Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_002947 1,310,445 T→A 6.3% D363V (GAC→GTC)  PP_1144 ← membrane protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0029471,310,4450TA 6.3% 181.0 / 2.3 63D363V (GAC→GTC) PP_1144membrane protein
Reads supporting (aligned to +/- strand):  ref base T (28/31);  new base A (2/2);  total (30/33)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.25e-01

GTGGTCATGACCATGCGCCGCCCGCCCAGGTCGATGGGGTCTTTCATCCGTTGCATGATGCGCTGGGCCAGGTGGCGGGCTTCGTCGCGGCTGTTCAGGCTGGTGACCACACAGAACTCGTCGCCACCAAAGCGCGCAACCAGGTCGTGGTTGCGGGTAGCGGCCTTGATGTGGTTGGCGATCACCTTGAGCAGCTCGTCACCGGCGTCGTGGCCAAGGCTGTCGTTGATACGCTTGAAATGGTCGATGTCGAGGAACATGACAGCCAGGCGGTTTTCGCTGGCCTGATGTT  >  NC_002947/1310301‑1310592
                                                                                                                                                |                                                                                                                                                   
gtggtCATGACCATGCGCCGCCCGCCCAGGTCGATGGGGTCTTTCATCCGTTGCATGATGCGCTGGGCCAGGTGGCGGGCTTCGTCGCGGCTGTTCAGGCTGGTGACCACACAGAACTCGTCGCCACCAAAGCGCGCAACCAGGTCGTg                                                                                                                                                 <  2:54161/149‑1 (MQ=255)
gtggtCATGACCATGCGCCGCCCGCCCAGGTCGATGGGGTCTTTCATCCGTTGCATGATGCGCTGGGCCAGGTGGCGGGCTTCGTCGCGGCTGTTCAGGCTGGTGACCACACAGAACTCGTCGCCACCAAAGCGCGCAACCAGGTCGTg                                                                                                                                                 <  2:59112/149‑1 (MQ=255)
gtggtCATGACCATGCGCCGCCCGCCCAGGTCGATGGGGTCTTTCATCCGTTGCATGATGCGCTGGGCCAGGTGGCGGGCTTCGTCGCGGCTGTTCAGGCTGGTGACCACACAGAACTCGTCGCCACCAAAGCGCGCAACCAGGTCGTg                                                                                                                                                 <  6:278439/149‑1 (MQ=255)
   gtCATGACCATGCGCCGCCCGCCCAGGTCGATGGGGTCTTTCATCCGTTGCATGATGCGCTGGGCCAGGTGGCGGGCTTCGTCGCGGCTGTTCAGGCTGGTGACCACACAGAACTCGTCGCCACCAAAGCGCGCAACCAGGTCGTGGtt                                                                                                                                              >  5:111042/1‑149 (MQ=255)
    tCATGACCATGCGCCGCCCGCCCAGGGCGATGGGGTCTTTCATCCGTTGCATGATGCGCTGGGCCAGGTGGCGGGCTTCGTCGCGGCTGTTCAGGCTGGTGACCACACAGAACTCGTCGCCACCAAAGCGCGCAACCAGGTCGTGGTTg                                                                                                                                             <  5:208529/149‑1 (MQ=255)
        gACCATGCGCCGCCCGCCCAGGTCGATGGGGTCTTTCATCCGTTGCATGATGCGCTGGGCCAGGTGGCGGGCTTCGTCGCGGCTGTTCAGGCTGGTGACCACACAGAACTCGTCGCCACCAAAGCGCGCAACCAGGTCGTGGTTGCg                                                                                                                                           <  5:195026/147‑1 (MQ=255)
        gACCATGCGCCGCCCGCCCAGGTCGATGGGGTCTTTCATCCGTTGCATGATGCGCTGGGCCAGGTGGCGGGCTTCGTCGCGGCTGTTCAGGCTGGTGACCACACAGAACTCGTCGCCACCAAAGCGCGCAACCAGGTCGTGGTTGCg                                                                                                                                           >  6:195026/1‑147 (MQ=255)
           cATGCGCCGCCCGCCCAGGTCGATGGGGTCTTTCATCCGTTGCATGATGCGCTGGGCCAGGTGGCGGGCTTCGTCGCGGCTGTTCAGGCTGGTGACCACACAGAACTCGTCGCCACCAAAGCGCGCAACCAGGTCGTGGTTGCGGGTAg                                                                                                                                      >  5:88680/1‑149 (MQ=255)
           cATGCGCCGCCCGCCCAGGTCGATGGGGTCTTTCATCCGTTGCATGATGCGCTGGGCCAGGTGGCGGGCTTCGTCGCGGCTGTTCAGGCTGGTGACCACACAGAACTCGTCGCCACCAAAGCGCGCAACCAGGTCGTGGTTGCGGGTAg                                                                                                                                      >  1:341885/1‑149 (MQ=255)
           cATGCGCCGCCCGCCCAGGTCGATGGGGTCTTTCATCCGTTGCATGATGCGCTCGGCCAGGTGGCGGGCTTCGTCGCGGCTGTTCAGGCTGGTGACCACACAGAACTCGTCGCCAACAAAGCGCGCAACCAGGTCGACGTTGCGGGTAg                                                                                                                                      >  2:249218/1‑149 (MQ=255)
             tGCGCCGCCCGCCCAGGTCGATGGGGTCTTTCATCCGTTGCATGATGCGCTGGGCCAGGTGGCGGGCTTCGTCGCGGCTGTTCAGGCTGGTGACCACACAGAACTCGTCGCCACCAAAGCGCGCAACCACGACCTGGTTGCgcgctttg                                                                                                                                    <  4:179617/149‑8 (MQ=255)
               cgccgcCCGCCCAGGTCGATGGGGTCTTTCATCCGTTGCATGATGCGCTGGGCCAGGTGGCGGGCTTCGTCGCGGCTGTTCAGGCTGGTGACCACACAGAACTCGTCGCCACCAAAGCGCGCAACCAGGTCGTGGTTGCGGGTAGCGGc                                                                                                                                  <  1:165181/149‑1 (MQ=255)
                 ccgcccgcCCAGGTCGATGGGGTCTTTCATCCGTTGCATGATGCGCTGGGCCAGGTGGCGGGCTTCGTCGCGGCTGTTCAGGCTGGTGACCACACAGAACTCGTCGCCACCAAAGCGCGCAACCAGGTCGTGGTTGCGGGTAGCGGCCt                                                                                                                                <  2:341885/149‑1 (MQ=255)
                  cgcccgccCAGGTCGATGGGGTCTTTCATCCGTTGCATGATGCGCTGGGCCAGGTGGCGGGCTTCGTCGCGGCTGTTCAGGCTGGTGACCACACAGAACTCGTCGCCACCAAAGCGCGCAACCAGGTCGTGGTTGCGGGTAGCGGCCtt                                                                                                                               <  6:88680/149‑1 (MQ=255)
                   gcccgcccAGGTCGATGGGGTCTTTCATCCGTTGCATGATGCGCTGGGCCAGGTGGCGGGCTTCGTCGCGGCTGTTCAGGCTGGTGACCACACAGAACTCGTCGCCACCAAAGCGCGCAACCAGGTCGTGGTTGCGGGTAGCGGCCtt                                                                                                                               >  1:109782/1‑148 (MQ=255)
                   gcccgcccAGGTCGATGGGGTCTTTCATCCGTTGCATGATGCGCTGGGCCAGGTGGCGGGCTTCGTCGCGGCTGTTCAGGCTGGTGACCACACAGAACTCGTCGCCACCAAAGCGCGCAACCACGACCTGGTTGCgc                                                                                                                                          <  7:200198/137‑2 (MQ=255)
                   gcccgcccAGGTCGATGGGGTCTTTCATCCGTTGCATGATGCGCTGGGCCAGGTGGCGGGCTTCGTCGCGGCTGTTCAGGCTGGTGACCACACAGAACTCGTCGCCACCAAAGCGCGCAACCACGACCTGGTTGCgc                                                                                                                                          >  8:200198/1‑136 (MQ=255)
                         ccAGCTCGATTGGGGCTTGCATCCGCTGCATCATGCGCTGGGCCAGGTGGCTGTCTTCGTCGCGGCTTTTCAGGCTGGTGACCACACAGAACTCGTCGCCACCAAATCGCGCAACCAGGTCGTGGTTGCGGGTAGCGGCCTTGAtgtgt                                                                                                                        <  8:142281/149‑2 (MQ=255)
                            ggTCGATGGGGTCTTTCATCCGTTGCATGATGCGCTGGGCCAGGTGGCGGGCTTCGTCGCGGCTGTTCAGGCTGGTGACCACACAGAACTCGTCGCCACCAAAGCGCGCAACCAGGTCGTGGTTGCGGGTAGCGGCCTTGATGTGGTTg                                                                                                                     <  1:249218/149‑1 (MQ=255)
                                gATGGGGTCTTTCATCCGTTGCATGATGCGCTGGGCCAGGTGGCGGGCTTCGTCGCGGCTGTTCAGGCTGGTGACCACACAGAACTCGTCGCCACCAAAGCGCGCAACCAGGTCGTGGTTGCGGGTAGCGGCCTTGATGTGGTTGGCg                                                                                                                  <  1:80169/148‑1 (MQ=255)
                                gATGGGGTCTTTCATCCGTTGCATGATGCGCTGGGCCAGGTGGCGGGCTTCGTCGCGGCTGTTCAGGCTGGTGACCACACAGAACTCGTCGCCACCAAAGCGCGCAACCAGGTCGTGGTTGCGGGTAGCGGCCTTGATGTGGTTGGCGa                                                                                                                 >  7:282811/1‑149 (MQ=255)
                                  tGGGGTCTTTCATCCGTTGCATGATGCGCTGGGCCAGGTGGCGGGCTTCGTCGCGGCTGTTCAGGCTGGTGACCACACAGAACTCGTCGCCACCAAAGCGCGCAACCAGGTCGTGGTTGCGGGTAGCGGCCTTGATGTGGTTGGCGATc                                                                                                               <  5:93938/149‑1 (MQ=255)
                                           tCATCCGTTGCATGATGCGCTGGGCCAGGTGGCGGGCTTCGTCGCGGCTGTTCAGGCTGGTGACCACACAGAACTCGTCGCCACCAAAGCGCGCAACCAGGTCGTGGTTGCGGGTAGCGGCCTTGATGTGGTTGGCGATCACCTTGag                                                                                                       >  2:262456/1‑148 (MQ=255)
                                                cGTTGCATGATGCGCTGGGCCAGGTGGCGGGCTTCGTCGCGGCTGTTCAGGCTGGTGACCACACAGAACTCGTCGCCACCAAAGCGCGCAACCAGGTCGTGGTTGCGGGTAGCGGCCTTGATGTGGTTGGCGATCACCTTGAGCAGCTc                                                                                                 <  8:282811/149‑1 (MQ=255)
                                                        gatgCGCTGGGCCAGGTGGCGGGCTTCGTCGCGGCTGTTCAGGCTGGTGACCACACAGAACTCGTCGCCACCAAAGCGCGCAACCAGGTCGTGGTTGCGGGTAGCGGCCTTGATGTGGTTGGCGATCACCTTGAGCAGCTCGTCACCgg                                                                                         >  3:167286/1‑149 (MQ=255)
                                                          tgCGCTGGGCCAGGTGGCGGGCTTCGTCGCGGCTGTTCAGGCTGGTGACCACACAGAACTCGTCGCCACCAAAGCGCGCAACCAGGTCGTGGTTGCGGGTAGCGGCCtt                                                                                                                               >  1:120035/1‑109 (MQ=255)
                                                          tgCGCTGGGCCAGGTGGCGGGCTTCGTCGCGGCTGTTCAGGCTGGTGACCACACAGAACTCGTCGCCACCAAAGCGCGCAACCAGGTCGTGGTTGCGGGTAGCGGCCtt                                                                                                                               <  2:120035/109‑1 (MQ=255)
                                                            cgcTGGGCCAGGTGGCGGGCTTCGTCGCGGCTGTTCAGGCTGGTGACCACACAGAACTCGTCGCCACCAAAGCGCGCAACCAGGTCGTGGTTGCGGGTAGCGGCCTTGATGTGGTTGGCGATCACCTTGAGCAGCTCGTCACCGGcgtc                                                                                     <  8:226166/149‑1 (MQ=255)
                                                             gcTGGGCCAGGTGGCGGGCTTCGTCGCGGCTGTTCAGGCTGGTGACCACACAGAACTCGTCGCCACCAAAGCGCGCAACCAGGTCGTGGTTGCGGGTAGCGGCCTTGATGTGGTTGGCGATCACCTTGAGCAGCTCGTCACCGGcgtcg                                                                                    >  3:298719/1‑149 (MQ=255)
                                                                      ggTGGCGGGCTTCGTCGCGGCTGTTCAGGCTGGTGACCACACAGAACTCGTCGCCACCAAAGCGCGCAACCAGGTCGTGGGTGCGGGTAGCGGCCTTGATGTGCTTGGCGATCACCTTGAGCAGCTCGTCACCGGCGTCGTGGCCAAgg                                                                           <  6:111042/149‑1 (MQ=255)
                                                                       gTGGCGGGCTTCGTCGCGGCTGTTCAGGCTGGTGACCACACAGAACTCGTCGCCACCAAAGCGCGCAACCAGGTCGTGGTTGCGGGTAGCGGCCTTGATGTGGTTGGCGATCACCTTGAGCAGCTCGTCACCGGCGTCGTGGCCAAGGc                                                                          >  1:97285/1‑149 (MQ=255)
                                                                          gCGGGCTTCGTCGCGGCTGTTCAGGCTGGTGACCACACAGAACTCGTCGCCACCAAAGCGCGCAACCAGGTCGTGGTTGCGGGTAGCGGCCTTGATGTGGTTGGCGATCACCTTGAGCAGCTCGTCACCGGCGTCGTGGCCAAGGCTg                                                                        <  4:167286/148‑1 (MQ=255)
                                                                                       cgGCTGTTCAGGCTGGTGACCACACAGAACTCGTCGCCACCAAAGCGCGCAACCAGGTCGTGGTTGCGGGTAGCGGCCTTGATGTGGTTGGCGATCACCtt                                                                                                          <  2:343379/101‑1 (MQ=255)
                                                                                       cgGCTGTTCAGGCTGGTGACCACACAGAACTCGTCGCCACCAAAGCGCGCAACCAGGTCGTGGTTGCGGGTAGCGGCCTTGATGTGGTTGGCGATCACCtt                                                                                                          >  1:343379/1‑101 (MQ=255)
                                                                                           tGTTCAGGCTGGTGACCACACAGAACTCGTCGCCACCAAAGCGCGCAACCAGGTCGTGGTTGCGGGTAGCGGCCTTGATGTGGTTg                                                                                                                     <  4:71893/86‑1 (MQ=255)
                                                                                           tGTTCAGGCTGGTGACCACACAGAACTCGTCGCCACCAAAGCGCGCAACCAGGTCGTGGTTGCGGGTAGCGGCCTTGATGTGGTTg                                                                                                                     >  3:71893/1‑86 (MQ=255)
                                                                                               cAGGCTGGTGACCACACAGAACTCGTCGCCACCAAAGCGCGCAACCAGGTCGTGGTTGCGGGTAGCGGCCTTGATGTGGTTGGCGATCACCTTGAGCAGCTCGTCACCGGCGTCGTGGCCAAGGCTGTCGTTGATACGCTTGAAATGGt                                                  >  7:170166/1‑149 (MQ=255)
                                                                                                aGGCTGGTGACCACACAGAACTCGTCGCCACCAAAGCGCGCAACCAGGTCGTGGTTGCGGGTAGCGGCCTTGATGTGGTTGGCGATCACCTTGAGCAGCTCGTCACCGGCGTCGTGGCCAAGGCTGTCGTTGATACGCTTGAAATGGTc                                                 <  1:168385/149‑1 (MQ=255)
                                                                                                             cacaGAACTCGTCGCCACCAAAGCGCGCAACCAGGTCGTGGTTGCGGGTAGCGGCCTTGATGTGGTTGGCGATCACCTTGAGCAGCTCGTCACCGGCGTCGTGGCCAAGGCTGTCGTTGATACGCtt                                                          <  1:3086/127‑1 (MQ=255)
                                                                                                             cacaGAACTCGTCGCCACCAAAGCGCGCAACCAGGTCGTGGTTGCGGGTAGCGGCCTTGATGTGGTTGGCGATCACCTTGAGCAGCTCGTCACCGGCGTCGTGGCCAAGGCTGTCGTTGATACGCtt                                                          >  2:3086/1‑127 (MQ=255)
                                                                                                             cacaGAACTCGTCGCCACCAAAGCGCGCAACCAGGTCGTGGTTGCGGGTAGCGGCCTTGATGTGGTTGGCGATCACCTTGAGCAGCTCGTCACCGGCGTCGTGGCCAAGGCTGTCGTTGATACGCTTGAAATGGTCGATGTCGAGGaa                                     >  2:159566/1‑148 (MQ=255)
                                                                                                              acaGAACTCGTCGCCACCAAAGCGCGCAACCAGGTCGTGGTTGCGGGTAGCGGCCTTGATGTGGTTGGCGATCACCTTGAGCAGCTCGTCACCGGCGTCGTg                                                                                  <  1:31846/102‑1 (MQ=255)
                                                                                                              acaGAACTCGTCGCCACCAAAGCGCGCAACCAGGTCGTGGTTGCGGGTAGCGGCCTTGATGTGGTTGGCGATCACCTTGAGCAGCTCGTCACCGGCGTCGTg                                                                                  >  2:31846/1‑102 (MQ=255)
                                                                                                              acaGAACTCGTCGCCACCAAAGCGCGCAACCAGGTCGTGGTTGCGGGTAGCGGCCTTGATGTGGTTGGCGATCACCTTGAGCAGCTCGTCACCGGCGTCGTGGCCAAGGCTGTCGTTGATACGCTTGAAATGGTCGATGTCGAGGAACa                                   >  2:161912/1‑149 (MQ=255)
                                                                                                               caGAACTCGTCGCCACCAAAGCGCGCAACCAGGTCGTGGTTGCGGGTAGCGGCCTTGATGTGGTTGGCGATCACCTTGAGCAGCTCGTCACCGGCGTCGTGGCCAAGGCTGTCGTTGATACGCTTGAAATGGTCGATGTCGAGGAACAt                                  <  4:298719/149‑1 (MQ=255)
                                                                                                                aGAACTCGTCGCCACCAAAGCGCGCAACCAGGTCGTGGTTGCGGGTAGCGGCCTTGATGTGGTTGGCGATCACCTTGAGCAGCTCGTCACCGGCGTCGTg                                                                                  >  3:15342/1‑100 (MQ=255)
                                                                                                                aGAACTCGTCGCCACCAAAGCGCGCAACCAGGTCGTGGTTGCGGGTAGCGGCCTTGATGTGGTTGGCGATCACCTTGAGCAGCTCGTCACCGGCGTCGTg                                                                                  <  4:15342/100‑1 (MQ=255)
                                                                                                                  aaCTCGTCGCCACCAAAGCGCGCAACCAGGTCGTGGTTGCGGGTAGCGGCCTTGATGTGGTTGGCGATCACCTTGAGCAGCTCGTCACCGGCGTCGTGGCCAAGGCTGTCGTTGATACGCTTGAAATGGTCGATGTCGAGGAACATGa                                >  2:82076/1‑148 (MQ=255)
                                                                                                                   aCTCGTCGCCACCAAAGCGCGCAACCAGGTCGTGGTTGCGGGTAGCGGCCTTGATGTGGTTGGCGATCACCTTGAGCAGCTCGTCACCGGCGTCGTGGCCAAGGCTGTCGTTGATACGCTTGAAATGGTCGATGTCGAGGAACATGACa                              <  1:82076/149‑1 (MQ=255)
                                                                                                                            caccaAAGCGCGCAACCAGGTCGTGGTTGCGGGTAGCGGCCTTGATGTGGTTGGCGATCACCTTGAGCAGCTCGTCACCGGCGTCGTGGCCAAGGCTGTCGTTGATACGCTTGAAATGGTCGATGTCGAGGAACATGACAGc                            <  1:330522/142‑1 (MQ=255)
                                                                                                                            caccaAAGCGCGCAACCAGGTCGTGGTTGCGGGTAGCGGCCTTGATGTGGTTGGCGATCACCTTGAGCAGCTCGTCACCGGCGTCGTGGCCAAGGCTGTCGTTGATACGCTTGAAATGGTCGATGTCGAGGAACATGACAGc                            >  2:330522/1‑142 (MQ=255)
                                                                                                                            caccaAAGCGCGCAACCAGGTCGTGGTTGCGCGTAGCGGCCTTGATGTGGTTGGCGATCACCTTGAGCAGCTCGTCACCGGCGTCGTGGCCAAGGCTGTCGTTGATACGCTTGAAATGGACGATGACTAGGAACATgacagacatcgg                      >  1:26847/1‑144 (MQ=255)
                                                                                                                                   gcgcgcAACCAGGTCGTGGTTGCGGGTAGCGGCCTTGATGTGGTTGGCGATCACCTTGAGCAGCTCGTCACCGGCGTCGTGGCCAAGGCTGTCGTTGATACGCTTGAAATGGTCGATGTCGAGGAACATGACAGCCAGGCGGTTTTCGc              <  2:109782/149‑1 (MQ=255)
                                                                                                                                     gcgcAACCAGGTCGTGGTTGCGGGTAGCGGCCTTGATGTGGTTGGCGATCACCTTGAGCAGCTCGTCACCGGCGTCGTGGCCAAGGCTGTCGTTGATACGCTTGAAATGGTCGATGTCGAGGAACATGACAGCCAGGCGGTTTTCGCTg            >  2:250125/1‑149 (MQ=255)
                                                                                                                                      cgcAACCACGACCTGGTTGCGGGTAGCGGCCTTGATGTGGTTGGCGATCACCTTGAGCAGCTCGTCACCGGCGTCGTGGCCAAGGCTGTCGTTGATACGCTTGAAATGGTCGATGTCGAGGAACATGACAGCCAGGCGGTTTTCGCTgg           >  3:58563/1‑149 (MQ=255)
                                                                                                                                       gcAACCAGGTCGTGGTTGCGGGTAGCGGCCTTGATGTGGTTGGCGATCACCTTGAGCAGCTCGTCACCGGCGTCGTGGCCAAGGCTGTCGTTGATACGCTTGAAATGGTCGATGTCGAGGAACATGACAGCCAGGCGGTTTTCGCTGGc          <  5:234571/149‑1 (MQ=255)
                                                                                                                                           ccAGGTCGTGGTTGCGGGTAGCGGCCTTGATGTGGTTGGCGATCACCTTGAGCAGCTCGTCACCGGCGTCGTGGCCAAGGCTGTCGTTGATACGCTTGAAATGGTCGATGTCGAGGAACATGACAGCCAGGCGGTTTTCGCTg            <  1:108156/143‑1 (MQ=255)
                                                                                                                                           ccAGGTCGTGGTTGCGGGTAGCGGCCTTGATGTGGTTGGCGATCACCTTGAGCAGCTCGTCACCGGCGTCGTGGCCAAGGCTGTCGTTGATACGCTTGAAATGGTCGATGTCGAGGAACATGACAGCCAGGCGGTTTTCGCTg            >  2:108156/1‑143 (MQ=255)
                                                                                                                                            cAGGTCGTGGTTGCGGGTAGCGGCCTTGATGTGGTTGGCGATCACCTTGAGCAGCTCGTCACCGGCGTCGTGGCCAAGGCTGTCGTTGATACGCTTGAAATGGTCGATGTCGAGGAACATGACAGCCAGGCGGTTTTCGCTGGCCTGAt     <  1:262456/149‑1 (MQ=255)
                                                                                                                                             aGGTCGTGGTTGCGGGTAGCGGCCTAGATGTGGTTGGCGATCACCTTGAGCAGCTCGTCACCGGCGTCGTGGCCAAGGCTGTCGTTGATACGCTTGAAATGGTCGATGTCGAGGAACATGACAGCCAGGCGGTTTTCGCTGGCCTGATg    >  8:84987/1‑149 (MQ=255)
                                                                                                                                              ggTCGTGGTTGCGGGTAGCGGCCTTGATGTGGTTGGCGATCACCTTGAGCAGCTCGTCACCGGCGTCGTGGCCAAgg                                                                           <  4:233984/77‑1 (MQ=255)
                                                                                                                                              ggTCGTGGTTGCGGGTAGCGGCCTTGATGTGGTTGGAGATCACCTTGAGCAGCTCGTCACCGGCGTCGTGGCCAAgg                                                                           >  3:233984/1‑77 (MQ=255)
                                                                                                                                               gTCGTGGTTGCGGGTAGCGGCCTTGATGTGGTTGGCGATCACCTTGAGCAGCTCGTCACCGGCGTCGTGGCCAAGGCTGTCGTTGATACGCTTGAAATGGTCGATGTCGAGGAACATGACAGCCAGGCGGTTTTCGCTGGCCTGATGtt  >  5:154229/1‑149 (MQ=255)
                                                                                                                                                tCGTGGTTGCGGGTAGCGGCCTTGATGTGGTTGGCGATCACCTTGAGCAGCTCGTCACCGGCGTCGTGGCCAAGGCTGt                                                                       <  3:39275/79‑1 (MQ=255)
                                                                                                                                                tCGTGGTTGCGGGTAGCGGCCTTGATGTGGTTGGCGATCACCTTGAGCAGCTCGTCACCGGCGTCGTGGCCAAGGCTGt                                                                       >  4:39275/1‑79 (MQ=255)
                                                                                                                                                |                                                                                                                                                   
GTGGTCATGACCATGCGCCGCCCGCCCAGGTCGATGGGGTCTTTCATCCGTTGCATGATGCGCTGGGCCAGGTGGCGGGCTTCGTCGCGGCTGTTCAGGCTGGTGACCACACAGAACTCGTCGCCACCAAAGCGCGCAACCAGGTCGTGGTTGCGGGTAGCGGCCTTGATGTGGTTGGCGATCACCTTGAGCAGCTCGTCACCGGCGTCGTGGCCAAGGCTGTCGTTGATACGCTTGAAATGGTCGATGTCGAGGAACATGACAGCCAGGCGGTTTTCGCTGGCCTGATGTT  >  NC_002947/1310301‑1310592

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: