| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 1,296,282 | G→C | 6.2% | intergenic (‑35/‑531) | nhaA‑I ← / → PP_1133 | Na(+)/H(+) antiporter NhaA/transposase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 1,296,282 | 0 | G | C | 6.2% | 249.0 / 5.6 | 81 | intergenic (‑35/‑531) | nhaA‑I/PP_1133 | Na(+)/H(+) antiporter NhaA/transposase |
| Reads supporting (aligned to +/- strand): ref base G (36/40); new base C (3/2); total (39/42) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.68e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.67e-01 | |||||||||||
GTTGATGATCAGGGCCAGAACGGCGGCGGCGATCAACAGCAGGCCACTGGCGGCTTCGAGCTGGAAGAAACGGGTAAACAGGCTACGCACGGGCTGTAGGCCCTCCATGAGCAGTTTACGCAGGGTACGGGCGTACACCC‑TAGCCTGCAGAGATATGCTTTCAAACAAAAGACATATTCGTTTTTGTTATATGTTGTTGCTGACAGGCCTGGGGCAAGCCTAGATGGATTTGGGGAAGGATGGGGGAGGGGAAGTCTGGAGTAGGTGCTGGAATAGTCTGATGCCG > NC_002947/1296140‑1296425 | gttgATGATCAGGGCCAGAACGGCGGCGGCGATCAACAGCAGGCCACTGGCGGCTTCGAGCTGGAAGAAACGGGTAAACAGGCTACGCACGGGCTGTAGGCCCTCCATGAGCAGTTTACGCAGGGTACGGGCGTACACCC‑TAGCCTg > 3:321015/1‑147 (MQ=255) tgatgaTCAGGGCCAGAACGGCGGCGGCGATCAACAGCAGGCCACTGGCGGCTTCGAGCTGGAAGAAACGGGTAAACAGGCTACGCACGGGCTGTAGGCCCTCCATGAGCAGTTTACGCAGGCTA‑GGGTGTACGCCCGTACCCTGcg > 4:94257/1‑146 (MQ=255) tgatgaTCAGGGCCAGAACGGCGGCGGCGATCAACAGCAGGCCACTGGCGGCTTCGAGCTGGAAGAAACGGGTAAACAGGCTACGCACGGGCTGTAGGCCCTCCATGAGCAGTTTACGCAGGCTA‑GGGTGTACGCCCGTACCCTGcg < 3:94257/147‑2 (MQ=255) gatgatCAGGGCCAGAACGGCGGCGGCGATCAACAGCAGGCCACTGGCGGCTTCGAGCTGGAAGAAACGGGTAAACAGGCTCCGCACGGGCTGTAGGCCCTCCATGAGCAGTTTACGCAGGGTACGGGCGTACACCC‑TAGCCTGCa > 6:103550/1‑146 (MQ=255) gatgatCAGGGCCAGAACGGCGGCGGCGATCAACAGCAGGCCACTGGCGGCTTCGAGCTGGAAGAAACGGGTAAACAGGCTACGCACGGGCTGTAGGCCCTCCATGAGCAGTTTACGCAGGGTACGGGCGTACACCC‑TAGCCTGCa > 4:147892/1‑146 (MQ=255) atgatCAGGGCCAGAACGGCGGCGGCGATCAACAGCAGGCCACTGGCGGCTTCGAGCTGGAAGAAACGGGTAAACAGGCTACGCACGGGCTGTAGGCCCTCCATGAGCAGTTTACGCAGGGTACGGGCGTACACCC‑TAGCCTGCa > 7:266824/1‑145 (MQ=255) atgatCAGGGCCAGAACGGCGGCGGCGATCAACAGCAGGCCACTGGCGGCTTCGAGCTGGAAGAAACGGGTAAACAGGCTACGCACGGGCTGTAGGCCCTCCATGAGCAGTTTACGCAGGGTACGGGCGTACACCC‑TAGCCTGCa > 8:111690/1‑145 (MQ=255) tgatCAGGGCCAGAACGGCGGCGGCGATCAACAGCAGGCCACTGGCGGCTTCGAGCTGGAAGAAACGGGTAAACAGGCTACGCACGGGCTGTAGGCCCTCCATGAGCAGTTTACGCAGGGTACGGGCGTACACCC‑TAGCCTGCAGAGat < 6:200581/149‑1 (MQ=255) atCAGGGCCAGAACGGCGGCGGCGATCAACAGCAGGCCACTGGCGGCTTCGAGCTGGAAGAAACGGGTAAACAGGCTACGCACGGGCTGTAGGCCCTCCATGAGCAGTTTACGCAGGGTACGGGCGTACACCC‑TAGCCTGCAGAGatat < 4:321015/149‑1 (MQ=255) tCAGGGCCAGAACGGCGGCGGCGATCAACAGCAGGCCACTGGCGGCTTCGAGCTGGAAGAAACGGGTAAACAGGCTACGCACGGGCTGTAGGCCCTCCATGAGCAGTTTACGCAGGGTACGGGCGTACACCC‑TAGCCTGCAGAGATATg > 6:234295/1‑149 (MQ=255) ggcggcggcGATCAACAGCAGGCCACTGGCGGCTTCGAGCTGGAAGAAACGGGTAAACAGGCTACGCACGGGCTGTAGGCCCTCCATGAGCAGTTTACGCAGGGTACGGGCGTACACCC‑TAGCCTGCAGAGATATGCTTTCAAACaaaa < 2:313952/149‑1 (MQ=255) cggcggcgATCAACAGCAGGGCACTGGCGGCTGCGAGGTGGAAGAAACGGGTAAACAGGCTACGCACGGGCTGTAGGCCCTCCATGAGCAGTTTACGCAGGGTACGGGCGTACACCC‑TAGCCTGCAGAGATATGCTTTCAAACAAAAGa < 4:178281/149‑1 (MQ=255) gATCAACAGCAGGCCACTGGCGGCTTCGAGCTGGAAGAAACGGGTAAACAGGCTACGCACGGGCTGTAGGCCCTCCATGAGCAGTTTACGCAGGGTACGGGCGTACACCC‑TAGCCTGCAGAGATATGCTTTCAAACAAAAGACATATTc > 4:265870/1‑149 (MQ=255) aaCAGCAGGCCACTGGCGGCTTCGAGCTGGAAGAAACGGGTAAACAGGCTACGCACGGGCTGTAGGCCCTCCATGAGCAGTTTACGCAGGGTACGGGCGTACACCC‑TAGCCTGCAGAGATATGCTTTCAAACAAAAg > 8:47603/1‑137 (MQ=255) aaCAGCAGGCCACTGGCGGCTTCGAGCTGGAAGAAACGGGTAAACAGGCTACGCACGGGCTGTAGGCCCTCCATGAGCAGTTTACGCAGGGTACGGGCGTACACCC‑TAGCCTGCAGAGATATGCTTTCAAACAAAAg < 7:47603/137‑1 (MQ=255) aaCAGCAGGCCACTGGCGGCTTCGAGCTGGAAGAAACGGGTAAACAGGCTACGCACGGGCTGTAGGCCCTCCATGAGCAGTTTACGCAGGCTA‑GGGTGTACGCCCGTACCCTGc > 4:280602/1‑114 (MQ=38) aaCAGCAGGCCACTGGCGGCTTCGAGCTGGAAGAAACGGGTAAACAGGCTACGCACGGGCTGTAGGCCCTCCATGAGCAGTTTACGCAGGCTA‑GGGTGTACGCCCGTACCCTGc < 3:280602/114‑1 (MQ=38) agcagGCCACTGGCGGCTTCGAGCTGGAAGAAACGGGTAAACAGGCTACGCACGGGCTGTAGGCCCTCCATGAGCAGTTTACGCAGGGTACGGGCGTACACCC‑TAGCCTGCAGAGATATGCTTTCAAACAAAAGACATATTCGTTTTTg < 3:83859/149‑1 (MQ=255) ccACTGGCGGCTTCGAGCTGGAAGAAACGGGTAAACAGGCTACGCACGGGCTGTAGGCCCTCCATGAGCAGTTTACGCAGGGTACGGGCGTACACCC‑TAGCCTGCAGAGATATGCTTTCAAACAAAAGACATATTCGTTTTTGTTatat > 5:334585/1‑149 (MQ=255) ggcTTCGAGCTGGAAGAAACGGGTAAACAGGCTACGCACGTGCTGTAGGCCCTCCATGAGCAGTTTACGCAGGGTACGGGCGTACACCC‑TAGCCTGCAGAGATATGCTTTCAAACAAAAGACATATTCGTTTTTGTTATATGTTGTTGc < 3:200172/149‑1 (MQ=255) ttCGAGCTGGAAGAAACGGGTAAACAGGCTACGCACGGGCTGTAGGCCCTCCATGAGCAGTTTACGCAGGGTACGGGCGTACACCC‑TAGCCTGCAGAGATATGCTTTCAAACAAAAGACATATTCGTTTTTGTTATATGTTGTTGCTGa > 7:314682/1‑149 (MQ=255) tCGAGCTGGAAGAAACGGGTAAACAGGCTACGCACGGGCTGTAGGCCCTCCATGAGCAGTTTACGCAGGGTACGGGCGTACACCC‑TAGCCTGCAGAGATATGCTTTCAAACAAAAGACATATTCGTTTTTGTTATATGTTGTTGCTGa > 3:41232/1‑148 (MQ=255) cGAGCTGGAAGAAACGGGTAAACAGGCTACGCACGGGCTGTAGGCCCTCCATGAGCAGTTTACGCAGGGTACGGGCGTACACCC‑TAGCCTGCAGAGATATGCTTTCAAACAAAAGACATATTCGTTTTTGTTATATGTTGTTGCTGa < 5:78548/147‑1 (MQ=255) gAGCTGGAAGAAACGGGAAAACAGGCTACGCACGGGCTGTAGGCCCTCCATGATAAGTTTACGCAGGGAACGGCCGTACACCC‑TAGCCTGCAGAGATATGCTTTAACACAAAATACATATTCGTTTTTGTTATATGTTGTTGCTGAAAg > 5:170942/1‑149 (MQ=255) taagaaACGGGTAAACAGGCTACGGACGGGCTGTAGGCCCTCCTTGAGGTGTTTACGCAGGGTACGGGCGTACACCC‑TAGCCTGCAGTGATATTCTTTCAAAGAAAAGACATATTCGTTTTTGTTATATGTTGTTGCTTACAGGCCTgg < 4:146405/148‑1 (MQ=255) gaagaaACGGGTAAACAGGCTACGCACGGGCTGTAGGCCCTCCATGAGCAGTTTACGCAGGGTACGGGCGTACACCC‑TAGCCTGCAGAGATATGCTTTCAAACAAAAGACATATTCGTTTTTGTTATATGTTGTTGCTGACAGGCCTgg < 3:147892/149‑1 (MQ=255) gaagaaACGGGTAAACAGGCTACGCACGGGCTGTAGGCCCTCCATGAGCAGTTTACGCAGGGTACGGGCGTACACCC‑TAGCCTGCAGAGATATGCTTTCAAACAAAAGACATATTCGTTTTTGTTATATGTTGTTGCTGACAGGCCTgg > 3:146405/1‑149 (MQ=255) aagaaACGGGTAAACAGGCTACGCACGGGCTGTAGGCCCTCCATGAGCAGTTTACGCAGGGTACGGGCGTACACCC‑TAGCCTGCAGAGATATGCTTTCAAACAAAAGACATATTCGTTTTTGTTATATGTTGTTGCTGACAGGCCTggg < 7:111690/149‑1 (MQ=255) aagaaACGGGTAAACAGGCTACGCACGGGCTGTAGGCCCTCCATGAGCAGTTTACGCAGGGTACGGGCGTACACCC‑TAGCCTGCAGAGATATGCTTTCAAACAAAAGACATATTCGTTTTTGTTATATGTTGTTGCTGACAGGCCTggg < 8:271235/149‑1 (MQ=255) aaaCGGGTAAACAGGCTACGCACGGGCTGTAGGCCCTCCATGAGCAGTTTACGCAGGGTACGGGCGTACACCC‑TAGCCTGCAGAGATATGCTTTCAAACAAAAGACATATTCGTTTTTGTTATATGATGTTGCTGACAGGCCTGGGGc > 5:258337/1‑148 (MQ=255) gggTAAACAGGCTACGCACGGGCTGTAGGCCCTCCATGAGCAGTTTACGCAGGGTACGGGCGTACACCC‑TAGCCTGCAGAGATATGCTTTCAAACAAAAGACATATTCGTTTTTGTTATATGTTGTTGCTGACAGGCCTGGGGCAAGcc > 1:171643/1‑149 (MQ=255) gggTAAACAGGCTACGCACGGGCTGTAGGCCCTCCATGAGCAGTTTACGCAGGGTACGGGCGTACACCC‑TAGCCTGCAGAGATATGCTTTCAAACAAAAGACATATTCGTTTTTGTTATATGTTGTTGCTGACAGGCCTGGGGCAAGcc > 1:23474/1‑149 (MQ=255) ggTAAACAGGCTACGCACGGGCTGTAGGCCCTCCATGAGCAGTTTACGCAGGGTACGGGCGTACACCC‑TAGCCTGCAGAGATATGCTTTCAAACAAAAGACATATTCGTTTTTGTTATATGTTGTTGCTGACAGGCCTgggg > 1:154883/1‑142 (MQ=255) ggTAAACAGGCTACGCACGGGCTGTAGGCCCTCCATGAGCAGTTTACGCAGGGTACGGGCGTACACCC‑TAGCCTGCAGAGATATGCTTTCAAACAAAAGACATATTCGTTTTTGTTATATGTTGTTGCTGACAGGCCTgggg < 2:154883/142‑1 (MQ=255) ggTAAACAGGCTACGCACGGGCTGTAGGCCCTCCATGAGCAGTTTACGCAGGGTACGGGCGTACACCC‑TAGCCTGCAGAGATATGCTTTCAAACAAAAGACATATTCGTTTTTGTTATATGATGTTGCTGACAGGCCTGGGGCAAGCCt < 6:258337/149‑1 (MQ=255) aCAGGCTACGCACGGGCTGTAGGCCCTCCATGAGCAGTTTACGCAGGGTACGGGCGTACACCC‑TAGCCTGCAGAGATATGCTTTCAAACAAAAGACACATTCGTTTTTGTTATATGTTGTTGCTGACAGGCCTGGGGCAAGCCTAGATg > 8:323874/1‑149 (MQ=255) aGGCTACGCACGGGCTGTAGGCCCTCCATGAGCAGTTTACGCAGGGTACGGGCGTACACCC‑TAGCCTGCAGAGCTATGCTTTCAAACAAAAGACAGATTCGTTTTTGTTATATGTTGTTGCTGACAGGCCTGGGGCAAGCCTAGATGGa > 7:123787/1‑149 (MQ=255) aGGCTACGCACGGGCTGTAGGCCCTCCATGAGCAGTTTACGCAGGGTACGGGCGTACACCC‑TAGCCTGCAGAGATATGCTTTCAAACAAAAGACATATTCGTTTTTGTTATATGTTGTTGCTGACAGGCCTGGGGCAAGCCTAGATGGa > 7:60385/1‑149 (MQ=255) gCTACGCACGGGCTGTAGGCCCTCCATGAGCAGTTTACGCAGGGTACGGGCGTACACCC‑TAGCCTGCAGAGATATGCTTTcaaaca < 4:260230/86‑1 (MQ=255) gCTACGCACGGGCTGTAGGCCCTCCATGAGCAGTTTACGCAGGGTACGGGCGTACACCC‑TAGCCTGCAGAGATATGCTTTcaaaca > 3:260230/1‑86 (MQ=255) cGCACGGGCTGTAGGCCCTCCATGAGCAGTTTACGCAGGGTACGGGCGTACACCC‑TAGCCTGCAGAGATATGCTTTCAAACAAAAGACATATTCGTTTTTGTTATATGTTGTTGCTGACAGGCCTGGGGCAAGCCTAGATGGATTTgg < 2:171643/148‑1 (MQ=255) cGCACGGGCTGTAGGCCCTCCATGAGCAGTTTACGCAGGGTACGGGCGTACACCC‑TAGCCTGCAGAGATATGCTTTCAAACAAAAGACATATTCGTTTTTGTTATATGTTGTTGCTGACAGGCCTGGGGCAAGCCTAGATGGATTTg < 8:60385/147‑1 (MQ=255) cGCACGGGCTGTAGGCCCTCCATGAGCAGTTTACGCAGGGTACGGGCGTACACCC‑TAGCCTGCAGAGATATGCTTTCAAACAAAAGACATATTCGTTTTTGTTATATGTTGTTGCTGACAGGCCTGGGGCAAGCCTAGATGGATTTg < 5:234295/147‑1 (MQ=255) gCACGGGCTGTAGGCCCTCCATGAGCAGTTTACGCAGGGTACGGGCGTACACCC‑TAGCCTGCAGAGATATGCTTTCAAACAAAAGACATATTCGTTTTTGTTATATGTTGTTGCTGACAGGCCTGGGGCAAGCCTAGATGGATTTggg > 6:175713/1‑148 (MQ=255) actggCTGTAGTCCCTCCATGAGCAGTTTACGCAGGGTACGTGCTTACACCC‑TAGCCTGCAGATATATGCTTTCAAACAAATGACATATTCGTTTTTGTTATATGTTGTTTCTGACAGGCCTTGGGCAAGCCTAGATGTATATGGGGaa < 2:256046/146‑1 (MQ=255) aCGGGCTGTAGGCCCTCCATGAGCAGTTTACGCAGGGTACGGGCGTACACCC‑TAGCCTGCAGAGATATGCTTTCAAACAAAAGACATATTCGTTTTTGTTATATGTTGTTGCTGACAGGCCTGGGGCAAGCCTAGATGGATTTGGGGaa < 8:60721/149‑1 (MQ=255) aCGGGCTGTAGGCCCTCCATGAGCAGTTTACGCAGGGTACGGGCGTACACCC‑TAGCCTGCAGAGATATGCTTTCAAACAAAAGACATATTCGTTTTTGTTATATGTTGTTGCTGACAGGCCTGGGGCAAGCCTAGATGGATTTGGGGaa < 3:265870/149‑1 (MQ=255) gggCTGTAGGCCCTCCATGAGCAGTTTACGCAGGGTACGGGCGTACACCC‑TAGCCTGCAGAGATATGCTTTCAAACAAAAGACATATTCGTTTTTGTTATATGTTGTTGCTGACAGGCCTGGGGCAAGCCTAGATGGATTTGGGGAAg > 3:70729/1‑148 (MQ=255) gCTGTAGGCCCTCCATGAGCAGTTTACGCAGGGTACGGGCGTACACCC‑TAGCCTGCAGAGATATGCTTTCAAACAAAAGACATATTCGTTTTTGTTATATGTTGTTGCTGACAGGCCTGGGGCAAGCCTAGATGGATTTGGGGAAGGAt > 4:48578/1‑149 (MQ=255) tAGGCCCTCCATGAGCAGTTTACGCAGGGTACGGGCGTACACCC‑TAGCCTGCATAGATATGCTTTCAAACAAAAGACATATTCGTTTTTGTTATATGTTGTTGCTGACAGGCCTGGGGCAAGCCTAGATGGATTTGGGGAAGGATggg < 5:103550/148‑1 (MQ=255) tAGGCCCTCCATGAGCAGTTTACGCAGGGTACGGGCGTACACCC‑TAGCCTGCAGAGATATGCTTTCAAACAAAAGACATATTCGTTTTTGTTATATGTTGTTGCTGACAGGCCTGGGGCAAGCCTAGATGGATTTGGGGAAGGATggg < 8:266824/148‑1 (MQ=255) ggCCCTCCATGAGCAGTTTACGCAGGGTACGGGCGTACACCC‑TAGCCTGCAGAGATATGCTTTCAAACAAAAGACATATTCGTTTTTGTTATATGTTGTTGCTGACAGGCCTGGGGCAAGCCTAGATGGATTTGGGGAAGGATggggg < 4:41232/148‑1 (MQ=255) gCCCTCCATGAGCAGTTTACGCAGGGTACGGGCGTACACCC‑TAGCCTGCAGAGATATGCTTTCAAACAAAAGACATATTCGTTTTTGTTATATGTTGTTGCTGACAGGCCTGGGGCAAGCCTAGATGGATTTGGGGAAGGATGggggag > 1:117530/1‑149 (MQ=255) gCCCTCCATGAGCAGTTTACGCAGGGTACGGGCGTACACCC‑TAGCCTGCAGAGATATGCTTTCAAACAAAAGACATATTCGTTTTTGTTATATGTTGTTGCTGACAGGCCTGGGGCAAGCCTAGATGGATTTGGGGAAGGATGggggag < 2:117530/149‑1 (MQ=255) cccTCCATGAGCAGTTTACGCAGGTTACGGGCTTACACCC‑AAGCCTGCAGAGATATGCTTTCAAACAAAAGACATATTCGTTTTTGTTATATGTTGTTGCTCACAGGCCTGGGGCAAGCCTACATGGATTTGGGGAAGGATGggggagg < 2:23474/149‑1 (MQ=255) ccTCCATGAGCAGTTTACGCAGGGTACGGGCGTACACCC‑TAGCCTGCAGAGATATGCTTTCAAACAAAAGACATATTCGTTTTTGTTATATGTTGTTGCTGACAGGCCTGGGGCAAGCCTAGATGGATTTGGGGAAGGATGggggaggg < 8:314682/149‑1 (MQ=255) attaGCATTTTACGCAGGGTACGGGCTTACACCC‑TAGCCTGAAGATATATGCTTTCAAACAAAAGACATATTCGTTTTTGTTATATGTTGTTGCTGACAGGCCTGGGGCAAGCCTATATGGATTTGGGGAAGGATGGGGGAGGGGAAGt < 3:99880/146‑1 (MQ=255) tGAGCAGTTTACGCAGGGTACGGGCGTACACCC‑TAGCCTGCAGAGATATGCTTTCAAACAAAAGACATATTCGTTTTTGTTATATGTTGTTGCTGACAGGCCTGGGGCAAGCCTAGATGGATTTGGGGAAGGATGGGGGAGGGGAAGTc > 2:60627/1‑149 (MQ=255) aGCAGTTTACGCAGGGTACGGGCGTACACCC‑TAGCCTGCAGAGATATGCTTTCAAACAAAAGACATATTCGTTTTTGTTATATGTTGTTGCTGACAGGCCTGGGGCAAGCCTAGATGGATTTGGGGAAGGATGGGGGAGGGGAAGTCTg < 4:70729/149‑1 (MQ=255) ctgTTTACGCAGGGTACGGGCGTACACCC‑TAGCCTGAAGAGATATGCTTTCAAACAAAAGACAAATTCGTTTTTTTTTTATGTTGTTGCTGACAGGCCTGGGGAAAGCCTAGATTGATTTGGGGAAGGATGGGGGAGGGGAAGTCTGGa < 5:177907/147‑1 (MQ=255) cAGTTTACGCAGGGTACGGGCGTACACCC‑TAGCCTGCAGAGATATGCTTTCAAACAAAAGACACATTCGTTTTTGTTATATGTTGTTGCTGACAGGCCTGGGGCAAGCCTAGATGGATTTGGGGAAGGATGGGGGAGGGGAAGTCTGGa < 7:323874/149‑1 (MQ=255) aGTTTACGCAGGGTACGGGCTTACACCG‑TAGCCTTCAGATATATGATTTAAAAAAAATGACATATTCTTTTTTGTTATATGTTGTTGCTGACAGGCCTGGGCCAAGCCTATATGGATTTGGGGATGTATGGGGGAGGGGAAGTCTGGAg < 6:170942/149‑1 (MQ=255) aGTTTACGCAGGGTACGGGCGTACACCC‑TAGCCTGCAGAGATATGCTTTCAAACAAAAGACATATTCGTTTTTGTTATATGTTGTTGCTGACAGGCCTGGGGCAAGCCTAGATGGATTTGGGGAAGGATGGGGGAGGGGAAGTCTGGAg > 7:226317/1‑149 (MQ=255) gTTTACGCAGGGTACGGGCGTACACCC‑TTGCCTGCAGATATATGCTTTAAAACAAAAGACATATTCGTTTTTGTTATATGTTGTTGCTGACAGGCCTGGGGCAAGCCTAGATGGATTTGGGGAAGGATGGGGGAGGGTAAGTCTGGAGt < 5:159505/149‑1 (MQ=255) gTTTACGCAGGGTACGGGCGTACACCC‑TAGCCTGCAGAGATATGCTTTCAAACAAAAGACATATTCGTTTTTGTTATATGTTGTTGCTGACAGGCCTGGGGCAAGCCTAGATGGATTTGGGGAAGGATGGGGGAGGGGAAGTCTGGAg > 4:298409/1‑148 (MQ=255) tttACGCAGGGTACGGGCGTACACCC‑TAGCCTGCAGAGATATGCTTTCAAACAAAAGACATATTCGTTTTTGTTATATGTTGTTGCTGACAGGCCTGGGGCAAGc < 3:6950/105‑1 (MQ=255) tttACGCAGGGTACGGGCGTACACCC‑TAGCCTGCAGAGATATGCTTTCAAACAAAAGACATATTCGTTTTTGTTATATGTTGTTGCTGACAGGCCTGGGGCAAGc > 4:6950/1‑105 (MQ=255) tttACGCAGGGTACGGGCGTACACCC‑TAGCCTGCAGAGATATGCTTTCAAACAAAAGACATATTCGTTTTTGTTATATGTTGTTGCTGACAGGCCTGGGGCAAGCCTAGATGGATTTGGGGAAGGATGGGGGAGGGGAAGTCTGGAg > 1:184800/1‑147 (MQ=255) tttACGCAGGGTACGGGCGTACACCC‑TAGCCTGCAGAGATATGCTTTCAAACAAAAGACATATTCGTTTTTGTTATATGTTGTTGCTGACAGGCCTGGGGCAAGCCTAGATGGATTTGGGGAAGGATGGGGGAGGGGAAGTCTGGAGTa < 8:226317/149‑1 (MQ=255) gCAGGGTACGGGCGTACACCC‑TAGCCTGCAGAGATATGCTTTCAAACAAAAGACATATTCGTTTTTGTTATATGTTGTTGCTGACAGGCCTGGGGCAAGCCTAGATGGATTTGGGGAAGGATGGGGGAGGGGAAGTCTGGAGTAGGTGc > 4:168612/1‑149 (MQ=255) gCAGGGTACGGGCGTACACCC‑TAGCCTGCAGAGATATGCTTTCAAACAAAAGACATATTCGTTTTTGTTATATGTTGTTGCTGACAGGC‑‑GGGGCAAGCCTAGATGGATTTGGGGAAGGATGGGGGAGGGGAAGTCTGGAGTAGGTGCTg > 1:189434/1‑149 (MQ=255) aGGGTACGGGCGTACACCC‑TAGCCTGCAGAGATATGCTTTCAAACAAAAGACATATTCGTTTTTGTTATATGTTGTTGCTGACAGGCCTGGGGCAAGCCTAGATGGATTTGGGGAAGGATGGCGGAGGGGAAGTCTGGAGTAGGTGCTg > 2:6769/1‑149 (MQ=255) ggctagggTGTACGCCCGTACCCTGCAGAGATATGCTTTCAAACAAAAGACATATTCGTTTTTGTTATATGTTGTTGCTGACAGGCCTGGGGCAAGCCTAGATGGATTTGGGGAAGGATGGGGGAGGGGAAGTCTGGAGTAGGTGCTg > 4:250646/6‑148 (MQ=255) gTACGGGCGTACACCC‑TAGCCTGCAGAGATATGCTTTCAAACAAAAGACATATTCGTTTTTGTTATATGTTGTTGCTGACAGGCCTGGGGCAAGCCTAGATGGATTTGGGGAAGGATGGGGGAGGGGAAGTCTGGAGTAGGTGCTGGaa > 5:120427/1‑149 (MQ=255) gggCGTACACCC‑TAGCCTGCAGAGATATGCTTTCAAACAAAAGACATATTCGTTTTTGTTATATGTTGTTGCTGACAGGCCTGGGGCAAGCCTAGATGTATTTGGGGAAGGATGGGGGAGGGGAAGTCTGGAGTAGGTGCTGGAATAGt < 5:175713/149‑1 (MQ=255) gggCGTACACCC‑TAGCCTGCAGAGATATGCTTTCAAACAAAAGACATATTCGTTTTTGTTATATGTTGTTGCTGACAGGCCTGGGGCAAGCCTAGATGGATTTGGGGAAGGATGGGGGAGGGGAAGTCTGGAGTAGGTGCTGGAATAGt < 3:48578/149‑1 (MQ=255) ggCGTACACCC‑TAGCCTGCAGAGATATGCTTTCAAACAAAAGACATATTCGTTTTTGTTATATGTTGTTGCGGACAGGCCTGGGGCAAGCCTAGATGGATTTGGGGAAGGATGGGGGAGGGGAAGTCTGGAGTAGGTGCTGGAATAGTc < 6:334585/149‑1 (MQ=255) cacCC‑TAGCCTGCAGAGATATGCTTTCAAACAAAAGACATATTCGTTTTTGTTATATGTTGTTGCTGACAGGCCTGGGGCAAGCCTAGATGGATTTGGGGAAGGATGGGGGAGGGGAAGTCTGGAGTAGGTGCTGGAATAGTCTGATGc < 6:120427/149‑1 (MQ=255) acCC‑TAGCCTGAAGAGATATGCTTTCAAACAAAAGACATATTCG‑TTTTGTTATATGTTGTTGCTGACAGGCCTGGGGCAAGCCTAGATGGATATGGGGAAGGATGGGGTAGGGGAAGTCTGGAGTATGTGCTGGAATAGTCTGATGCCg > 4:45498/1‑149 (MQ=255) cc‑TAGCCTGCAGAGATATGCTTTCAAACAAAAGACATATTCGTTTTTGTTATATGTTGTTGCTGACAGGCCTggg < 7:59853/75‑1 (MQ=255) cc‑TAGCCTGCAGAGATATGCTTTCAAACAAAAGACATATTCGTTTTTGTTATATGTTGTTGCTGACAGGCCTggg > 8:59853/1‑75 (MQ=255) | GTTGATGATCAGGGCCAGAACGGCGGCGGCGATCAACAGCAGGCCACTGGCGGCTTCGAGCTGGAAGAAACGGGTAAACAGGCTACGCACGGGCTGTAGGCCCTCCATGAGCAGTTTACGCAGGGTACGGGCGTACACCC‑TAGCCTGCAGAGATATGCTTTCAAACAAAAGACATATTCGTTTTTGTTATATGTTGTTGCTGACAGGCCTGGGGCAAGCCTAGATGGATTTGGGGAAGGATGGGGGAGGGGAAGTCTGGAGTAGGTGCTGGAATAGTCTGATGCCG > NC_002947/1296140‑1296425 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |