Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 1,634,129 | C→G | 6.9% | D20E (GAC→GAG) | rnc → | ribonuclease 3 |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 1,634,129 | 0 | C | G | 6.9% | 181.9 / 4.2 | 58 | D20E (GAC→GAG) | rnc | ribonuclease 3 |
Reads supporting (aligned to +/- strand): ref base C (29/25); new base G (2/2); total (31/27) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.49e-01 |
TTCGCCACACATCAATCGGCGGACCACAGCCAAACAGTCTTTCAGGATGTTGATTTGAACAACGCGTTGAACAACGATCGGGTGGCCGCATGAGTGCTTCCCTTGCCGGTCTGGAGCGAAAGCTCGGTTACACCTTCAAGAACCAGGACCAGATGCTCCTGGCACTGACCCATCGCAGTTACGCCGGGCGCAACAATGAGCGCCTGGAGTTCCTCGGTGACGCCATTCTCAACTTCGTTGCCGGCGAAGCGCTGTTCGAGCGTTTTCCGCAGGCCCGCGAAGGCCAGTTGTCGC > NC_002947/1633981‑1634274 | ttCGCCACACATCAATCGGCGGACCACAGCCAAACAGTCTTTCAGGATGTTGATTTTAACAACGCGTTGAACAACGATCGGGTGGCCGCATGAGTGCTTCCCTTGCCGGTCTGGAGCGAAATCTCGGTTACACCTTCAAGAACCAGGAc < 1:17540/149‑1 (MQ=255) acaTCAATCGGCGGACCACAGCCAAACAGTCTTTCAGGATGTTGATTTGAACAACGCGTTGAACAACGATCGGGTGGCCGCATGAGTGCTTCCCTTGCCGGTCTGGAGCGAAAGCTCGGTTACACCTTCAAGAACCAGGACCAGATGCt > 3:70878/1‑149 (MQ=255) aTCAATCGGCGGACCACAGCCAAACAGTCTTTCAGGATGTTGATTTGAACAACGCGTTGAACAACGATCGGGTGGCCGCATGAGTGCTTCCCTTGCCGGTCTGGAGCGAAAGCTCGGTTACACCTTCAAGAACCAGGACCAGATGCTcc > 4:47337/1‑149 (MQ=255) tCAATCGGCGGACCACAGCCAAACAGTCTTTCAGGATGTTGATTTGAACAACGCGTTGAACAACGATCGGGTGGCCGCATGAGTGCTTCCCTTGCCGGTCTGGAGCGAAAGCTCGGTTACACCTTCAAGAACCAGGACCAGATGCTCCt < 4:159430/149‑1 (MQ=255) tCAATCGGCGGACCACAGCCAAACAGTCTTTCAGGATGTTGATTTGAACAACGCGTTGAACAACGATCGGGTGGCCGCATGAGTGCTTCCCTTGCCGGTCTGGAGCGAAAGCTCGGTTACACCTTCAAGAACCAGGACCAGATGCTCCt < 3:47337/149‑1 (MQ=255) aaTCGGCGGACCACAGCCAAACAGTCTTTCAGGATGTTGATTTGAACAACGCGTTGAACAACGATCGGGTGGCCGCATGAGTGCTTCCCTTGCCGGTCTGGAGCGAAAGCTCGGTTACACCTTCAAGAACCAGGACCAGATGCTCCTg < 2:218374/148‑1 (MQ=255) aTCGGCGGACCACAGCCAAACAGTCTTTCAGGATGTTGATTTGAACAACGCGTTGAACAACGATCGGGTGGCCGCATGAGTGCTTCCCTTGCCGGTCTGGAGCGAAAGCTCGGTTACACCTTCAAGAACCAGGACCAGATg < 1:186304/141‑1 (MQ=255) aTCGGCGGACCACAGCCAAACAGTCTTTCAGGATGTTGATTTGAACAACGCGTTGAACAACGATCGGGTGGCCGCATGAGTGCTTCCCTTGCCGGTCTGGAGCGAAAGCTCGGTTACACCTTCAAGAACCAGGACCAGATg > 2:186304/1‑141 (MQ=255) acaGCCAAACAGTCTTTCAGGATGTTGATTTGAACAACGCGTTGAACAACGATCGGGTGGCCGCATGAGTGCTTCCCTTGCCGGTCTGGAGCGAAAGCTCGGTTAGACCTTCAAGAACCAGGAGCATCTGGTCCTggttc > 8:130288/1‑137 (MQ=255) acaGCCAAACAGTCTTTCAGGATGTTGATTTGAACAACGCGTTGAACAACGATCGGGTGGCCGCATGAGTGCTTCCCTTGCCGGTCTGGAGCGAAAGCTCGGTTAGACCTTCAAGAACCAGGAGCATCTGGTCCTggttc < 7:130288/140‑4 (MQ=255) aCAGTCTTTCAGGATGTTGATTTGAACAACGCGTTGAACAACGATCGGGTGGCCGCATGAGTGCTTCCCTTGCCGGTCTGGAGCGAAAGCTCGGTTACACCTTCAAGAACCAGGACCAGATGCTCCTgg < 6:247894/129‑1 (MQ=255) aCAGTCTTTCAGGATGTTGATTTGAACAACGCGTTGAACAACGATCGGGTGGCCGCATGAGTGCTTCCCTTGCCGGTCTGGAGCGAAAGCTCGGTTACACCTTCAAGAACCAGGACCAGATGCTCCTgg > 5:247894/1‑129 (MQ=255) aCAGTCTTTCAGGATGTTGATTTGAACAACGCGTTGAACAACGATCGGGTGGCCGCATGAGTGCTTCCCTTGCCGGTCTGGAGCGAAAGCTCGGTTACACCTTCAAGAACCAGGACCAGATGCTCCTGGCACTGACCCATCGCAGTTAc > 2:274579/1‑149 (MQ=255) tCTTTCAGGATGTTGATTTGAACAACGCGTTGAACAACGATCGGGTGGCCGCATGAGTGCTTCCCTTGCCGGTCTGGAGCGAAAGCTCGGTTACACCTTCAAGAACCAGGACCAGATGCTCCTGGCACTGACCCATCGCAGTTACGCCg < 4:108162/149‑1 (MQ=255) tttCAGGATGTTGATTTGAACAACGCGTTGAACAACGATCGGGTGGCCGCATGAGTGCTTCCCTTGCCGGTCTGGAGCGAAAGCTCGGTTACACCTTCAAGAACCAGGACCAGATGCTCCTGGCACTGACCCATCGCAGTTACGCCggg > 4:181290/1‑149 (MQ=255) gATGTTGATTTGATCAACGCGTTGAACAACGATCGGGTGGCCGCATGAGTGCTTCCCTTGCCGGTCTGGAGCGAAAGCTCGGTTACACCTTCAAGAACCAGGACCAGATGCTCCTGGCACTGAccc > 8:245609/1‑126 (MQ=255) gATGTTGATTTGATCAACGCGTTGAACAACGATCGGGTGGCCGCATGAGTGCTTCCCTTGCCGGTCTGGAGCGAAAGCTCGGTTACACCTTCAAGAACCAGGACCAGATGCTCCTGGCACTGAccc < 7:245609/126‑1 (MQ=255) tGTTGATTTGAACAACGCGTTGAACAACGATCGGGTGGCCGCATGAGTGCTTCCCTTGCCGGTCTGGAGCGAAAGCTCGGTTACACCTTCAAGAACCAGGACCAGATGCTCCTGGCACTGACCCATCGCAGTTACGCCGGGCGcaacaa > 2:159388/1‑149 (MQ=255) gTTGATTTGAACAACGCGTTGAACAACGATCGGGTGGCCGCATGAGTGCTTCCCTTGCCGGTCTGGAGCGAAAGCTCGGTTACACCTTCAAGAACCAGGACCAGATGCTCCTGGCACTGACCCATCGCa < 2:25231/129‑1 (MQ=255) gTTGATTTGAACAACGCGTTGAACAACGATCGGGTGGCCGCATGAGTGCTTCCCTTGCCGGTCTGGAGCGAAAGCTCGGTTACACCTTCAAGAACCAGGACCAGATGCTCCTGGCACTGACCCATCGCa > 1:25231/1‑129 (MQ=255) gTTGATTTGAACAACGCGTTGAACAACGATCGGGTGGCCGCATGAGTGCTTCCCTTGCCGGTCTGGAGCGAAAGCTCGGTTACACCTTCAAGAACCAGGACCAGATGCTCCTGGCACTGACCCATCGCAGTTACGCCGGGCGCAACAAt > 4:60410/1‑149 (MQ=255) tGATTTGAACAACGCGTTGAACAACGATCGGGTGGCCGCATGAGTGCTTCCCTTGCCGGTCTGGAGCGAAAGCTCGGTTACACCTTCAAGAACCAGGACCAGATGCTCCTGGCACTGACCCATCGCAGTTACGCCGGGCGCAACAAt > 5:313271/1‑147 (MQ=255) gAACAACGCGTTGAACAACGATCGGGTGGCCGCATGAGTGCTTCCCTTGCCGGTCTGGAGCGAAAGCTCGGTTACACCTTCAAGAACCAGGACCAGATGCTCCTGGCACTGACCCATCGCAGTTACGCCGGGCGCAACAATGAGCGCCt > 6:112339/1‑149 (MQ=255) aacaacGCGTTGAACAACGATCGGGTGGCCGCATGAGTGCTTCCCTTGCCGGTCTGGAGCGAAAGCTCGGTTACACCTTCAAGAACCAGGACCAGATGCTCCTGGCACTGACCCATCGCAGTTACGCCGGGCGCAACAATGAGCGCCTg > 4:319837/1‑149 (MQ=255) caacGCGTTGAACAACGATCGGGTGGCCGCATGAGTGCTTCCCTTGCCGGTCTGGAGCGAAAGCTCGGTTACACCTTCAAGAACCAGGACCAGATGCTCCTGGCACTGACCCATCGCAGTTACGCCGGGCGCAACAATGAGCGCCTggt < 6:191751/149‑2 (MQ=255) aacGCGTTGAACAACGATCGGGTGGCCGCATGAGTGCTTCCCTTGCCGGTCTGGAGCGAAAGCTCGGTTACACCTTCAAGAACCAGGACCAGATGCTCCTGGCACTGACCCATCGCAGTTACGCCGGGCGCAACAATGAGCGCCTGGAg < 3:181290/149‑1 (MQ=255) gcgTTGAACAACGATCGGGTGGCCGCATGAGTGCTTCCCTTGCCGGTCTGGAGCGAAAGCTCGGTTACACCTTCAAGAACCAGGACCAGATGCTCCTGGCACTGACCCATCGCAGTTACGCCGGGCGCAACAATGAGCGCCTGGAGTTc > 5:28614/1‑149 (MQ=255) gAACAACGATCGGGTGGCCGCATGAGTGCTTCCCTTGCCGGTCTGGAGCGAAAGCTCGGTTACACCTTCAAGAACCAGGACCAGATGCTCCTGGCACTGACCCATCGCAGTTACGCCGGGCGCAACAATGAGCGCCTGGAGTTCCTCg < 6:313271/148‑1 (MQ=255) aacaacGATCGGGTGGCCGCATGAGTGCTTCCCTTGCCGGTCTGGAGCGAAAGCTCGGTTACACCTTCAAGAACCAGGACCAGATGCTCCTGGCACTGACCCATCGCAGTTACGCCGGGCGCAACAATGAGCGCCTGGAGTTcc > 2:260403/1‑144 (MQ=255) aacaacGATCGGGTGGCCGCATGAGTGCTTCCCTTGCCGGTCTGGAGCGAAAGCTCGGTTACACCTTCAAGAACCAGGACCAGATGCTCCTGGCACTGACCCATCGCAGTTACGCCGGGCGCAACAATGAGCGCCTGGAGTTcc < 1:260403/144‑1 (MQ=255) aacaacGATCGGGTGGCCGCATGAGTGCTTCCCTTGCCGGTCTGGAGCGAAAGCTCGGTTACACCTTCAAGAACCAGGACCAGATGCTCCTGGCACTGACCCATCGCAGTTACGCCGGGCGCAACAATGAGCGCCTGGAGTTCCTCGGt < 3:84351/149‑1 (MQ=255) gggTGGCCGCATGAGTGCTTCCCTTGCCGGTCTGGAGCGAAAGCTCGGTTACACCTTCAAGAACCAGGACCAGATGCTCCTGGCACTGACCCATCGCAGTTACGCCGGGCGCAACAATGAGCGCCTGGAGTTCCTCGGTGACGCCAtt < 3:319837/148‑1 (MQ=255) ggTGGCCGCATGAGTGCTTCCCTTGCCGGTCTGGAGCGAAAGCTCGGTTACACCTTCAAGAACCAGGACCAGATGCTCCTGGCACTGACCCATCGCAGTTACGCCGGGCGCAACAATGAGCTACTGGAGTTCCTCGGTTACGCCAttat > 8:177892/1‑147 (MQ=255) gCCGCATGAGTGCTTCCCTTGCCGGTCTGGAGCGAAAGCTCGGTTACACCTTCAAGAACCAGGACCAGATGCTCCTGGCACTGACCCATCGCAGTTACGCCGGGCGCAACAATGAGCGCCTGGAGTTCCTCGGTGACGCCATTCTCaa < 1:159388/148‑1 (MQ=255) gCATGAGTGCTTCCCTTGCCGGTCTGGAGCGAAAGCTCGGTTACACCTTCAAGAACCAGGACCAGATGCTCCTGGCACTGACCCATCGCAGTTACGCCGGGCGCAACAATGAGCGCCTGGAGTTCCTCGGTGACGCCATTCTCAACTTc > 5:79623/1‑149 (MQ=255) gCATGAGTGCTTCCCTTGCCGGTCTGGAGCGAAAGCTCGGTTACACCTTCAAGAACCAGGACCAGATGCTCCTGGCACTGACCCATCGCAGTTACGCCGGGCGCAACAATGAGCGCCTGGAGTTCCTCGGTGACGCCATTCTCAACTTc > 6:88382/1‑149 (MQ=255) gCATGAGTGCTTCCCTTGCCGGTCTGGAGCGAAAGCTCGGTTACACCTTCAAGAACCAGGACCAGATGCTCCTGGCACTGACCCATCGCAGTTACGCCGGGCGCAACAATGAGCGCCTGGAGTTCCTCGGTGACGCCATTCTCAACTTc > 2:119906/1‑149 (MQ=255) cATGAGTGCTTCCCTTGCCGGTCTGGAGCGAAAGCTCGGTTACACCTTCAAGAACCAGGACCAGATGCTCCTGGCACTGACCCATCGCAGTTACGCCGGGCGCAACAATGAGCGCCTGGAGTTCCTCGGTGACGCCATTCTCAACTTCg > 1:63383/1‑149 (MQ=255) aTGAGTGCTTCCCTTGCCGGTCTGGAGCGAAAGCTCGGTTACACCTTCAAGAACCAGGACCAGATGCTCCTGGCACTGACCCATCGCAGTTACGCCGGGCGCAACAATGAGCGCCTGGAGTTCCTCGGTGACGCCATTCTCAACTTCGt > 6:278729/1‑149 (MQ=255) aGTGCTTCCCTTGCCGGTCTGGAGCGAAAGCTCGGTTACACCTTCAAGAACCAGGACCAGATGCTCCTGGCACTGACCCATCGCAGTTACGCCGGGCGCAACAATGAGCGCCTGGAGTTCCTCGGTGACGCCATTCTCAACTTCGTTGc < 3:4574/149‑1 (MQ=255) gTGCTTCCCTTGCCGGTCTGGAGCGAAAGCTCGGTTACACCTTCAAGAACCAGGACCAGATGCTCCTGGCACTGACCCATCGCAGTTACGCCGGGCGCAACAATGAGCGCCTGGAGTTCCTCGGTGACGCCATTCTCAACTTCGTTGcc < 5:278729/149‑1 (MQ=255) gCTTCCCTTGCCGGTCTGGAGCGAAAGCTCGGTTACACCTTCAAGAACCAGGACCAGATGCTCCTGGCACTGACCCATCGCAGTTACGCCGGGCGCAACAATGAGCGCCTGGAGTTCCTCGGTGACGCCATTCTCAACTTCGTTGCCgg > 1:64433/1‑149 (MQ=255) cTTCCCTTGCCGGTCTGGAGCGAAAGCTCGGTTACACCTTCAAGAACCAGGACCAGATGCTCCTGGCACTGACCCATc < 1:200258/78‑1 (MQ=255) cTTCCCTTGCCGGTCTGGAGCGAAAGCTCGGTTACACCTTCAAGAACCAGGACCAGATGCTCCTGGCACTGACCCATc > 2:200258/1‑78 (MQ=255) gCCGGTCTGGAGCGAAAGCTCGGTTACACCTTCAAGAACCAGGACCAGATGCTCCTGGCACTGACCCATCGCAGTTACGCCGGGCGCAACAATGAGCGCCTGGAGTTCCTCg > 4:46781/1‑112 (MQ=255) gCCGGTCTGGAGCGAAAGCTCGGTTACACCTTCAAGAACCAGGACCAGATGCTCCTGGCACTGACCCATCGCAGTTACGCCGGGCGCAACAATGAGCGCCTGGAGTTCCTCg < 3:46781/112‑1 (MQ=255) ccGGTCTGGAGCGAAAGCTCGGTTACACCTTCAAGAACCAGGACCAGATGCTCCTGGCACTGACCCATCGCAGTTACGCCGGGCGCAACAATGAGCGCCTGGAGTTCCTCGGTGACGCCATTCTCAACTTCGTTGCCGGCGAAGCGCt < 2:63383/148‑1 (MQ=255) cGGTCTGGAGCGAAAGCTCGGTTACACCTTCAAGAACCAGGACCAGATGCTCCTGGCACTGACCCATCGCAGTTACGCCGGGCGCAACAATGAGCGCCTGGAGTTCCTCGGTGACGCCATTCTCAACTTCGTTGCCGGCGAAGCGCTGt < 1:274579/149‑1 (MQ=255) gAGCGAAAGCTCGGTTACACCTTCAAGAACCAGGACCAGATGCTCCTGGCACTGACCCATCGCAGTTACGCCGGGCGCAACAATGAGCGCCTGGAGTTCCTCGGTGACGCCATTCTCAACTTCGTTGCCGGCGAAGCGCTGTTCGAGc < 5:88382/148‑1 (MQ=255) cGAAAGCTCGGTTACACCTTCAAGAACCAGGACCAGATGCTCCTGGCACTGACCCATCGCAGTTACGCCGGGCGCAACAATGAGCGCCTGGAGTTCCTCGGTGACGCCATTCTCAACTTCGTTGCCGGCGAAGCGCTGTTCGAGCGttt > 5:228249/1‑149 (MQ=255) aaaGCTCGGTTACACCTTCAAGAACCAGGACCAGATGCTCCTGGCACTGACCCATCGCAGTTACGCCGGGCGCAACAATGAGCGCCTGGAGTTCCTCGGTGACGCCATTCTCAACTTCGTTGCCGGCGAAGCGCTGTTCGAGCGTTTTc > 3:314215/1‑149 (MQ=255) acacCTTCAAGAACCAGGACCAGATGCTCCTGGCACTGACCCATCGCAGTTACGCCGGGCGCAACAATGAGCGCCTGGAGTTCCTCGGTGACGCCATTCTCAACTTCGTTGCCGGCGAAGCGCTGTTCGAGCGTTTTCCGCAGGCCcg < 7:177892/148‑1 (MQ=255) ccTTCAAGAACCAGGACCAGATGCTCCTGGCACTGACCCATCGCAGTTACGCCGGGCGCAACAATGAGCGCCTGGAGTTCCTCGGTGACGCCATTCTCAACTTCGTTGCCGGCGAAGCGCTGTTCGAGCGTTTTCCGCAGGCCCGCGaa < 6:79623/149‑1 (MQ=255) gAACCAGGACCAGATGCTCCTGGCACTGACCCATCGCAGTTACGCCGGGCGCAACAATGAGCGCCTGGAGTTCCTCGGTGACGCCATTCTCAACTTCGTTGCCGGCGAAGCGCTGTTCGAGCGTTTTCCGCAgg > 7:182485/1‑134 (MQ=255) gAACCAGGACCAGATGCTCCTGGCACTGACCCATCGCAGTTACGCCGGGCGCAACAATGAGCGCCTGGAGTTCCTCGGTGACGCCATTCTCAACTTCGTTGCCGGCGAAGCGCTGTTCGAGCGTTTTCCGCAgg < 8:182485/134‑1 (MQ=255) gccAGGAGCATCTGGTCCTGGCACTGACCCATCGCAGTTACGCCGGGCGCAACAATGAGCGCCTGGAGTTCCTCGGTGACGCCATTCTCAACTTCGTTGCCGGCGAAGCGCTGTTc < 8:70661/115‑1 (MQ=255) gccAGGAGCATCTGGTCCTGGCACTGACCCATCGCAGTTACGCCGGGCGCAACAATGAGCGCCTGGAGTTCCTCGGTGACGCCATTCTCAACTTCGTTGCCGGCGAAGCGCTGTTc > 7:70661/2‑116 (MQ=255) cAGGACCAGATGCTCCTGGCACTGACCCATCGCAGTTACGCCGGGCGCAACAATGAGCGCCTGGAGTTCCTCGGTGACGCCATTCTCAACTTCGTTGCCGGCGAAGCGCTGTTCGAGCGTTTTCCGCAGGCCCGCGAAGGCCAGTTGTc > 4:263136/1‑149 (MQ=255) ggACCAGATGCTCCTGGCACTGACCCATCGCAGTTACGCCGGGCGCAACAATGAGCGCCTGGAGTTCCTCGGTGACGCCATTCTCAACTTCGTTGCCGGCGAAGCGCTGTTCGAGCGTTTTCCGCAGGCCCGCGAAGGCCAGTTGTcgc > 6:312514/1‑149 (MQ=255) | TTCGCCACACATCAATCGGCGGACCACAGCCAAACAGTCTTTCAGGATGTTGATTTGAACAACGCGTTGAACAACGATCGGGTGGCCGCATGAGTGCTTCCCTTGCCGGTCTGGAGCGAAAGCTCGGTTACACCTTCAAGAACCAGGACCAGATGCTCCTGGCACTGACCCATCGCAGTTACGCCGGGCGCAACAATGAGCGCCTGGAGTTCCTCGGTGACGCCATTCTCAACTTCGTTGCCGGCGAAGCGCTGTTCGAGCGTTTTCCGCAGGCCCGCGAAGGCCAGTTGTCGC > NC_002947/1633981‑1634274 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |