Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 1,306,917 | C→G | 7.5% | R234P (CGC→CCC) ‡ | livK ← | branched‑chain amino acids ABC transporter substrate‑binding protein |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 1,306,917 | 0 | C | G | 7.5% | 168.8 / 4.0 | 53 | R234P (CGC→CCC) ‡ | livK | branched‑chain amino acids ABC transporter substrate‑binding protein |
Reads supporting (aligned to +/- strand): ref base C (27/22); new base G (2/2); total (29/24) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 2.92e-01 |
CTTGTTCGCCGGGTCCGCGTCGAACGACTTCGGCAGGGTGACCAGCAGGCCTTCGGAGGCGTTCTGGGCGATCTGCGAAATGGAGTCGTTACCCACGCCTTCCGGACCCATGAACTTGGCTTTCA‑GGCCTTTTTCCTGAGCCTGGCGCAGGATCAGGCCCAGCTCTGGGTGGTAGCCGCCGTAGTAGACGAAGTCGACGTTGTTCTGCTTGAGCTTCTGGATGATCGAGGAGAAGTCCTTGTCACCCGCGTTCAGGCCTTCGAACACGGCAACCTTGGTGCCTTTGCTT > NC_002947/1306772‑1307060 | cttGTTCGCCGGGTCCGCGTCGAACGACTTCGGCAGGGTGACCAGCAGGCCTTCGGAGGCGTTCTGGGCGATCTGCGAAATGGAGTCGTTACCCACGCCTTCCGGACCCATGAACTTGGCTTTCA‑GGCCTTTTTCCTGAGCCTGgcgc < 5:166562/148‑1 (MQ=255) cttGTTCGCCGGGTCCGCGTCGAACGACTTCGGCAGGGTGACCAGCAGGCCTTCGGAGGCGTTCTGGGCGATCTGCGAAATGGAGTCGTTACCCACGCCTTCCGGACCCATGAACTTGGCTTTCA‑GGCCTTTTTCCTGAGCCTGgcg > 6:87438/1‑147 (MQ=255) cttGTTCGCCGGGTCCGCGTCGAACGACTTCGGCAGGGTGACCAGCAGGCCTTCGGAGGCGTTCTGGGCGATCTGCGAAATGGAGTCGTTACCCACGCCTTCCGGACCCATGAACTTGGCTTTCA‑GGCCTTTTTCCTGAGCCTGgc < 7:190687/146‑1 (MQ=255) cttGTTCGCCGGGTCCGCGTCGAACGACTTCGGCAGGGTGACCAGCAGGCCTTCGGAGGCGTTCTGGGCGATCTGCGAAATGGAGTCGTTACCCACGCCTTCCGGACCCATGAACTTGGCTTTCA‑GGCCTTTTTCCTGAGCCTGgc < 3:180618/146‑1 (MQ=255) tCGCCGGGTCCGCGTCGAACGACTTCGGCAGGGTGACCAGCAGGCCTTCGGAGGCGTTCTGGGCGATCTGCGAAATGGAGTCGTTACCCACGCCTTCCGGACCCATGAACTTGGCTTTCA‑GGCCTTTTTCATGAGCCTGGCGCAGGAt > 6:228348/1‑148 (MQ=255) tCCGCGTCGAACGACTTCGGCAGGGTGACCAGCAGGCCTTCGGAGGCGTTCTGGGCGATCTGCGAAATGGAGTCGTTACCCACGCCTTCCGGACCCATGAACTTGGCTTTCA‑GGCCTTTTTCCTGAGCCTGGCGCAGGATCAGGCCCAg > 8:178308/1‑149 (MQ=255) aaCGACTTCGGCAGGGTGACCAGCTGGCCTTCGGAGGCGTTCTGAGCGATCTGCGAAATGGAGTCGTTACCCACGCCTTCCGGACCCATGAACTTGGCTTTCA‑GGCCTTTTTCCTGAGCCTGGCGCAGGATCAGGCCCAGCTCTGggtg < 8:79536/149‑1 (MQ=255) aaCGACTTCGGCAGGGTGACCAGCAGGCCTTCGGAGGCGTTCTGGGCGATCTGCGAAATGGAGTCGTTACCCACGCCTTCCGGACCCATGAACTTGGCTTTCA‑GGCCTTTTTCCTGAGCCTGGCGCAGGATCAGGCCCAGCTCTGggtg > 8:15914/1‑149 (MQ=255) cGACTTCGGCAGGGTGACCAGCAGGCCTTCGGAGGCGTTCTGGGCGATCTGCGAAATGGAGTCGTTACCCACGCCTTCCGGACCCATGAACTTGGCTTTCA‑GGCCTTTTTCCTGAGCCTGGCGCAGGATCAGGCCCAGCTCTggg > 7:58030/1‑145 (MQ=255) cGACTTCGGCAGGGTGACCAGCAGGCCTTCGGAGGCGTTCTGGGCGATCTGCGAAATGGAGTCGTTACCCACGCCTTCCGGACCCATGAACTTGGCTTTCA‑GGCCTTTTTCCTGAGCCTGGCGCAGGATCAGGCCCAGCTCTggg < 8:58030/145‑1 (MQ=255) gACTTCGGCAGGGTGACCAGCAGGCCTTCGGAGGCGTTCTGGGCGATCTGCGAAATGGAGTCGTTACCCACGCCTTCCGGACCCATGAACTTGGCTTTCA‑GGCCTTTTTCCTGAGCCTGGCGCAGGATCAGGCCCAGCTCTGGGTGGTa < 5:184126/149‑1 (MQ=255) ttCGGCAGGGTGACCAGCAGGCCTTCGGAGGCGTTCTGGGCGATCTGCGAAATGGAGTCGTTACCCACGCCTTCCGGACCCATGAACTTGGCTTTCA‑GGCCTTTTTCCTGATCCTGCGCCAGGCTCAgg > 5:328842/1‑129 (MQ=255) ttCGGCAGGGTGACCAGCAGGCCTTCGGAGGCGTTCTGGGCGATCTGCGAAATGGAGTCGTTACCCACGCCTTCCGGACCCATGAACTTGGCTTTCA‑GGCCTTTTTCCTGATCCTGCGCCAGGCTCAgg < 6:328842/129‑1 (MQ=255) ttCGGCAGGGCGACCAGCAGGCCTTCGGAGGCGTTCTGGGCGATCTGCGAAATGGAGTCGTTACCCACGCCTTCCGGACCCATGAACTTGGCTTTCA‑GGCCTTTTTCCTGAGCCTGGCGCAGGATCAGGCCCAGCTCTGGGTGGTAgcc > 5:150444/1‑149 (MQ=255) aGGGTGACCAGCAGGCCTTCGGAGGCGTTCTGGGCGATCTGCGAAATGGAGTCGTTACCCACGCCTTCCGGACCCATGAACTTGGCTTTCA‑GGCCTTTTTCCTGAGCCTGGCGCAGGATCAGGCCCAGCTCTGGGTGGTAGccgccg > 6:302761/1‑147 (MQ=255) tGACCAGCAGGCCTTCGGAGGCGTTCTGGGCGATCTGCGAAATGGAGTCGTTACCCACGCCTTCCGGACCCATGAACTTGGCTTTCA‑GGCCTTTTTCCTGAGCCTGGCGCAGGATCAGGCCCAGCTCTGGGTGGTAGCCGCCgtag > 7:25757/1‑146 (MQ=255) tGACCAGCAGGCCTTCGGAGGCGTTCTGGGCGATCTGCGAAATGGAGTCGTTACCCACGCCTTCCGGACCCATGAACTTGGCTTTCA‑GGCCTTTTTCCTGAGCCTGGCGCAGGATCAGGCCCAGCTCTGGGTGGTAGCCGCCGtagtag < 5:228348/149‑1 (MQ=255) aCCAGCAGGCCTTCGGAGGCGTTCTGGGCGATCTGCGAAATGGAGTCGTTACCCACGCCTTCCGGACCCATGAACTTGGCTTTCA‑GGCCTTTTTCCTGAGCCTGGCGCAGGATCAGGCCCAGCTCTGGGTGGTAGCCGCCGTAGTAGa < 1:145034/148‑1 (MQ=255) agGCCTTCGGAGGCGTTCTGGGCGATCTGCGAAATGGAGTCGTTACCCACGCCTTCCGGACCCATGAACTTGGCTTTCA‑GGCCTTTTTCCTGAGCCTGGCGCAGGATCAGGCCCAGCTCTGGGTGGTAGCCGCGGTAGTAGACGAAGTc < 7:178308/149‑1 (MQ=255) gCCTTCGGAGGCGTTCTGGGCGATCTGCGAAATGGAGTCGTTACCCACGCCTTCCGGACCCATGAACTTGGCTTTCA‑GGCCTTTTTCCTGAGCCTGGCGCAGGATCAGGCCCAGCTCTGGGTGGTAGCCGCCGTAGTAGACGAAGTCGa < 4:71686/149‑1 (MQ=255) ccTTCGGAGGCGTTCTGGGCGATCTGCGAAATGGAGTCGTTACCCACGCCTTCCGGACCCATGAACTTGGCTTTCA‑GGCCTTTTTCCTGAGCCTGGCGCAGGATCAGGCCCAGCTCTGGGTGGTAGCCGCCGTAGTAGACGAAGTCGAc < 5:302761/149‑1 (MQ=255) ccTTCGGAGGCGTTCTGGGCGATCTGCGAAATGGAGTCGTTACCCACGCCTTCCGGACCCATGAACTTGGCTTTCA‑GGCCTTTTTCCTGAGCCTGGCGCAGGATCAGGCCCAGCTCTGGGTGGTAGCCGCCGTAGTAGACGAAGTCGAc < 7:15914/149‑1 (MQ=255) ggAGGCGTTCTGGGCGATCTGCGAAATGGAGTCGTTACCCACGCCTTCCGGACCCATGAACTTGGCTTTCA‑GGCCTTTTTCCTGAGCCTGGCGCAGGATCAGGCCCAGCTCTGGGTGGTAGCCGCCGTAGTAGACGAAGTCGACgttgt > 7:44580/1‑149 (MQ=255) ggAGGCGTTCTGGGCGATCTGCGAAATGGAGTCGTTACCCACGCCTTCCGGACCCATGAACTTGGCTTTCA‑GGCCTTTTTCCTGAGCCTGGCGCAGGATCAGGCCCAGCTCTGGGTGGTAGCCGCCGTAGTAGACGAAGTCGACgttg < 8:25757/148‑1 (MQ=255) aGGCGTTCTGGGCGATCTGCGAAATGGAGTCGTTACCCACGCCTTCCGGACCCATGAACTTGGCTTTCA‑GGCCTTTTTCCTGAGCCTGGCGCAGGATCAGGCCCAGCTCTGGGTGGTAGCCGCCGTAGTAGACg > 1:163683/1‑134 (MQ=255) aGGCGTTCTGGGCGATCTGCGAAATGGAGTCGTTACCCACGCCTTCCGGACCCATGAACTTGGCTTTCA‑GGCCTTTTTCCTGAGCCTGGCGCAGGATCAGGCCCAGCTCTGGGTGGTAGCCGCCGTAGTAGACg < 2:163683/134‑1 (MQ=255) ttCTGGGCGATCTGCGAAATGGAGTCGTTACCCACGCCTTCCGGACCCATGAACTTGGCTTTCA‑GGCCTTTTTCCTGAGCCTGGCGCAGGATCAGGCCCAGCTCTGGGTGGTAGCCGCCGTAGTAGACGAAGTCGACGTTGTTCTGCtt < 8:44580/149‑1 (MQ=255) ggCGATCTGCGAAATGGAGTCGTTACCCACGCCTTCCGGACCCATGAACTTGGCTTTCA‑GGCCTTTTTCCTGAGCCTGGCGCAGGATCAGGCCGAGCTCTGggtgg < 3:150543/106‑1 (MQ=255) ggCGATCTGCGAAATGGAGTCGTTACCCACGCCTTCCGGACCCATGAACTTGGCTTTCA‑GGCCTTTTTCCTGAGCCTGGCGCAGGATCAGGCCCAGCTCTGggtgg > 4:150543/1‑106 (MQ=255) cGAAATGGAGTCGTTACCCACGCCTTCCGGACCCATGAACTTGGCTTTCAGGGCCTTTTTCCTGAGCCTGGCGCAGGATCAGGCCCAGGTCTGGGTGGTAGCCGCCGTAGTTGACGAAGTCGACGTGTTTGTGATTTAGCTTCTGgatg > 1:258573/1‑149 (MQ=255) gAGTCGTTACCCACGCCTTCCGGACCCATGAACTTGGCTTTCA‑GGCCTTTTTCCTGAGCCTGGCGCAGGATCAGGCCCAGCTCTGGGTGGTAGCCGCCGTAGTAGACGAAGTCGACGTTGTTCTGCTTGAGCTTCTGGATGATCgagga < 5:87438/149‑1 (MQ=255) gAGTCGTTACCCACGCCTTCCGGACCCATGAACTTGGCTTTCA‑GGCCTTTTTCCTGAGCCTGGCGCAGGATCAGGCCCAGCTCTGGGTGGTAGCCGCCGTAGTAGACGAAGTCGACGTTGTTCTGCTTGAGCTTCTGGATGATCgag > 4:293057/1‑147 (MQ=255) gTCGTTACCCACGCCTTCCGGACCCATGAACTTGGCTTTCA‑GGCCTTTTTCCTGAGCCTGGCGCAGGATCAGGCCCAGCTCTGGGTGGTAGCCGCCGTAGTAGACGAAGTCGACGTTGTTCTGCTTGAGCTTCTGGATGATCgag > 1:341551/1‑145 (MQ=255) gTCGTTACCCACGCCTTCCGGACCCATGAACTTGGCTTTCA‑GGCCTTTTTCCTGAGCCTGGCGCAGGATCAGGCCCAGCTCTGGGTGGTAGCCGCCGTAGTAGACGAAGTCGACGTTGTTCTGCTTGAGCTTCTGGATGATCgag < 2:341551/145‑1 (MQ=255) tCGTTACCCACGCCTTCCGGACCCATGAACTTGGCTTTCA‑GGCCTTTTTCCTGATCCTGGCGCAGCATCAGGCCAAGCTCTGGGTGGTAGCCGCCTTAGTAGACGAAGTCGACGTTGTTCTGCTTGAGGTTCTGGATGATCgaggat > 5:220673/1‑146 (MQ=255) gTTACCCACGCCTTCCGGACCCATGAACTTGGCTTTCA‑GGCCTTTTTCCTGAGCCTGGCGCAGGATCAGGCCCAGCTCTGGGTGGTAGCCGCCGTAGTAGACGAAGTCGACGTTGTTCTGCTTGAGCTTCTGGATGATCGAGGAGAAGt > 6:145486/1‑149 (MQ=255) ttACCCACGCCTTCCGGAACCATGAACTTGGCTTTCA‑GGCCTTTTTCCTGAGCCTGGCGCAGGATCAGGCCCAGCTCTGGGTGGTAGCCGCCGTAGTAGACGAAGTCGACGTTGTTCTGCTTGAGCTTCTGGATGATCGAGGAGAAGTc > 3:330994/1‑149 (MQ=255) aCCCACGCCTTCCGGACCCATGAACTTGGCTTTCA‑GGCCTTTTTCCTGAGCCTGGCGCAGGATCAGGCCCAGCTCTGGGTGGTAGCCGCCGTAGTAGACGAAGTCGACGTTGTTCTGCTTGAGCTTCTGGATGATCGAGGAGAAGTCCt > 1:166657/1‑149 (MQ=255) ccACGCCTTCCGGACCCATGAACTTGGCTTTCA‑GGCCTTTTTCCTGAGCCTGGCGCAGGATCAGGCCCAGCTCTGGGTGGTAGCCGCCGTAGTAGACGAAGTCGACGTTGTTCTGCTTGAGCTTCTGGATGATCGAGGAGAAGTCCTTg > 8:289523/1‑149 (MQ=255) cGCCTTCCGGACCCATGAACTTGGCTTTCA‑GGCCTTTTTCCTGAGCCTGGCGCAGGATCAGGCCCAGCTCTGGGTGGTAGCCGCCGTAGTAGACGAAGTCGACGTTGTTCTGCTTGAGCTTCTGGATGATCGAGGAGAAGTCCTTGTCa > 8:98978/1‑149 (MQ=255) tCCGGACCCATGAACTTGGCTTTCA‑GGCCTTTTTCCTGAGCCTGGCGCAGGATCAGGCCCAGCTCTGGGTGGTAGCCGCCGTAGTAGACGAAGTCGACGTTGTTCTGCTTGAGCTTCTGGATGATCGAGGAGAAGTCCTTGTCACCcgc > 3:60709/1‑149 (MQ=255) aCCCATGAACTTGGCTTTCA‑GTCCTTTTTCCTGAGCGTTGCGCAGGTTCAGGCCCAGCTCTGGGTGGTAGCCGCCGTAGTAGACGAAGTCGACGTTGTTCTGCTTGAGCTTCTGGATGATCGAGGAGAAGTCCTTGTCACCCGCGTTCa < 4:330994/149‑1 (MQ=255) aCCCATGAACTTGGCTTTCA‑GGCCTTTTTCCTGAGCCTGGCGCAGGATCAGGCCCAGCTCTGGGTGGTAGCCGCCGTAGTAGACGAAGTCGACGTTGTTCTGCTTGAGCTTCTGGATGATCGAGGAGAAGTCCTTGTCACCCGCGtt > 3:192620/1‑147 (MQ=255) ccATGAACTTGGCTTTCA‑GGCCTTTTTCCTGAGCCTGGCGCAGGATCAGGCCCAGCTCTGGGTGGTAGCCGCCGTAGTAGACGAAGTCGACGTTGTTCTGCTTGAGCTTCTGGATGATCGAGGAGAAGTCCTTGTCACCCGCGTTCAgg > 7:146310/1‑149 (MQ=255) ttGGCTTTCA‑GGCCTTTTTCCTGAGCCTGGCGCAGGATCAGGCCCAGCTCTGGCTGGTAGCCGCCGTAGTAGACGAAGTCGACGTTGTTCTGCTTGAGCTTCTGGATGATCGAGGAGAAGTCCTTGTCACCCGCGTTCAGGCCTTCGaa > 7:265640/1‑149 (MQ=255) cA‑GGCCTTTTTCCTGAGCCTGGCGCAGGATCAGGCCCAGCTCTGGGTGGTAGCCGCCGTAGTAGACGAAGTCGACGTTGTTCTGCTTGAGCTTCTGGATGATCGAGGAGAAGTCCTTGTCACCCGCGTTCAGGCCTTCGAACACg > 2:242336/1‑145 (MQ=255) cA‑GGCCTTTTTCCTGAGCCTGGCGCAGGATCAGGCCCAGCTCTGGGTGGTAGCCGCCGTAGTAGACGAAGTCGACGTTGTTCTGCTTGAGCTTCTGGATCATCGAGGAGAAGTCCTTGTCACCCGCGTTCAGGCCTTCGAACACg < 1:242336/145‑1 (MQ=255) ggCCTTTTTCCTGAGCCTGGCGCAGGATCAGGCCCAGCTCTGGGTGGTAGCCGCCGTAGTAGACGAAGTCGACGTTGTTCTGCTTGAGCTTCTGGATGATCGAGGAGAAGTCCTTGTCACCCGCGTTCAGGCCTTCGAACACGGCAAcc < 4:60709/149‑1 (MQ=255) tCCTGAGCCTGGCGCAGGATCAGGCCCAGCTCTGGGTGGTAGCCGCCGTAGTAGACGAAGTCGACGTTGTTCTGCTTGAGCTTCTGGATGATCGAGGAGAAGTCCTTGTCACCCGCGTTCAGGCCTTCGAACACGGCAACCTTGGTGcc > 3:98612/1‑149 (MQ=255) ccTGATCCTGCGCCAGGCTCAGGCCCAGCTCTGGGTGGTAGCCGCCGTAGTAGACGAAGTCGACGTTGTTCTGCTTGCGCTTCTGGATGATCGAGGAGAAGTCCTTGTCACCCGCGTTCAGGCCTTCGAACACGGCAACCTTGGTGc < 8:157862/147‑1 (MQ=255) ccTGATCCTGCGCCAGGCTCAGGCCCAGCTCTGGGTGGTAGCCGCCGTAGTAGACGAAGTCGACGTTGTTCTGCTTGAGCTTCTGGATGATCGAGGAGAAGTCCTTGTCACCCGCGTTCAGGCCTTCGAACACGGCAACCTTGGTGc > 7:157862/1‑147 (MQ=255) ccTGAGCCTGGCGCAGGATCAGGCCCAGCTCTGGGTGGTAGCCGCCGTAGTAGACGAAGTCGACGTTGTTCTGCTTGAGCTTCTGGATGATCGAGGAGAAGTCCTTGTCACCCGCGTTCAGGCCTTCGAACACGGCAACCTTGGTGCCt > 8:100860/1‑149 (MQ=255) ccTGAGCCTGGCGCAGGATCAGGCCCAGCTCTGGGTGGTAGCCGCCGTAGTAGACGAAGTCGACGTTGTTCTGCTTGAGCTTCTGGATGATCGAGGAGAAGTCCTTGTCACCCGCGTTCAGGCCTTCGAACACGGCAACCTTGGTGCCt > 7:224704/1‑149 (MQ=255) cTGAGCCTGGCGCAGGATCAGGCCCAGCTCTGGGTGGTAGCCGCCGTAGTAGACGAAGTCGACGTTGTTCTGCTTGAGCTTCTGGATGATCGAGGAGAAGTCCTTGTCACCCGCGTTCAGGCCTTCGAACACGGCAACCTTGGTGCCtt < 7:98978/149‑1 (MQ=255) cTGAGCCTGGCGCAGGATCAGGCCCAGCTCTGGGTGGTAGCCGCCGTAGTAGACGAAGTCGACGTTGTTCTGCTTGAGCTTCTGGATGATCGAGGAGAAGTCCTTGTCACCCGCGTTCAGGCCTTCGAACACGGCAACCTTGGTGCCt < 7:100860/148‑1 (MQ=255) aGCCTGGCGCAGGATCAGGCCCAGCTCTGGGTGGTAGCCGCCGTAGTAGACGAAGTCGACGTTGTTCTGCTTGAGCTTCTGGATGATCGAGGAGAAGTCCTTGTCACCCGCGTTCAGGCCTTCGAACACGGCAACCTTGGTGCCttt < 8:224704/147‑1 (MQ=255) ccTGGCGCAGGATCAGGCCCAGCTCTGGGTGGTAGCCGCCGTAGTAGACGAAGTCGACGTTGTTCTGCTTGAGCTTCTGGATGATCGAGGAGAAGTCCTTGTCACCCGCGTTCAGGCCTTCGAACACGGCAACCTTGGTGCCTTTGCtt < 4:98612/149‑1 (MQ=255) | CTTGTTCGCCGGGTCCGCGTCGAACGACTTCGGCAGGGTGACCAGCAGGCCTTCGGAGGCGTTCTGGGCGATCTGCGAAATGGAGTCGTTACCCACGCCTTCCGGACCCATGAACTTGGCTTTCA‑GGCCTTTTTCCTGAGCCTGGCGCAGGATCAGGCCCAGCTCTGGGTGGTAGCCGCCGTAGTAGACGAAGTCGACGTTGTTCTGCTTGAGCTTCTGGATGATCGAGGAGAAGTCCTTGTCACCCGCGTTCAGGCCTTCGAACACGGCAACCTTGGTGCCTTTGCTT > NC_002947/1306772‑1307060 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |