| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 1,506,930 | T→C | 7.4% | intergenic (+51/‑66) | petC → / → sspA | ubiquinol‑‑cytochrome c reductase cytochrome c1 subunit/stringent starvation protein A |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 1,506,930 | 0 | T | C | 7.4% | 232.2 / 7.1 | 81 | intergenic (+51/‑66) | petC/sspA | ubiquinol‑‑cytochrome c reductase cytochrome c1 subunit/stringent starvation protein A |
| Reads supporting (aligned to +/- strand): ref base T (33/42); new base C (3/3); total (36/45) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.18e-01 | |||||||||||
AGCGCATCGGCACCTATGTGTTGCTGTATCTGGCTTTCTTCTTCGTATTCGCCTACTTGCTCAAGCGTGAATACTGGAAGGACGTGCACTGATCACGCAGTAGTTTCTGGTT‑GTTGAACGCGCCCGGGGTGGCCTAGCAGTATTGCCAGGCCACCCCGGGCGCGTTTTCATTTAAAGTTGCACAAGCATCCGTGCGAGGAGCCGCTACATGGGCGCAACCAACAGGTTAGCCTGCTATTCCGATCCCGCTGATCACTATTCTCATCGGGTTCGCCTGGTTCTGGCCG > NC_002947/1506788‑1507074 | aGCGCATCGGCACCTATGTGTTGCTGTATCTGGCTTTCTTCTTCGTATTCGCCTACTTGCTCAAGCGTGAATAGTGGAAGGACGTGCACTGATCACGCAGTAGTTTCTGGTT‑GTTGAACGCGCCCGGGGTGGCCTAGCAGTATTGCCAg < 2:121692/149‑1 (MQ=255) cgcATCGGCACCTATGTGTTGCTGTATCTGGCTTTCTTCTTCGTATTCGCCTACTTGCTCAAGCGTGAATACTGGAAGGACGTGCACTGATCACGCAGTAGTTTCTGGTT‑GTTGAACGCGCCCGGGGTGGCCTGGCAATACTGCTAGGc < 8:144000/149‑1 (MQ=255) gCACCTATGTGTTGCTGTATCTGGCTTTCTTCTTCGTATTCGCCTACTTGCTCAAGCGTGAATACTGGAAGGACGTGCACTGATCACGCAGTAGTTTCTGGTT‑GTTGAACGCGCCCGGGGTGGCCTAGCAGTATTGCCAGGCCACCCCg > 6:21334/1‑149 (MQ=255) cACCTATGTGTTGCTGTATCTGGCTTTCTTCTTCGTATTCGCCTACTTGCTCAAGCGTGAATACTGGAAGGACGTGCACTGATCACGCAGTAGTTTCTGGTT‑GTTGAACGCGCCCGGGGTGGCCTGGCAATACTGCTAGGCCACCCCgg < 2:312747/149‑1 (MQ=255) cACCTATGTGTTGCTGTATCTGGCTTTCTTCTTCGTATTCGCCTACTTGCTCAAGCGTGAATACTGGAAGGACGTGCACTGATCACGCAGTAGTTTCTGGTT‑GTTGAACGCGCCCGGGGTGGCCTAGCAGTATTGCCAGGCCACCCCgg > 4:219532/1‑149 (MQ=255) tgtTGCTGTATCTGGCTTTCTTCTTCGTATTCGCCTACTTGCTCAAGCGTGAATACTGGAAGGACGTGCACTGATCACGCAGTAGTTTCTGGTT‑GTTGAACGCGCCCGGGGTGGCCTAGCAGTATTGCCAGGCCACCCCGGGCGCGttt < 7:205500/149‑1 (MQ=255) gtTGCTGTATCTGGCTTTCTTCTTCGTATTCGCCTACTTGCTCAAGCGTGAATACTGGAAGGACGTGCACTGATCACGCAGTAGTTTCTGGTT‑GTTGAACGCGCCCGGGGTGGCCTAGCAGTATTGCCAGGCCACCCCGGGCGCGtttt > 8:137856/1‑149 (MQ=255) ttGCTGTATCTGGCTTTCTTCTTCGTATTCGCCTACTTGCTCAAGCGTGAATACTGGAAGGACGTGCACTGATCACGCAGTAGTTTCTGGTT‑GTTGAACGCGCCCGGGGTGGCCTAGCAGTATTGCCAGGCCACCCCGGGCGCGTTTTc < 3:219532/149‑1 (MQ=255) cTGTATCTGGCTTTCTTCTTCGTATTCGCCTACTTGCTCAAGCGTGAATACTGGAAGGACGTGCACTGATCACGCAGTAGTTTCTGGTT‑GTTGAACGCGCCCGGGGTGGCCTAGCAGTATTGCCAGGCCACCCCGGGCGCCTTTTCaat > 3:211200/1‑147 (MQ=255) cTGTATCTGGCTTTCTTCTTCGTATTCGCCTACTTGCTCAAGCGTGAATACTGGAAGGACGTGCACTGAGCACGCAGTAGTTTCTGGTT‑GTTGAACGCGCCCGGGGTGGCCTAGCAGTATTGCCAGGCCACCCCGGGCGCGTTTTCAt < 7:131953/148‑1 (MQ=255) tCTGGCTTTCTTCTTCGTATTCGCCTACTTGCTCAAGCGTGAATACTGGAAGGACGTGCACTGATCACGCAGTAGTTTCTGGTT‑GTTGAACGCGCCCGGGGTGGCCTAGCAGTATTGCCAg > 8:155470/1‑121 (MQ=255) cTGGCTTTCTTCTTCGTATTCGACTACTTGCTCAAGGGTGATTTCTGGAAGGACGTGCACTGATCACTCAGTAGTTTCTTGTT‑GTTGAACGCGCCCGGGGTGGCCTAGCAGTATTGCCAGGCCACCCCGGGCGCGTTTTCATTTAAAg < 7:127002/148‑1 (MQ=255) ggCTTTCTTCTTCGTATTCGCCTACTTGCTCAAGCGTGAATACTGGAAGGACGTGCACTGATCACGCAGTAGTTTCTGGTT‑GTTGAACGCGCCCGGGGTGGCCTAGCAGTATTGCCAGGCCACCCCGGGCGCGTTTTCATTTAAAGTTg > 6:24633/1‑149 (MQ=255) gatttGTTCTTCGTTTTCGCCTACTTGCTCATGCGTGAATACTGTAAGGACGTGCACTGATCACGCAGTAGTTTATGGTT‑GTTGAACGCGCCCGGGGTGTCCTAGCAGTATTGCCAGGCCACCCCGGGCGCGTTTTCATTTAAAGtt < 4:211200/145‑1 (MQ=255) gCTTTCTTCTTCGTATTCGCCTACTTGCTCAAGCGTGAATACTGGAAGGACGTGCACTGATCACGCAGTAGTTTCTGGTT‑GTTGAACGCGCCCGGGGTGGCCTAGCAGTATTGCCAGGCCACCCCGGGCGCGTTTTCATTTAAAGtt < 6:86627/147‑1 (MQ=255) gCTTTCTTCTTCGTATTCGCCTACTTGCTCAAGCGTGAATACTGGAAGGACGTGCACTGATCACGCAGTAGTTTCTGGTT‑GTTGAACGCGCCCGGGGTGGCCTAGCAGTATTGCCAGGCCACCCCGGGCGCGTTTTCATTTAAAGtt < 4:126808/147‑1 (MQ=255) gCTTTCTTCTTCGTATTCGCCTACTTGCTCAAGCGTGAATACTGGAAGGACGTGCACTGATCACGCAGTAGTTTCTGGTT‑GTTGAACGCGCCCGGGGTGGCCTAGCAGTATTGCCAGGCCACCCCGGGCGCGTTTTCATTTAAAGTTGc < 5:279470/149‑1 (MQ=255) gCTTTCTTCTTCGTATTCGCCTACTTGCTCAAGCGTGAATACTGGAAGGACCTGCACTGATCACGCAGTAGTTTCTGGTT‑GTTGAACGCGCCCGGGGTGGCCTAGCAGTATTGCCAGGCCACCCCGGGCGCGTTTTCATTTAAAGtt < 5:203350/147‑1 (MQ=255) tttCTTCTTCGTATTCGCCTACTTGCTCAAGCGTGAATACTGGAGGGACGTGCACTGATCACGCAGTAGTTTCTGGTT‑GTTGAACGCGCCCGGGGTGGCCTAGCAGTATTGCCAGGCCACCCCGGGCGCGTTTTCATTTAAAGtt < 1:273596/145‑1 (MQ=255) tttCTTCTTCGTATTCGCCTACTTGCTCAAGCGTGAATACTGGAGGGACGTGCACTGATCACGCAGTAGTTTCTGGTT‑GTTGAACGCGCCCGGGGTGGCCTAGCAGTATTGCCAGGCCACCCCGGGCGCGTTTTCATTTAAAGtt > 2:273596/1‑145 (MQ=255) gCCTACTTGCTCAAGCGTGAATACTGGAAGGACGTGCACTGATCACGCAGTAGTTTCTGGTT‑GTTGAACGCGCCCGGGGTGGCCTAGCAGTATTGCCAGGCCACCCCGGGCGCGTTTTCATTTAAAGtt > 4:194048/1‑129 (MQ=255) gCCTACTTGCTCAAGCGTGAATACTGGAAGGACGTGCACTGATCACGCAGTAGTTTCTGGTT‑GTTGAACGCGCCCGGGGTGGCCTAGCAGTATTGCCAGGCCACCCCGGGCGCGTTTTCATTTAAAGtt < 3:194048/129‑1 (MQ=255) gCCTACTTGCTCAAGCGTGAATACTGGAAGGACGTGCACTGATCACGCAGTAGTTTCTGGTT‑GTTGAACGCGCCCGGGGTGGCCTAGCAGTATTGCCAGGCCACCCCGGGCGCGTTTTCATTTAAAGTTGCACAAGCATCCGTGCgag > 4:330518/1‑148 (MQ=255) gCCTACTTGCTCAAGCGTGAATACTGGAAGGACGTGCACTGATCACGCAGTAGTTTCTGGTT‑GTTGAACGCGCCCGGGGTGGCCTAGCAGTATTGCCAGGCCACCCCGGGCGCGTTTTCATTTAAAGTTGCACAAGCATCCGTGCgag < 6:305845/148‑1 (MQ=255) ccTACTTGCTCAAGCGTGAATACTGGAAGGACGTGCACTGATCACGCAGTAGTTTCTGGTT‑GTTGAACGCGCCCGGGGTGGCCTAGCAGTATTGCCAGGCCACCCCGGGCGCGTTTTCATTTAAAGTTGCACAAGCATCCGTGCgag > 3:279086/1‑147 (MQ=255) ttGCTCAAGCGTGAATACTGGAAGGACGTGCACTGATCACGCAGTAGTTTCTGGTT‑GTTGAACGCGCCCGGGGTGGCCTAGCAGTATTGCCAGGCCACCCCGGGCGCGTTTTCATTTAAAGTTGCACAAGCATCCGTGCGAGGAGCCg > 6:174774/1‑148 (MQ=255) aaGCGTGAATACTGGAAGGACGTGCACTGATCACGCAGTAGTTTCTGGTT‑GTTGAACGCGCCCGGGGTGGCCTAGCAGTATTGCCAGGCCACCCCGGGCGCGTTTTCATTTAAAGTTGCACAAGCATCCGTGCGAGGAGCCGCTACa < 5:24633/147‑1 (MQ=255) gCGTGAATACTGGAAGGACGTGCACTGATCACGCAGTAGTTTCTGGTT‑GTTGAACGCGCCCGGGGTGGCCTAGCAGTATTGCCAGGCCACCCCGGGCGCGTTTTCATTTAAAGTTGCACAAGCATCCGTGCGAGGAGCCGCTACATggg < 1:309690/149‑1 (MQ=255) gTGAATACTGGAAGGACGTGCACTGATCACGCAGTAGTTTCTGGTT‑GTTGAACGCGCCCGGGGTGGCCTAGCAGTATTGCCAGGCCACCCCGGGCGCGTTTTCATTTAAAGTTGCACAAGCATCCGTGCGAGGAGCCGCTACATGGgcg > 6:111027/1‑149 (MQ=255) gAATACTGGAAGGACGTGCACTGATCACGCAGTAGTTTCTGGTT‑GTTGAACGCGCCCGGGGTGGCCTAGCAGTATTGCCAGGCCACCCCGGGCGCGTTTTCATTTAAAGTTGCACAAGCATCCGTGCGAGGAGCCGCTACATGGgcgc > 3:304555/1‑148 (MQ=255) gAATACTGGAAGGACGTGCACTGATCACGCAGTAGTTTCTGGTT‑GTTGAACGCGCCCGGGGTGGCCTAGCAGTATTGCCAGGCCACCCCGGGCGCGTTTTCATTTAAAGTTGCACAAGCATCCGTGCGAGGAGCCGCTACATGGgcgc > 3:121716/1‑148 (MQ=255) cTGGAAGGACGTGCACTGATCACGCAGTAGTTTCTGGTT‑GTTGAACGCGCCCGGGGTGGCCTAGCAGTATTGCCAGGCCACCCCGGGCGCGTTTTCATTTAAAGTTGCACAAGCATCCGTGCGAGGAGCCGCTACATGGGCGcaaccaa > 4:195251/1‑149 (MQ=255) tGGAAGGACGTGCACTGATCACGCAGTAGTTTCTGGTT‑GTTGAACGCGCCCGGGGTGGCCTAGCAGTATTGCCAGGCCACCCCGGgc < 8:46403/87‑1 (MQ=255) tGGAAGGACGTGCACTGATCACGCAGTAGTTTCTGGTT‑GTTGAACGCGCCCGGGGTGGCCTAGCAGTATTGCCAGGCCACCCCGGgc < 4:123317/87‑1 (MQ=255) tGGAAGGACGTGCACTGATCACGCAGTAGTTTCTGGTT‑GTTGAACGCGCCCGGGGTGGCCTAGCAGTATTGCCAGGCCACCCCGGgc > 7:46403/1‑87 (MQ=255) tGGAAGGACGTGCACTGATCACGCAGTAGTTTCTGGTT‑GTTGAACGCGCCCGGGGTGGCCTAGCAGTATTGCCAGGCCACCCCGGgc > 3:123317/1‑87 (MQ=255) gAAGGACGTGCACTGATCACGCAGTAGTTTCTGGTT‑GTTGAACGCGCCCGGGGTGGCCTAGCAGTATTGCCAGGCCACCCCGGGCGCGTTTTCATTTAAAGTTGcaca < 4:123053/108‑1 (MQ=255) gAAGGACGTGCACTGATCACGCAGTAGTTTCTGGTT‑GTTGAACGCGCCCGGGGTGGCCTAGCAGTATTGCCAGGCCACCCCGGGCGCGTTTTCATTTAAAGTTGcaca > 3:123053/1‑108 (MQ=255) gAAGGACGTGCACTGATCACGCAGTAGTTTCTGGTT‑GTTGAACGCGCCCGGGGTGGCCTAGCAGTATTGCCAGGCCACCCCGGGCGCGTTTTCATTTAAAGTTGCACAAGCATCCGTGCGAGGAGCCGCTACATGGGCGCAACCAACa < 5:174774/148‑1 (MQ=255) gAAGGACGTGCACTGATCACGCAGTAGTTTCTGGTT‑GTTGAACGCGCCCGGGGTGGCCTAGCAGTATTGCCAGGCCACCCCGGGCGCGTTTTCATTTAAAGTTGCACAAGCATCCGTGCGAGGAGCCGCTACATGGGCGCAACCAACAg > 8:66307/1‑149 (MQ=255) gAAGGACGTGCACTGATCACGCAGTAGTTTCTGGTT‑GTTGAACGCGCCCGGGGTGGCCTAGCAGTATTGCCAGGCCACCCCGGGCGCGTTTTCATTTAAAGTTGCACAAGCATCCGTGCGAGGAGCCGCTACATGGGCGCAACCAACAg < 2:57241/149‑1 (MQ=255) ggACGTGCACTGATCACGCAGTAGTTTCTGGTT‑GTTGAACGCGCCCGGGGTGGCCTAGCAGTATTGCCAGGCCACCCCGGGCGCGTTTTAATTTAAAGTTGCACAATCATACGTGCGAGGAGCCGCTACATTGGCGCAACCAACactt > 2:279343/1‑145 (MQ=39) gACGTGCACTGATCACGCAGTAGTTTCGGGGT‑GTTGAACGCGCCCGGGGTGGCCTAGCAGTATTGCCAGGCCACCCCGGGCGCGTTTTCATTTAAAGTTGca < 7:49008/102‑1 (MQ=255) gCACTGATCACGCAGTAGTTTCTGGTTGGTTGAACGCGCCCGGGGTGGCCTAGCAGTATTGCCAGGCCACCCCGGGCGCGTTTTCATTTAAAGTTGCACAAGCATCCGTGCGAGGAGCCGCTACATGGGCGcaaccaac > 1:20250/1‑139 (MQ=255) gCACTGATCACGCAGTAGTTTCTGGTT‑GTTGAACGCGCCCGGGGTGGCCTAGCAGTATTGCCAGGCCACCCCGGGCGCGTTTTCATTTAAAGTTGCACAAGCATCCGTGCGAGGAGCCGCTACATGGGCGcaaccaac < 2:20250/138‑1 (MQ=255) aTCACGCAGTAGTTTCTGGTT‑GTTGAACGCGCCCGGGGTGGCCTAGCAGTATTGCCAGGCCACCCCGGGCGCGTTTTCATTTAAAGTTGCACAAGCATCCGTGCGAGGAGCCGCTACATGGGCGCAACCAACAGGTTAGCCTGCTATTc < 7:78048/149‑1 (MQ=255) aTCACGCAGTAGTTTCTGGTT‑GTTGAACGCGCCCGGGGTGGCCTAGCAGTATTGCCAGCCCACCCCGGGCGCGTTTTCATTTAAACTTGCACAAGCATCCGTGCGAGCACCCGCTACATGGGCGCAACCAACAGGATAGCCTGCTATTc > 2:99923/1‑149 (MQ=255) tCACGCAGTAGTTTCTGGTT‑GTTGAACGCGCCCGGGGTGGCCTAGCAGTATTGCCAGGCCACCCCGGGCGCGTTTTCATTTAAAGTTGCACAAGCATCCGTGCGAGGAGCCGCTACATGGGCGCAACCAACAGGTTAGCCTGCTATTc < 4:121716/148‑1 (MQ=255) gCAGTAGTTTCTGGTT‑GTTGAACGCGCCCGGGGTGGCCTAGCAGTATTGCCAGGCCACCCCGGGCGCGTTTTCATTTAAAGTTGCACAAGCATCCGTGCGAGGAGCCGCTACATGGGCGCAACCAACAGGTTAGCCt < 1:309861/137‑1 (MQ=255) gCAGTAGTTTCTGGTT‑GTTGAACGCGCCCGGGGTGGCCTAGCAGTATTGCCAGGCCACCCCGGGCGCGTTTTCATTTAAAGTTGCACAAGCATCCGTGCGAGGAGCCGCTACATGGGCGCAACCAACAGGTTAGCCt > 2:309861/1‑137 (MQ=255) gCAATAGTTTCTGGTT‑GTTGAACGCGCCCGGGGTGGCCTAGCAGTATTGCCAGGCCACCCCGGGCGCGTTTTCATTTAAAGTTGCACAAGCATCCGTGCGAGGAGCCGCTACATGGGCGcaac > 3:197291/1‑123 (MQ=255) gCAATAGTTTCTGGTT‑GTTGAACGCGCCCGGGGTGGCCTAGCAGTATTGCCAGGCCACCCCGGGCGCGTTTTCATTTAAAGTTGCACAAGCATCCGTGCGAGGAGCCGCTACATGGGCGcaac < 4:197291/123‑1 (MQ=255) tagtTTCTGGTT‑GTTGAACGCGCCCGGGGTGGCCTAGCAGTATTGCCAGGCCACCCCGGGCGCGTTTTCATTTAAAGTTGCACAAGCATCCGTGCGAGGAGCCGCTACATGGGCGCAACCAACAGGTTAGCCTGCTATTCCGATCCCGc < 4:327352/149‑1 (MQ=255) tttCTGGTT‑GTTGAACGCGCCCGGGGTGGCCTAGCAGTATTGCCAGGc > 3:82178/1‑48 (MQ=255) tttCTGGTT‑GTTGAACGCGCCCGGGGTGGCCTAGCAGTATTGCCAGGc < 4:82178/48‑1 (MQ=255) tCTGGTT‑GTTGAACGCGCCCGGGGTGGCCTAGCAGTATTGCCAGGCCACCCCGGGCGCGTTTTCATTTAAAGTTGCACAAGCATCCGTGCGAGGAGCCGCTACATGGGCGCAACCAACAGGTTAGCCTGCTATTCCGATCCCGCTGAt < 4:279086/148‑1 (MQ=255) tCTGGTT‑GTTGAACGCGCCCGGGGTGGCCTAGCAGTATTGCCAGGCCACCCCGGGCGCGTTTTCATTTAAAGTTGCACAAGCATCCGTGCGAGGAGCCGCTACATGGGCGCAACCAACAGGTTAGCCTGCTATTCCGATCCCGCTGAt < 5:111027/148‑1 (MQ=255) tGGTT‑GTTGAACGCGCCCGGGGTGGCCTAGCAGTATTGCCAGGCCACCCCGGGCGCGTTTTCATTTAAAGTTGCACAAGCATCCGTGCGAGGAGCCGCTACAt > 6:309816/1‑103 (MQ=255) tGGTT‑GTTGAACGCGCCCGGGGTGGCCTAGCAGTATTGCCAGGCCACCCCGGGCGCGTTTTCATTTAAAGTTGCACAAGCATCCGTGCGAGGAGCCGCTACAt < 5:309816/103‑1 (MQ=255) tGGTT‑GTTGAACGCGCCCGGGGTGGCCTAGCAGTATTGCCAGGCCACCCCGGGCGCGTTTTCATTTAAAGTTGCACAAGCATCCGTGCGAGGAGCCGCTACATGGGCGCAACCAACAGGTTAGCCTGCTATTc < 1:146202/133‑1 (MQ=255) gtt‑gttGAACGCGCCCGGGGTGGCCTAGCAGTATTGCCAGGCCACCCCGGGCGCGTTTTCATTTAAAGTTGCACAAGCATCCGTGCGAGGAGCCGCTACATGGGCGCAACCAACAGGTTAGCCTGCTATTCCGATCCCGCTGATCACTa > 3:65814/1‑149 (MQ=255) gttgAACGCGCCCGGGGTGGCCTAGCAGTATTGCCAGGCCACCCCGGGCGCGTTTTCATTTAAAGTTGCACAAGCATCCGTGCGAGGAGCCGCTACATGGGCGCAACCAACAGGTTAGCCTGCTATTCCGATCCCGCTGATCACTAtt < 6:252379/148‑1 (MQ=255) ttgAACGCGCCCGGGGTGGCCTAGCAGTATTGCCAGGCCACCCCGGGCGCGTTTTCATTTAAAGTTGCACAAGCATCCGTGCGAGGAGCCGCTACATGGgc < 5:292102/101‑1 (MQ=255) ttgAACGCGCCCGGGGTGGCCTAGCAGTATTGCCAGGCCACCCCGGGCGCGTTTTCATTTAAAGTTGCACAAGCATCCGTGCGAGGAGCCGCTACATGGgc > 6:292102/1‑101 (MQ=255) gAACGCGCCCGGGGTGGCCTAGCAGTATTGCCAGGCCACCCCGGGCGCGTTTTCATTTAAAGTTGCACAAGCATCCGTGCGAGGAGCCGCTACATGGGCGCAACCAACAGGTTAGCCTGCTATTCCGATCCCGCTGATCACTATtctc < 4:304555/148‑1 (MQ=255) gAACGCGCCCGGGGTGGCCTAGCAGTATTGCCAGGCCACCCCGGGCGCGTTTTCATTTAAAGTTGCACAAGCATCCGTGCGAGGAGCCGCTACATGGGCGCAACCAACAGGTTAGCCTGCTATTCCGATCCCGCTGATCACTATTCTCa > 2:28238/1‑149 (MQ=255) aaCGCGCCCGGGGTGGCCTAGCAGTATTGCCAGGCCACCCCGGGCGCGTTTTGATTTTAAGTTTGCCAAGCATGCGTGCGAGGAGCCGCTTCAAGGGCGCAACCAACAGGTTAGCCGGCTATTACGATCCCGCTGa > 4:326400/1‑136 (MQ=37) aaCGCGCCCGGGGTGGCCTAGCAGTATTGCCAGGCCACCCCGGGCGCGTTTTCATTTAAAGTTGCACAAGCATCCGTGCGAGGAGCCGCTACATGGGCGCAACCAACAGGTTAGCCTGCTATTCCGATCCCGCTGa < 3:326400/136‑1 (MQ=255) aaCGCGCCCGGGGTGGCCTAGCAGTATTGCCAGGCCACCCCGGGCGCGTTTTCATTTAAAGTTGCACAAGCATCCGTGCGAGGAGCCGCTACATGGGCGCAACCAACAGGTTAGCCTGCTATTCCGATCCCGCTGATCACTATTCTCAt < 3:330518/149‑1 (MQ=255) aCGCGCCCGGGGTGGCCTAGCAGTATTGCCAGGCCACCCCGGGCGCGTTTTCATTTAAAGTTGCACAAGCATCCGTGCGAGGAGCCGCTACATGGGCGCAACCAACAGGTTAGCCTGCTATTCCGATCCCGCTGATCACTATTCTCATc < 7:137856/149‑1 (MQ=255) ccGGGGTGGCCTAGCAGTATTGCCAGGCCACCCCGGGCGCGTTTTCATTTAAAGTTGCACAAGCATCCGTGCGAGGAGCCGCTACATGGGCGCAACCAACAGGTTAGCCTg < 2:283160/111‑1 (MQ=255) ccGGGGTGGCCTAGCAGTATTGCCAGGCCACCCCGGGCGCGTTTTCATTTAAAGTTGCACAAGCATCCGTGCGAGGAGCCGCTACATGGGCGCAACCAACAGGTTAGCCTg > 1:283160/1‑111 (MQ=255) ccGGGGTGGCCTAGCAGTATTGCCAGGCCACCCCGGGCGCGTTTTCATTTAAAGTTGCACAAGCATCCGTGCGAGGAGCCGCTACATGGGCGCAACCAACAGGTTAGCCTGCTATTCCGATCCCGCTGATCACTATTCTCATCGGGTTc < 3:195251/149‑1 (MQ=255) tGGCCTGGCAATACTGCTAGGCCACCCCGGGCGCGTTTTCATTTAAAGTTGCACAAGCATCCGTGCGAGGAGCCGCTACATGGGCGCAACCAACAGGTTAGCCTGCTATTCCGAGCCCGCTGATCCCTAGTCTCATCGGTTTCGCCTgg > 8:127598/1‑149 (MQ=38) tGGCCTAGCAGTATTGCCAGGCCACCCCGGGCGCGTTTTCATTTAAAGTTGCACAAGCATCCGTGCGAGGAGCCGCTACATGGGCGCAACCAACAGGTTAGCCTGCTATTCCGATCCCCCTGATCACTATTCTCATCGGGTTCGCCTgg < 1:28238/149‑1 (MQ=255) gCCTGGCAATACTGCTAGGCCACCCCGGGCGCGTTTTCATTTAAAGTTGCACAAGCATCCGTGCGAGGAGCCGCTACATGGGCGCAACCAACAGGTTAGCCTGCTATTCCGATCCCGCTGATCACTATTCTCATCGGGTTCGCCTGGtt > 8:102254/1‑149 (MQ=255) ccTAGCAGTATTGCCAGGCCACCCCGGGCGCGTTTTCATTTAAAGTTGCACAAGCATCCGTGCGAGGAGCCGCTACATGGGCGCAACCAACAGGTTAGCCTGCTATTCCGATCCCGCTGATCACTATTCTCATCGGGTTCGCCTGGTTc > 2:295045/1‑149 (MQ=255) cTAGCAGTATTGCCAGGCCACCCCGGGCGCGTTTTCATTTAAAGTTGCACAAGCATCCGTGCGAGGAGCCGCTACATGGGCGCAACCAACAGGTTAGCCTGCTAtt < 1:170668/106‑1 (MQ=255) gCAATACTGCTAGGCCACCCCGGGCGCGTTTTCATTTAAAGTTGCACAAGCATCCGTGCgagg > 7:16611/1‑63 (MQ=25) gCAATACTGCTAGGCCACCCCGGGCGCGTTTTCATTTAAAGTTGCACAAGCATCCGTGCgagg < 8:16611/63‑1 (MQ=25) gTATTGCCAGGCCACCCCGGGCGCGTTTTCATTTAAAGTTGCACAAGCATCCGTGCAAGGAGCCGCTACATGGGCGCAACCAACAGGTTAGGCTGCTATTACGATCCCGCTGATCCCTATTCTGATAGGGTTCGCCTGGTTCTGGCCg > 1:94251/1‑148 (MQ=255) ttGCCAGGCCACCCCGGGCGCGTTTTCATTTAAAGTTGCACAAGCATCCGTGCGAGGAGCCGCTACATGGGCGCAACCAACAGGTTAGCCTGCTATTCCGATCCCGCTGATCACTATTCTCATCGGGTTc > 3:110766/1‑130 (MQ=255) ttGCCAGGCCACCCCGGGCGCGTTTTCATTTAAAGTTGCACAAGCATCCGTGCGAGGAGCCGCTACATGGGCGCAACCAACAGGTTAGCCTGCTATTCCGATCCCGCTGATCACTATTCTCATCGGGTTc < 4:110766/130‑1 (MQ=255) | AGCGCATCGGCACCTATGTGTTGCTGTATCTGGCTTTCTTCTTCGTATTCGCCTACTTGCTCAAGCGTGAATACTGGAAGGACGTGCACTGATCACGCAGTAGTTTCTGGTT‑GTTGAACGCGCCCGGGGTGGCCTAGCAGTATTGCCAGGCCACCCCGGGCGCGTTTTCATTTAAAGTTGCACAAGCATCCGTGCGAGGAGCCGCTACATGGGCGCAACCAACAGGTTAGCCTGCTATTCCGATCCCGCTGATCACTATTCTCATCGGGTTCGCCTGGTTCTGGCCG > NC_002947/1506788‑1507074 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |