGGGGCTGGGACGAAACTGGCTGGGACACGGGCCAAGGCCTCCTGAGGCTGTTCACATCGAAtgt < 1:36659/149‑1 (MQ=255) aaGCCGCGACCAGCGGCGTCGGCAGCGATGCCCACGCCATTGATGCCACCGCCGATTACGGCAAGGTCATAGCAGTTGGCTGTTGGGGGCTGGGACGAAACTGGCTGGGACACGGG‑CAAGGCCTCCTGAGGCTGTTCACATCGAAtgt > 5:71626/1‑148 (MQ=255) gcgACCAGCGGCGTCGGCAGCGATGCCCACGCCATTGATGCCACCGCCGATTACGGCAAGGTCATAGCAGTTGGCTGTTGGGGGCTGGGACGAAACTGGCTGGGACACGGG‑CAAGGCCTCCTGAGGCTGTTCACATTCGATGTGAAc > 8:42793/1‑147 (MQ=255) gcgACCAGCGGCGTCGGCAGCGATGCCCACGCCATTGATGCCACCGCCGATTACGGCAAGGTCATAGCAGTTGGCTGTTGGGGGCTGGGACGAAACTGGCTGGGACACGGG‑CAAGGCCTCCTGAGGCTGTTCACATTCGATGTGAAc < 7:42793/147‑1 (MQ=255) cgACCAGCGGCGTCGGCAGCGATGCCCACGCCATTGATGCCACCGCCGATTACGGCAAGGTCATAGCAGTTGGCTGTTGGGGGCTGGGACGAAACTGGCTGGGACACGGG‑CAAGGCCTCCTGAGGCTGTTCACATCAAATGTGAACAtt < 8:280272/149‑1 (MQ=255) cgACCAGCGGCGTCGGCAGCGATGCCCACGCCATTGATGCCACCGCCGATTACGGCAAGGTCACAGCAGTTGGCTGTTGGGGGCTGGGACGAAACTGGCTGGGACACGGG‑CAAGGCCTCCTGAGGCTGTTCACATCGAATGTGAACAtt < 7:90821/149‑1 (MQ=255) gACCAGCGGCGTCGGCAGCGATGCCCACGCCATTGATGCCACCGCCGATTACGGCAAGGTCATAGCAGTTGGCTGTTGGGGGCTGGGACGAAACTGGCTGGGACACGGG‑CAAGGCCTCCTGAGGCTGTTCACATCGAATGTGAACATTg < 5:312437/149‑1 (MQ=255) gcggcgTCGGCAGCGATGCCCACGCCATTGATGCCACCGCCGATTACGGCAAGGTCATAGCAGTTGGCTGTTGGGGGCTGGGACGAAACTGGCTGGGACACGGG‑CAAGGCCTCCTGAGGCTGTTCACATCGAATGTGAACATTGATGtt > 8:53742/1‑149 (MQ=255) atggcgTGGGCATCGCTGCCGACGCCATTGATGCCACCGCCGATTACGGCAAGGTCATAGCAGTTGGCTGTTGGGGGCTGGGACGAAACTGGCTGGGACACGGG‑CAAGGCCTCCTGAGGCTGTTCACATCGAATGTGAACATTGATGtt > 6:167122/3‑149 (MQ=255) cgTCGGCAGCGATGCCCACGCCATTGATGCCACCGCCGATTACGGCAAGGTCATAGCAGTTGGCTGTTGGGGGCTGGGACGAAACTGGCTGGGACACGGG‑CAAGGCCTCCTGAGGCTGTTCACATCGAATGTGAACATTGATGTTCGtt < 7:111028/149‑1 (MQ=255) tCGGCAGCGATGCCCACGCCATTGATGCCACCGCCGATTACGGCAAGGTCATAGCAGTTGGCTGTTGGGGGCTGGGACGAAACTGGCTGGGACACGGG‑CAAGGCCTCCTGAGGCTGTTCACATCGAATGTGAACATTGATGTTCGTTTg > 7:131784/1‑149 (MQ=255) cccACTCCTTTGATGCCACCGCCGATTACGGCAAGGTCATAGCAGTTGGCTGTTGGGGGCTGGGACGAAACTGGCTGGGACACGGG‑CAAGGCCTCCTTAGGCTGTTCACATCTAATGTGAACATTGATGTTCGTTTGCGAAAATATTa < 1:125577/148‑1 (MQ=255) cccACGCCATTGATGCCACCTCCGATTACGGCTAGGTCATAGGAGTTGGCTGTTGGGGGCTGGGACTAAACTGGCTGTGACTCGGG‑CAAGGCCTCCTGAGGCTGTTGAGATCGAATGTGAACATTGATGTTCGTTTGCGAAAATATTa < 5:102020/148‑1 (MQ=255) cccACGCCATTGATGCCACCGCCGATTACGGCAAGGTCATAGCAGTTGGCTGTTGGGGGCTGGGACGAAACTGGCTGGGACACGGG‑CAAGGCCTCCTGAGGCTGTTCACATCGAATGTGAACATTGATGTTCGTTTGCGAAAATATTa < 7:53742/148‑1 (MQ=255) ccACGCCATTGATGCCACCGCCGATTACGGCAAGGTCATAGCAGTTGGCTGTTGGGGGCTGGGACGAAACTGGCTGGGACACGGG‑CAAGGCCTCCTGAGGCTGTTCACATCGAATGTGAACATTGATGTTCGTTTGc < 6:72454/137‑1 (MQ=255) ccACGCCATTGATGCCACCGCCGATTACGGCAAGGTCATAGCAGTTGGCTGTTGGGGGCTGGGACGAAACTGGCTGGGACACGGG‑CAAGGCCTCCTGAGGCTGTTCACATCGAATGTGAACATTGATGTTCGTTTGc > 5:72454/1‑137 (MQ=255) ccACGCCATTGATGCCACCGCCGATTACGGCAAGGTCATAGCAGTTGGCTGTTGGGGGCTGGGACGAAACTGGCTGGGACACGGG‑CAAGGCCTCCTGAGGCTGTTCACATCGAATGTGAACATTGATGTTCGTTTGCGAAAATATTAgc < 2:56241/149‑1 (MQ=255) cACGCCATTGATGCCACCGCCGATTACGGCAAGGTCATAGCAGTTGGCTGTTGGGGGCTGGGACGAAACTGGCTGGGACACGGG‑CAAGGCCTCCTTAGGCTGTTCACATCGAATGTGAACATTGAt < 8:272181/126‑1 (MQ=255) cACGCCATTGATGCCACCGCCGATTACGGCAAGGTCATAGCAGTTGGCTGTTGGGGGCTGGGACGAAACTGGCTGGGACACGGG‑CAAGGCCTCATGAGGCTGTTCACATCGAATGTGAACATTGAt > 7:272181/1‑126 (MQ=255) gCCATTGATGCCACCGCCGATTACGGCAAGGTCATAGCAGTTGGCTGTTGGGGGCTGGGACGAAACTGGCTGGGACACGGG‑CAAGGCCTCCTGAGGCTGTTCACATCGAATGTGAACATTGATGTTCGTTTGCGAAAATATTAGCGCa > 6:116341/1‑148 (MQ=255) aTGCCACCGCCGATTACGGCAAGGTCATAGCAGTTGGCTGTTGGGGGCTGGGACGAAACTGGCTGGGACACGGG‑CAAGGCCTCCTGAGGCTGTTCACATCGAATGTGAACATTGATGTTCGTTTGCGAAAATATTAGCGCAACAGAACg > 3:25523/1‑149 (MQ=255) cACCGCCGATTACGGCAAGGTCATAGCAGTTGGCTGTTGGGGGCTGGGACGAAACTGGCTGGGACACGGG‑CAAGGCCTCCTGAGGCTGTTCACATCGAATGTGAACATTGATGTTCGTTTGCGAAAATATTAGCGCAACAGAACGCCgg > 3:199194/1‑149 (MQ=255) aCCGCCGATTACGGCAAGGTCATAGCAGTTGGCTGTTGGGGGCTGGGACGAAACTGGCTGGGACACGGG‑CAAGGCCTCCTGAGGCTGTTCACATCGAATGTGAACATTGATGTTCGTTTGCGAAAATATTAGCGCAACAGAACGCCGGt < 6:71626/149‑1 (MQ=255) cGGCAAGGTCATAGCAGTTGGCTGTTGGGGGCTGGGACGAAACTGGCTGGGACACGGG‑CAAGGCCTCCTGAGGCTGTTCACATCGAATGTGAACATTGATGTTCGTTTGCGAAAATATTAGCGCAACAGAACGCCGGTCGCcagtcag < 2:47318/148‑1 (MQ=255) ggTCATAGCAGTTGGCTGTTGGGGGCTGGGACGAAACTGGCTGGGACACGGG‑CAAGGCCTCCTGAGGCTGTTCACATCGAATGTGAACATTGATGTTCGTTTGCGAAAATATTAGCGCAACAGAACGCCGGTCGCCAGTCAGTCTCtat < 5:167122/149‑1 (MQ=255) ggTCATAGCAGTTGGCTGTTGGGGGCTGGGACGAAACTGGCTGGGACACGGG‑CAAGGCCTCCTGAGGCTGTTCACATCGAATGTGAACATTGATGTTCGTTTGCGAAAATATTAGCGCAACAGAACGCCGGTCGCCAGTCAGTCTCtat < 4:221107/149‑1 (MQ=255) tCATAGCAGTTGGCTGTTGGGGGCTGGGACGAAACTGGCTGGGACACGGG‑CAAGGCCTCCTGAGGCTGTTCACATCGAATGTGAACATTGATGTTCGTTTGCGAAAATATTAGCGCAACAGAACGCCGGTCg < 4:114466/132‑1 (MQ=255) tCATAGCAGTTGGCTGTTGGGGGCTGGGACGAAACTGGCTGGGACACGGG‑CAAGGCCTCCTGAGGCTGTTCACATCGAATGTGAACATTGATGTTCGTTTGCGAAAATATTAGCGCAACAGAACGCCGGTCg > 3:114466/1‑132 (MQ=255) tGTTGGGGGCTGGGACGAAACTGGCTGGGACACGGG‑CAAGGCCTCCTGAGGCTGTTCACATCGAATGTGAACATTGATGTTCGTTTGCGAAAATATTAGCGCAACAGAACGCCGGTCGCCAGTCAGTCTCTATAGAAAAAACTGATCa > 5:329394/1‑148 (MQ=255) gggggCTGGGACGAAACTGGCTGGGACACGGG‑CAAGGCCTCCTGAGGCTGTTCACATCGAATGTGAACATTGATGTTCGTTTGCGAAAATATTAGCGCAACAGAACGCCGGTCGCCAGTCAGTCTCTATAGAAAAAACTGATCAAAt > 3:161561/1‑147 (MQ=255) gggggCTGGGACGAAACTGGCTGGGACACGGG‑CAAGGCCTCCTGAGGCTGTTCACATCGAATGTGAACATTGATGTTCGTTTGCGAAAATATTAGCGCAACAGAACGCCGGTCGCCAGTCAGTCTCTATAGAAAAAACTGATCAAAt < 4:161561/147‑1 (MQ=255) gCTGGGACGAAACTGGCTGGGACACGGG‑CAAGGCCTCCTGAGGCTGTTCACATCGAATGTGAACATTGATGTTCGTTTGCGAAAATATTAGCGCAACAGAACGCCGGTCGCCAGTCAGTCTCTATAGAAAAAACTGATCAAATGACAAt > 5:291493/1‑149 (MQ=255) gCTGGGACGAAACTGGCTGGGACACGGG‑CAAGGCCTCATGAGGCTGTTCACATCGAATGTGAACATTGATGTTCGTTTGCGAAAATATTAGCGCAACAGAACGCCGGTCGCCAGTCAGTCTCTATAGAAAAAACTGATCAAATGACAAt < 4:199194/149‑1 (MQ=255) tGGGACGAAACTGGCTGGGACACGGG‑CAAGGCCTCCTGAGGCTGTTCACATCGAATGTGAACATTGATGTTCGTTTGCGAAAATATTAGAGCAACAGAACGCCGGTCGCCAGTCAGTCTCTATAGAAAAAACTGATCAAATGACAATg > 4:4191/1‑148 (MQ=255) aCGAAACTGGCTGGGACACGGG‑CAAGGCCTCCTGAGGCTGTTCACATCGAATGTGAACATTGATGTTCGTTTGCGAAAATATTAGCGCAACAGAACGCCGGTCGCAAGTCAGTCTCTATAGAAAAAACTGATCAAATGACAATGAAGt > 7:271583/1‑148 (MQ=255) aaaCTGGCTGGGACACGGG‑CAAGGCCTCCTGAGGCTGTTCACATCGAATGTGAACATTGATGTTCGTTTGCGAAAATATTAGCGCAACAGAACGCCGGTCGCCAGTCAGTCTCTATAGAAAAAACTGATCAAATGACAATGAAGTGaa > 6:263215/1‑148 (MQ=255) tggGACACGGG‑CAAGGCCTCCTGAGGCTGTTCACATCGAATGTGAACATTGATGTTCGTTTGCGAAAATATTAGCGCAACAGAACGc > 8:13021/1‑87 (MQ=255) tggGACACGGG‑CAAGGCCTCCTGAGGCTGTTCACATCGAATGTGAACATTGATGTTCGTTTGCGAAAATATTAGCGCAACAGAACGc < 7:13021/87‑1 (MQ=255) acGGG‑CAAGGCCTCCTGAGGCTGTTCACATCGAATGTGAACATTGATGTTCGTTTGCGAAAATATTAGCGCAACAGAACGCCGGTCGCCAGTCAGTCTCTATAGAAAAAACTGATCaaa > 2:138929/1‑119 (MQ=255) gg‑CAAGGCCTCCTGAGGCTGTTCACATCGAATGTGAACATTGATGTTCGTTTGCGAAAATATTAGCGCAACAGAACGCCGGTCGCCAGTCAGTCTCTATAGAAAAAACTGATCAAATGACAATGAAGTGAACATTTACGAAAATTCAgg < 5:116341/149‑1 (MQ=255) gg‑CAAGGCCTCCTGAGGCTGTTCACATCGAATGTGAACATTGATGTTCGTTTGCGAAAATATTAGCGCAACAGAACGCCGGTCGCCAGTCAGTCTCTATAGAAAAAACTGATCAAATGACAATGAAGTGAACATTTACGAAAATTCAgg < 6:329394/149‑1 (MQ=255) ggCCTCCTGAGGCTGTTCACATCGAATGTGAACATTGATGTTCGTTTGCGAAAATATTAGCGCAACAGAACGCCGGTCGCCAGTCAGTCTCTATAGAAAAAACTGATCAAATGACAATGAAGTGAACATTTACg > 3:207769/1‑134 (MQ=255) ggCCTCCTGAGGCTGTTCACATCGAATGTGAACATTGATGTTCGTTTGCGAAAATATTAGCGCAACAGAACGCCGGTCGCCAGTCAGTCTCTATAGAAAAAACTGATCAAATGACAATGAAGTGAACATTTACg < 4:207769/134‑1 (MQ=255) ctcctGAGGCTGTTCACATCGAATGTGAACATTGATGTTCGTTTGCGAAAATATTAGCGCAACAGAACGCCGGTCGCCAGTCAGTCTCTATAGAAAAAACTGATCAAATGACAATGAAGTGAACATTTACGAAAATTCAGGGGGTACgg > 8:242247/1‑149 (MQ=255) ctGAGGCTGTTCACATCGAATGTGAACATTGATGTTCGTTTGCGAAAATATTAGCGCAACAGAACGCCGGTCGCCAGTCAGTCTCTATAGAAAAAACTGATCAAATGACAATGAAGTGAACATTTACGAAAATTCAGGGGGTACGGCtt < 5:263215/149‑1 (MQ=255) atcaatGTTCACATTCGATGTGAACATTGATGTTCGTTTGCGAAAATATTAGCGCAACAGAACGCCGGTCGCCAGTCAGTCTCTATAGAAAAAACTGATCAAATGACAATGAAGTGAACATTTACGaaa < 2:320453/124‑1 (MQ=255) atcaatGTTCACATTCGATGTGAACATTGATGTTCGTTTGCGAAAATATTAGCGCAACAGAACGCCGGTCGCCAGTCAGTCTCTATAGAAAAAACTGATCAAATGACAATGAAGTGAACATTTACGaaa > 1:320453/6‑129 (MQ=255) aGGCTGTTCACATCGAATGTGAACATTGATGTTCGTTTGCGAAAATATTAGCGCAACAGAACGCCGGTCGCCAGTCAGTCTCTATAGAAAAAACTGATCAAATGACAATGAAGTGAACATTTACGAAAATTCAGGGGGTACGGCTTgg < 7:180914/148‑1 (MQ=255) aGGCTGTTCACATCGAATGTGAACATTGATGTTCGTTTGCGAAAATATTAGCGCAACAGAACGCCGGTCGCCAGTCAGTCTCTATAGAAAAAACTGATCAAATGACAATGAAGTGAACATTTACGAAAATTCAGGGGGTACGGCTTgg > 8:180914/1‑148 (MQ=255) atGTTCACATTCGATGTGAACATTGATGTTCGTTTGCGAAAATATTAGCGCAACAGAACGCCGGTCGCCAGTCAGTCTCTATAGAAAAAACTGATCAAATGACAATGAAGTGAACATTTACGAAAATTCAGGGGGTACGGCTTGGGt > 5:280554/2‑147 (MQ=255) tGTTCACATTCGATGTGAACATTGATGTTCGTTTGCGAAAATATTAGCGCAACAGAACGCCGGTCGCCAGTCAGTCTCTATAGAAAAAACTGATCAAATGACAATGAAGTGAACATTTACGAAAATTCAGGGGGTACGGCTTGGGTGAg > 3:147462/1‑149 (MQ=255) gTTCACATCGAATGTGAACATTGATGTTCGTTTGCGAAAATATTAGCGCAACAGAACGCCGGTCGCCAGTCAGTCTCTATAGAAAAAACTGATCAAATGACAATGAAGTGAACATTTACGAAAATTCAGGGGGTACGGCTTGGGTGAgg > 5:118651/1‑149 (MQ=255) gTTCACATCGAATGTGAACATTGATGTTCGTTTGCGAAAATATTAGCGCAACAGAACGCCGGTCGCCAGTCAGTCTCTATAGAAAAAACTGATCAAATGACAATGAAGTGAACATTTACGAAAATTCAGGGGGTACGGCTTGGGTGAgg > 2:126131/1‑149 (MQ=255) ttCACATCGAATGTGAACATTGATGTTCGTTTGCGAAAATATTAGCGCAACAGAACGCCGGTCGCCAGTCAGTCTCTATAGAAAAAACTGATCAAATGACAATGAAGTGAACATTTACGAAAATTCAGGGGGTACGGCTTGGGTGAggg < 8:131784/149‑1 (MQ=255) acaTCGAATGTGAACATTGATGTTCGTTTGCGAAAATATTAGCGCAACAGAACGCCGGTCGCCAGTCAGTCTCTATAGAAAAAACTGATCAAATGACAATGAAGTGAACATTTACGAAAATTCAGGGGGTACGGCTTGGGTGAGGGGgc > 6:222632/1‑149 (MQ=255) | CTTCAAGCCGCGACCAGCGGCGTCGGCAGCGATGCCCACGCCATTGATGCCACCGCCGATTACGGCAAGGTCATAGCAGTTGGCTGTTGGGGGCTGGGACGAAACTGGCTGGGACACGGG‑CAAGGCCTCCTGAGGCTGTTCACATCGAATGTGAACATTGATGTTCGTTTGCGAAAATATTAGCGCAACAGAACGCCGGTCGCCAGTCAGTCTCTATAGAAAAAACTGATCAAATGACAATGAAGTGAACATTTACGAAAATTCAGGGGGTACGGCTTGGGTGAGGGGGC > NC_002947/1232590‑1232879 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |