Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 1,695,029 | C→G | 7.3% | A332G (GCC→GGC) | wspC → | biofilm formation methyltransferase WspC |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 1,695,029 | 0 | C | G | 7.3% | 169.6 / 3.6 | 55 | A332G (GCC→GGC) | wspC | biofilm formation methyltransferase WspC |
Reads supporting (aligned to +/- strand): ref base C (26/25); new base G (2/2); total (28/27) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.26e-01 |
GCACCGGTTTATCCGCAGCCCAGTGTGCCGTTGCCTCGTTCGCGGCGTGTGCTGCCGGTGGCGGCCAGGCCAGCGCGAGCCCGCGAGCACAGCCACGAGGGGGCCAGCGAGTTGCTGG‑‑CCGGCATTGCCCGGCTGGCCAATGCCGGTGCCAGCGAG‑CAGGCCCGTAGCGAATGCCAACGCTACCTGAGCCAGTACCCGCCGTCGGCACAGGTGTACTACTGGCTGGGTTTGCTCAGTGATACCGAAGGCGATGCGCAGCAGGCGCTGAGCCACTATCG > NC_002947/1694893‑1695170 | gCACCGGTTTATCCGCAGCCCAGTGTGCCGTTGCCTCGTTCGCGGCGTGTGCTGCCGGTGGCGGCCAGGCCAGCGCGAGCCCGCGAGCACAGCCACGAGGGGGCCAGCGAGTTGCTGGCACCGGCATTGGCCAGCCGGGCAATGCCggc < 4:189552/149‑2 (MQ=38) gCACCGGTTTATCCGCAGCCCAGTGTGCCGTTGCCTCGTTCGCGGCGTGTGCTGCCGGTGGCGGCCAGGCCAGCGCGAGCCCGCGAGCACAGCCACGAGGGGGCCAGCGAGTTGCTGG‑‑CCGGCATTGCCCGGCTGGCCAATGCCGGTGc > 6:174137/1‑149 (MQ=255) cACCGGTTTATCCGCAGCCCAGTGTGCCGTTGCCTCGTTCGCGGCGTGTGCTGCCGGTGGCGGCCAGTCCAGCGCGAGCCCGCGAGCACAGCCACGAGGGGGCCAGCGAGTTGCTGG‑‑ACGGCATTGGCCAGCCGGGCAATGCCggccag < 1:273260/149‑5 (MQ=255) cAGTGTGCCGTTGCCTCGTTCGCGGCGTGTGCTGCCGGTGGCGGCCAGGCCAGCGCGAGCCCGCGAGCACAGCCACGAGGGGGCCAGCGAGTTGCTGG‑‑CCGGCATTGCCCGGCTGGCCAATGCCGGTGCCAGCGAG‑CAGGCCCGTa < 4:111179/146‑1 (MQ=255) cAGTGTGACGTTGCCTCGTTCGCGGCGTGTGCTGCCGGTGGCGGCCAGGCCAGCGCGAGCCCGCGAGCACAGCCACGAGGGGGCCAGCGAGTTGCTGG‑‑CCGGCATTGCCCGGCTGGCCAATGCCGGTGCCAGCGAG‑CAGGCCCGTa > 3:111179/1‑146 (MQ=255) tgtgCCGTTGCCTCGTTCGCGGCGTGTGCTGCCGGTGGCGGCCAGGCCAGCGCGAGCCCGCGAGCACAGCCACGAGGGGGCCAGCGAGTTGCTGG‑‑CCGGCATTGCCCGGCTGGCCAATGCCGGTGCCAGCGAG‑CAGGCCCGTAGCGAAt < 2:226521/149‑1 (MQ=255) tgCCGTTGCCTCGTTCGCGGCGTGTGCTGCCGGTGGCGGCCAGGCCAGCGCGAGCCCGCGAGCACAGCCACGAGGGGGCCAGCGAGTTGCTGG‑‑CCGGCATTGCCCGGCTGGCCAATGCCGGTGCCAGCGAG‑CAGGCCCGTAGCGAATGc < 5:134447/149‑1 (MQ=255) ccGTTGCCTCGTTCGCGGCGTGTGCTGCCGGTGGCGGCCAGGCCAGCGCGAGCCCGCGAGCACAGCCACGAGGGGGCCAGCGAGTTGCTGG‑‑CCGGCATTGCCCGGCTGGCCAATGCCGGTGCCAGCGAG‑CAGGCCCGTAGCGAATGcc > 1:209400/1‑148 (MQ=255) gCCTCGTTCGCGGCGTGTGCTGCCGGTGGCGGCCAGGCCAGCGCGAGCCCGCGAGCACAGCCACGAGGGGGCCAGCGAGTTGCTGG‑‑CCGGCATTGCCCGGCTGGCCAATGCCGGTGCCAGCGAG‑CAGGCCCGTAGCGAATGCCAACGc > 4:199568/1‑148 (MQ=255) cTCGTTCGCGGCGTGTGCTGCCGGTGGCGGCCAGGCCAGCGCGAGCCCGCGAGCACAGCCACGAGGGGGCCAGCGAGTTGCTGG‑‑CCGGCATTGCCCGGCTGGCCAATGCCGGTGCCAGCGAG‑CAGGCCCGTAGc < 1:218542/134‑1 (MQ=255) cTCGTTCGCGGCGTGTGCTGCCGGTGGCGGCCAGGCCAGCGCGAGCCCGCGAGCACAGCCACGAGGGGGCCAGCGAGTTGCTGG‑‑CCGGCATTGCCCGGCTGGCCAATGCCGGTGCCAGCGAG‑CAGGCCCGTAGc > 2:218542/1‑134 (MQ=255) cTCGTTCGCGGCGTGTGCTGCCGGTGGCGGCCAGGCCAGCGCGAGCCCGCGAGCACAGCCACGAGGGGGCCAGCGAGTTGCTGG‑‑CCGGCATTGCCCGGCTGGCCAATGCCGGTGCCAGCGAG‑CAGGCCCGTAGCGAATGCCAACGCt > 6:278410/1‑147 (MQ=255) cTCGTTCGCGGCGTGTGCTGCCGGTGGCGGCCAGGCCAGCGCGAGCCCGCGAGCACAGCCACGAGGGGGCCAGCGAGTTGCTGG‑‑CCGGCATTGCCCGGCTGGCCAATGCCGGTGCCAGCGAG‑CAGGCCCGTAGCGAATGCCAACGCt < 5:278410/147‑1 (MQ=255) cTCGTTCGCGGCGTGTGCTGCCGGTGGCGGCCAGGCCAGCGCGAGCCCGCGAGCACAGCCACGAGGGGGCCAGCGAGTTGCTGG‑‑CCGGCATTGCCCGGCTGGCCAATGCCGGTGCCAGCGAG‑CAGGCCCGTAGCGAATGCCAACGCTAc < 3:70095/149‑1 (MQ=255) cTCGTTCGCGGCGTGTGCTGCCGGTGGCGGCCAGGCCAGCGCGAGCCCGCGAGCACAGCCACGAGGGGGCCAGCGAGTTGCTGG‑‑CCGGCATTGCCCGGCTGGCCAATGCCGGTGCCAGCGAG‑CAGGCCCGTAGCGAATGCCAACGCTAc > 5:25147/1‑149 (MQ=255) gTTCGCGGCGTGTGCTGCCGGTGGCGGCCAGGCCAGCGCGAGCCCGCGAGCACAGCCACGAGGGGGCCAGCGAGTTGCTGG‑‑CCGGCATTGCCCGGCTGGCCAATGCCGGTGCCAGCGAGCCAGGCCCGTAGCGAATGCCAACGCTAc < 1:14636/147‑1 (MQ=255) gTTCGCGGCGTGTGCTGCCGGTGGCGGCCAGGCCAGCGCGAGCCCGCGAGCACAGCCACGAGGGGGCCAGCGAGTTGCTGG‑‑CCGGCATTGCCCGGCTGGCCAATGCCGGTGCCAGCGAG‑CAGGCCCGTAGCGAATGCCAACGCTACCt > 8:310934/1‑148 (MQ=255) ttCGCGGCGTGTGCTGCCGGTGGCGGCCAGGCCAGCGCGAGCCCGCGAGCACAGCCACGAGGGGGCCAGCGAGTTGCTGG‑‑CCGGCATTGCCCGGCTGGCCAATGCCGGTGCCAGCGAG‑CAGGCCCGTAGCGAATGCCAACGCTACCTGa > 5:210946/1‑149 (MQ=255) cggcgTGTGCTGCCGGTGGCGGCCAGGCCAGCGCGAGCCCGCGAGCACAGCCACGAGGGGGCCAGCGAGTTGCTGG‑‑CCGGCATTGCCCGGCTGGCCAATGCCGGTGCCAGCGAG‑CAGGCCCGTAGCGAATGCCAACGCTACCTCAGCCa < 7:310934/149‑1 (MQ=255) ggcgTGTGCTGCCGGTGGCGGCCAGGCCAGCGCGAGCCCGCGAGCACAGCCACGAGGGGGCCAGCGAGTTGCTGG‑‑CCGGCATTGCCCGGCTGGCCAATGCCGGTGCCAGCGAG‑CAGGCCCGTAGCGAAt > 7:58145/1‑129 (MQ=255) ggcgTGTGCTGCCGGTGGCGGCCAGGCCAGCGCGAGCCCGCGAGCACAGCCACGAGGGGGCCAGCGAGTTGCTGG‑‑CCGGCATTGCCCGGCTGGCCAATGCCGGTGCCAGCGAG‑CAGGCCCGTAGCGAAt < 8:58145/129‑1 (MQ=255) ctgcCGGTGGCGGCCAGGCCAGCGCGAGCCCGCGAGCACAGCCACGAGGGGGCCAGCGAGTTGCTGG‑‑CCGGCATTGCCCGGCTGGCCAATGCCGGTGCCAGCGAG‑CAGGCCCGTAGCGAATGCCAACCCTACCTGAGCCAGTACccgcc > 8:149299/1‑149 (MQ=255) ggccaggccaGCGCGAGCCCGCGAGCACAGCCACGAGGGGGCCAGCGAGTTGCTGG‑‑CCGGCATTGCCCGGCTGGCCAATGCCGGTGCCAGCGAG‑Ca > 6:38834/1‑96 (MQ=255) ggccaggccaGCGCGAGCCCGCGAGCACAGCCACGAGGGGGCCAGCGAGTTGCTGG‑‑CCGGCATTGCCCGGCTGGCCAATGCCGGTGCCAGCGAG‑Ca < 5:38834/96‑1 (MQ=255) gccaggccagCGCGAGCCCGCGAGCACAGCCACGAGGGGGCCAGCGAGTTGCTGG‑‑CCGGCATTGCCCGGCTGGCCAATGCCGGTGCCAGCGAG‑CAGGCCCGTAGCGAATGCCAACGCTACCTGAGCCAGTACCCGCCGTCGGCACAGgt < 6:25147/149‑1 (MQ=255) gccaggccagCGCGAGCCCGCGAGCACAGCCACGAGGGGGCCAGCGAGTTGCTGG‑‑CCGGCATTGCCCGGCTGGCCAATGCCGGTGCCAGCGAG‑CAGGCCCGTAGCGAATGCCAACGCTACCTGAGCCAGTACCCGCCGTCGGCACAGgt < 6:164757/149‑1 (MQ=255) gccaggccagCGCGAGCCCGCGAGCACAGCCACGAGGGGGCCAGCGAGTTGCTGG‑‑CCGGCATTGCCCGGCTGGCCAATGCCGGTGCCAGCGAG‑CAGGCCCGTAGCGAATGCCAACGCTACCTGAGCCAGTACCCGCCGTCGGCACAGgt > 2:2979/1‑149 (MQ=255) ccaggccagCGCGAGCCCGCGAGCACAGCCACGAGGGGGCCAGCGAGTTGCTGG‑‑CCGGCATTGCCCGGCTGGCCAATGCCGGTGCCAGCGAG‑CAGGCCCGTAGCGAATGCCAACGCTACCTGAGCCAGTACCCGCCGTCGGCACAGgtg < 3:199568/149‑1 (MQ=255) caggccagCGCGAGCCCGCGAGCACAGCCACGAGGGGGCCAGCGAGTTGCTGG‑‑CCGGCATTGCCCGGCTGGCCAATGCCGGTGCCAGCGAG‑CAGGCCCGTAGCGAATGCCAACGCTACCTGAGCCAGTACCCGCCGTCGGCACAGgtgt < 2:209400/149‑1 (MQ=255) cagCGCGAGCCCGCGAGCACAGCCACGAGGGGGCCAGCGAGTTGCTGG‑‑CCGGCATTGCCCGGCTGGCCAATGCCGGTGCCAGCGAG‑CAGGCCCGTAGCGAATGCCAACGCTACCTGAGCCAGTACCCGCCGTCGGCACAGGTGtactac > 1:337222/1‑149 (MQ=255) cgcgAGCCCGCGAGCACAGCCACGAGGGGGCCAGCGAGTTGCTGG‑‑CCGGCATTGCCCGGCTGGCCAATGCCGGTGCCAGCGAG‑CAGGCCCGTAGCGAATGCCAACGCTACCTGAGCCAGTACCCGCCGTCGGCACAGGTGTACTActgg < 6:210946/149‑1 (MQ=255) gAGCCCGCGAGCACAGCCACGAGGGGGCCAGCGAGTTGCTGG‑‑CCGGCATTGCCCGGCTGGCCAATGCCGGTGCCAGCGAG‑CAGGCCCGTAGCGAATGCCAACGCTACCTGAGCCAGTACCCGCCGTCGGCACAGGTGTACTActggctg > 7:123598/1‑149 (MQ=255) gCCCGCGAGCACAGCCACGAGGGGGCCAGCGAGTTGCTGG‑‑CCGGCATTGCCCGGCTGGCCAATGCCGGTGCCAGCGAG‑CAGGCCCGTAGCGAATGCCAACGCTACCTGAGCCAGTACCCGCCGTCGGCACAGGTGTACTACTGGCTggg > 8:297403/1‑149 (MQ=255) ccGCGAGGACAGCCTCGTGGGGGCCAGCGAGTTGCTGG‑‑CCGGCATTGCCCGGCTGGCCAATGCCGGTGCCATCGAG‑CAGGGCCGTAGCTAATGCCAACGCTACCTGAGCCAGTACCGGCCGTCGGCACAGGTGTACTACTGGCTGGGtt < 1:146461/149‑1 (MQ=255) ccGCGAGCACAGCCACGAGGGGGCCAGCGAGTTGCTGG‑‑CCGGCATTGCCCGGCTGGCCAATGCCGGTGCCAGCGAG‑CAGGCCCGTAGCGAATGCCAACGCTACCTGAGCCAGTACCCGCCGTCGGCACAGGTGTACTACTGGCTGGGtt > 3:149924/1‑149 (MQ=255) gAGCACAGCCACGAGGGGGCCAGCGAGTTGCTGG‑‑CCGGCATTGCCCGGCTGGCCAATGCCGGTGCCAGCGAG‑CAGGCCCGTAGCGAATGCCAACGCTACCTGAGCCAGTACCCGCCGTCGGCACAGGTGTACTACTGGCTGGGTTTGCt > 8:134527/1‑149 (MQ=255) gCACAGCCACGAGGGGGCCAGCGAGTTGCTGG‑‑CCGGCATTGCCCGGCTGGCCAATGCCGGTGCCAGCGAG‑CAGGCCCGTAGCGAATGCCAACGCTACCTGAGCCAGTACCCGCCGTCGGCACAGGTGTACTACTGGCTGGGTTTGCTCa < 5:75482/149‑1 (MQ=255) gCACAGCCACGAGGGGGCCAGCGAGTTGCTGG‑‑CCGGCATTGCCCGGCTGGCCAATGCCGGTGCCAGCGAG‑CAGGCCCGTAGCGAATGCCAACGCTACCTGAGCCAGTACCCGCCGTCGGCACAGGTGTACTACTGGCTGGGTTTGCTCa < 1:28510/149‑1 (MQ=255) aCGAGGGGGCCAGCGAGTTGCTGG‑‑CCGGCATTGCCCGGCTGGCCAATGCCGGTGCCAGCGAG‑CAGGCCCGTAGCGAATGCCAACGCTACCTGAGCCAGTACCCGCCGTCGGCACAGGTGTACTACTGGCTGGGTTTGCTCAGTGATAcc > 3:136798/1‑149 (MQ=255) tgggggCCAGCGAGTTGCTGG‑‑CCGGCATTGCCCGGCTGGCCAATGCCGGTGCCAGCGAG‑CAGGCCCGTAGCGAATGCCAACGCTACCTGAGCCAGTACCCGCCGTCGGCACAGGTGTACTACTGGCTGGGTTTGCTCAGTGATACCGaa < 4:149924/148‑1 (MQ=255) cggCCAGCGAGTTGCTGG‑‑CCGGCATTGCCCGGCTGGCCAATGCCGGTGCCAGCGAG‑CAGGCCCGTAGCGAATGCCAACGCTACCTGAGCCAGTACCCGCCGTCGGCACAGGTGTACTACTGGCTGGGTTTGCTCAGTGATACCGAAGGc > 2:38072/2‑149 (MQ=255) cAGCGAGTTGCTGG‑‑CCGGCATTGCCCGGCTGGCCAATGCCGGTGCCAGCGAG‑CAGGCCCGTAGCGAATGCCAACGCTACCTGAGCCAGTACCCGCCGTCGGCACAGGTGTACTACTGGCTGGGTTTGCTCAGTGATACCGAAGGCGATg < 6:8783/149‑1 (MQ=255) cAGCGAGTTGCTGG‑‑CCGGCATTGCCCGGCTGGCCAATGCCGGTGCCAGCGAG‑CAGGCCCGTAGCGAATGCCAACGCTACCTGAGCCAGTACCCGCCGTCGGCACAGGTGTACTACTGGCTGGGTTTGCTCAGTGATACCGAAGGCGATg > 8:237912/1‑149 (MQ=255) aGTTGCTGG‑‑CCGGCATTGCCCGGCTGGCCAATGCCGGTGCCAGCGAG‑CAGGCCCGTAGCGAATGCCAACGCTACCTGAGCCAGTACCCGCCGTCGGCACAGGTGTACTACTGGCTGGGTTTGCTCAGTGATACCGAAGGCGATGCgcag < 7:149299/149‑1 (MQ=255) gTTGCTGG‑‑CCGGCATTGCCCGGCTGGCCAATGCCGGTGCCAGCGAG‑CAGGCCCGTAGCGAATGCCAACGCTACCTGAGCCAGTACCCGCCGTCGGCACAGGTGTACTACTGGCTGGGTTTGCTCAGTGATACCGAAGGCGATGCgcag > 6:64279/1‑148 (MQ=255) cTGG‑‑CCGGCATTGCCCGGCTGGCCAATGCCGGTGCCAGCGAG‑CAGGCCCGTAGCGAATGCCAACGCTACCTGAGCCAGTACCCGCCGTCGGCACAGGTGTACTACTGGCTGGGTTTGCTCAGTGATACCGAAGGCGATGCGCAGCAgg < 7:297403/148‑1 (MQ=255) g‑‑CCGGCATTGCCCGGCTGGCCAATGCCGGTGCCAGCGAG‑CAGGCCCGTAGCGAATGCCAACGCTACCTGAGCCAGTACCCGCCGTCGGCACAGGTGTACTACTGGCTGGGTTTGCTCAGTGATACCGAAGGCGATGCGCAGCAGGCGCt > 8:223263/1‑149 (MQ=255) cGGCATTGCCCGGCTGGCCAATGCCGGTGCCAGCGAG‑CAGGCCCGTAGCGAATGCCAACGCTACCTGAGCCAGTACCCGCCGTCGGCACAGGTGTACTACTGGCTGGGTTTGCTCAGTGATACCGAAGGCGAt > 6:236827/1‑133 (MQ=255) cGGCATTGCCCGGCTGGCCAATGCCGGTGCCAGCGAG‑CAGGCCCGTAGCGAATGCCAACGCTACCTGAGCCAGTACCCGCCGTCGGCACAGGTGTACTACTGGCTGGGTTTGCTCAGTGATACCGAAGGCGAt < 5:236827/133‑1 (MQ=255) gCATTGGCCAGCCGGGCAATGCCGGTGCCAGCGAG‑CAGGCCCGTAGCGAATGCCAACGCTACCTGAGCCAGTACCCGCCGTCGGCACAGGTGTACTACTGGCTGGGTTTGCTCAGTGATACCGAAGGCGATGCGCAGCAGGCGCTGAGc > 2:224633/1‑149 (MQ=255) gCATTGCCCGGCTGGCCAATGCCGGTGCCAGCGAG‑CAGGCCCGTAGCGAATGCCAACGCTACCTGAGCCAGTACCCGCCGTCGGCACAGGTGTACTACTGGCTGGGTTTGCTCAGTGATACCGAAGGCGATGCGCAGCAGGCGCTGAGc < 7:223263/149‑1 (MQ=255) aTTGGCCAGCCGGGCAATGCCGGTGCCAGCGAG‑CAGGCCCGTAGCGAATGCCAACGCTACCTGAGCCAGTACCCGCCGTCGGCACAGGTGTACTACTGGCTGGGTTTGCTCAGTGATACCGAAGGCGATGCGCAGCAGGCGCTGAGCCa > 1:137765/1‑149 (MQ=255) ccGGCTGGCCAATGCCGGTGCCAGCGAG‑CAGGCCCGTAGCGAATGCCAACGCTACCTGAGCCAGTACCCGCCGTCGGCACAGGTGtactac > 1:58624/1‑91 (MQ=255) ccGGCTGGCCAATGCCGGTGCCAGCGAG‑CAGGCCCGTAGCGAATGCCAACGCTACCTGAGCCAGTACCCGCCGTCGGCACAGGTGtactac < 2:58624/91‑1 (MQ=255) ggCTGGCCAATGCCGGTGCCAGCGAG‑CAGGCCCGTAGCGAATGCCAACGCTACCTGAGCCAGTACCCGCCGTCGGCACAGGTGTACTACTGGCTGGGTTTGCTCAGTGATACCGAAGGCGATGCGCAGCAGGCGCTGAGCCACTATCg > 7:67119/1‑148 (MQ=255) | GCACCGGTTTATCCGCAGCCCAGTGTGCCGTTGCCTCGTTCGCGGCGTGTGCTGCCGGTGGCGGCCAGGCCAGCGCGAGCCCGCGAGCACAGCCACGAGGGGGCCAGCGAGTTGCTGG‑‑CCGGCATTGCCCGGCTGGCCAATGCCGGTGCCAGCGAG‑CAGGCCCGTAGCGAATGCCAACGCTACCTGAGCCAGTACCCGCCGTCGGCACAGGTGTACTACTGGCTGGGTTTGCTCAGTGATACCGAAGGCGATGCGCAGCAGGCGCTGAGCCACTATCG > NC_002947/1694893‑1695170 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |