| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 196,306 | T→C | 23.6% | N604N (AAT→AAC) | PP_0168 → | putative surface adhesion protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 196,306 | 0 | T | C | 23.6% | 181.5 / 59.9 | 108 | N604N (AAT→AAC) | PP_0168 | putative surface adhesion protein |
| Reads supporting (aligned to +/- strand): ref base T (43/38); new base C (11/14); total (56/52) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.96e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.40e-01 | |||||||||||
Only 100 of 108 total aligned reads displayed.
GTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCA‑CCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCAC > NC_002947/196164‑196443 | gTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCAACGACTCCGTCGACACCACTACCGCGACCCTGACGGCGAGCCCCTCGGTCA‑CCGAAGGCGGCCTGATCACTTACACCGTGACCATGAGCAATCCTGcc > 4:138910/1‑149 (MQ=255) tttCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCA‑CCGACGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCa < 8:142632/147‑1 (MQ=255) tttCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCA‑CCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCa > 7:142632/1‑147 (MQ=39) gAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCA‑CCGAAAGCGGCGTGATCACTTACACCGAGACCCTGAGCAAACCTGCCCAGACGcc > 2:315111/1‑149 (MQ=255) aGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGcc < 1:95028/149‑1 (MQ=255) aGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCA‑CCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCg > 7:134705/1‑149 (MQ=38) aCTGACCCCGAACCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCA‑CCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGa > 3:293827/1‑149 (MQ=37) tGACCCCGAACCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCA‑CCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGa > 6:147354/1‑147 (MQ=35) aCCCCGAACCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCA‑CCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGTTggacag > 8:75083/1‑144 (MQ=19) aCCCCGAACCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCA‑CCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGt > 2:271054/1‑149 (MQ=39) cccGAACCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGTGAGCCCGTCGGTCA‑CCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGa < 2:256631/149‑1 (MQ=255) ccGAACCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGACACAACTACCGCGACCCTGACGGCGAGCCCGTCGGTCA‑CCGAAGGCCGCGTGATCACTTACACCGTGACCCTGCGCAATCCTGCCCAGACGCCGGTGACAGTGAc > 1:248830/1‑149 (MQ=255) cgcaCCCGACGCCGGCTCAGCCCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGCGCCCGTCGGTCA‑CCGAAGGCGGCGTGATCACTGACACCGTGCCCCTGCGCAATCCTGCCCAGCCGCCGGGGACAGTGccc > 5:194266/4‑149 (MQ=11) aaCCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCA‑CCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACa < 5:259089/141‑1 (MQ=38) aaCCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCA‑CCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACa > 6:259089/1‑141 (MQ=38) ccGACGCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTTCCGCGACCCTGACGGCGAGCCCGTCGGTCA‑CCGAAGGCGGCGTGATCACTTACACCGTGACCATGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTc > 1:243934/1‑149 (MQ=255) ccGACGCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCA‑CCGAAGGCGGCGTGATCACTTACACCGTGACCTTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTc < 2:243934/149‑1 (MQ=255) gACGCCGGCTCAGACCACGATCAACGACTCGGTCGACCCCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCA‑CCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTcc > 5:311221/1‑148 (MQ=37) gCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCA‑CCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGcc > 6:176295/1‑118 (MQ=35) gCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCA‑CCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGcc < 5:176295/118‑1 (MQ=35) cccGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCA‑CCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACg < 5:354497/148‑1 (MQ=39) cGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCA‑CCTAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTTTCCAACGGc < 4:264488/149‑1 (MQ=255) gCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCA‑CCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGcc > 5:230186/1‑148 (MQ=39) cACGCTCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCA‑CCGAAGGCGGCGTGATCACATACACCGTGACCCTGAGCAAACCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTa > 5:273722/1‑149 (MQ=255) cACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCA‑CCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCaaa < 1:268656/143‑1 (MQ=39) cACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCA‑CCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCaaa < 6:265488/143‑1 (MQ=39) cACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCA‑CCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCaaa > 2:268656/1‑143 (MQ=39) cACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCA‑CCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCaaa > 5:265488/1‑143 (MQ=39) aTCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCA‑CCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGt > 6:232160/1‑149 (MQ=39) aTCAACGACTCGGTCGACACCACTACCGCGACCCTGACCGCGAGCCCGTCGGTCA‑CCGAAGGCGGCGTGATCACTTACACCGTGACCCTGATCAATCCTGCCCCGACGCCGGTGACAGTGACCCTGTCCAACGTCCAAACCATTACCGt < 6:336044/149‑1 (MQ=255) tctaCGAGTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCA‑CCGAAGGCGGCGTGATCACTTACACCGTGAGCCTGAGCAATGCTGCCCAGACGCCGGTGACAGTGACCCt < 4:131334/121‑1 (MQ=255) tCAACGACTCGCTCGACACCACTACCGCGACCCTGACGCCCAGCCCGTCCGTCA‑CCGAACGCGGCGTGATCACATACACCGAGACCCTGAGCAATCCTGCCCAGCCGCCGGTGACAGTGACCCt > 3:131334/1‑124 (MQ=11) aaCGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCA‑CCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACa < 8:159118/114‑1 (MQ=40) aaCGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCA‑CCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACa > 7:159118/1‑114 (MQ=40) aCGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCA‑CCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGt > 1:83072/1‑109 (MQ=35) aCGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCA‑CCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGt < 2:83072/109‑1 (MQ=35) gACTCGGTCGACTCCACAAGCGCGACCCTTACGGCGAGCCCGTCGGTCA‑CCGAAGGCGGCGTGATCACTTTCACCGTGACCCTGAGCATTCCTGCCCAGACGCGGGTGACAGTGACCCTGTCCAACGGCCAAACCATTAGCGTTGAAGc < 6:155703/149‑1 (MQ=11) cTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCA‑CCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCg < 4:293827/149‑1 (MQ=39) gTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCA‑CCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTg > 8:296568/1‑139 (MQ=40) gTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCA‑CCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTg < 7:296568/139‑1 (MQ=40) gACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCA‑CCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGa < 3:102701/137‑1 (MQ=38) gACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCA‑CCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGa > 4:102701/1‑137 (MQ=38) acacCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCA‑CCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAAcc < 5:232160/149‑1 (MQ=39) cacTACCGCGACCCTGACGGCGAGCCCGTCGGTCA‑CCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAgg > 6:301462/1‑149 (MQ=37) acTACCGCGACCCTGACGGCGAGCCCGTCGGTCA‑CCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAggg < 6:230186/149‑1 (MQ=17) caCCGCGACCCTGACGGCGAGCCCGTCGGTCA‑CCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAggg > 7:149081/2‑147 (MQ=9) caCCGCGACCCTGACGGCGAGCCCGTCGGTCA‑CCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCa < 8:149081/148‑1 (MQ=9) gcgACCCTGACGGCGAGCCCGTCGGTCA‑CCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAgg > 1:286809/1‑142 (MQ=34) gcgACCCTGACGGCGAGCCCGTCGGTCA‑CCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAgg < 2:286809/142‑1 (MQ=34) gcgACCCTGACGGCGAGCCCGTCGGTCA‑CCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGt > 5:117186/1‑149 (MQ=34) gcgACCCTGACGGCGAGCCCGTCGGTCA‑CCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGt > 8:4698/1‑149 (MQ=34) cgACCCTGACGGCGAGCCCGTCGGTCA‑CCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTc < 1:271054/149‑1 (MQ=34) cgACCCTGACGGCGAGCCCGTCGGTCA‑CCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTc < 6:210584/149‑1 (MQ=12) ccTGACTGCGAGCCCGTCGGTCA‑CCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCAt < 2:330906/111‑1 (MQ=17) ccTGACGGCGAGCCCGTCGGTCA‑CCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGAcc < 6:52231/91‑1 (MQ=33) ccTGACGGCGAGCCCGTCGGTCA‑CCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGAcc > 5:52231/1‑91 (MQ=33) aCGGTGAGCCCGTCGGTCA‑CCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTAGAttta > 5:280774/1‑146 (MQ=21) aCGGCGAGCCCGTCGGTCA‑CCGAAGGCGGCGCGATCACTTCCACCGTGACGCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTcc < 5:330530/148‑1 (MQ=11) cccGTCGGTCA‑CCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAgg < 7:276207/125‑1 (MQ=35) cccGTCGGTCA‑CCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAgg > 8:276207/1‑125 (MQ=35) cccGTCGGTCA‑CCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCgg > 7:197311/1‑149 (MQ=255) tCGGTCA‑CCGAAGGCGGGGTGATGACTTACACCGTGACCCTGTGCAATCCTGCCCATACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCCTTGAAGGCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGaa < 1:315111/149‑1 (MQ=11) tCGGTCA‑CCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGaa > 1:20048/1‑149 (MQ=34) gTCA‑CCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGCAGCCGGCAAAACCCCGGGCAGCGGCGATTGCCCGCCCCCGGCGAATgc > 3:73358/1‑148 (MQ=11) gTCA‑CCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGCCCCCGGCGAATGa > 3:77877/1‑149 (MQ=21) gTCA‑CCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGa > 1:209516/1‑149 (MQ=255) tCA‑CCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGAc > 4:329447/1‑149 (MQ=34) gcA‑CCGCAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCCGACGCCGGTGACAGTGCCCCTGTCCAACGGCCAAACCATTACCGTTGCAGCCGGCAAAACCCAGGGCAGCGGCGATTTCCAGACCCCGGCGAATGAc < 6:194266/148‑1 (MQ=11) cGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGAc > 2:251555/1‑145 (MQ=34) cGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGAc < 1:251555/145‑1 (MQ=34) cGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTc > 4:46843/1‑148 (MQ=34) aaGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTac < 3:46843/149‑1 (MQ=34) ggcgTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGt > 8:54124/1‑140 (MQ=255) ggcgTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGt < 7:54124/140‑1 (MQ=255) gcgTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACaacaac < 2:159629/149‑1 (MQ=255) aTCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGtt < 7:19422/148‑1 (MQ=34) aTCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTc > 7:260614/1‑149 (MQ=34) tCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTc > 6:207707/1‑148 (MQ=34) aCTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGa < 4:77877/148‑1 (MQ=34) aCTGACACCGTGACCCGGAGCCATCCTGCCCCGACGCCGGTGACAGTGACCCGGTCCAACGGCCACACCATTCCCGTTGAAGCCGGCAAAACCCCGGGCAGCGGCGATTTCCAGACCCCGGCGAATGCCGGCTACAACAACGGTTCGa < 4:73358/148‑1 (MQ=11) ttACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCa < 3:234256/111‑1 (MQ=11) ttACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCa > 4:234256/1‑111 (MQ=11) ttACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACt > 3:325623/1‑148 (MQ=255) acacCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACt < 4:325623/146‑1 (MQ=255) acCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTc < 6:62382/105‑1 (MQ=11) acCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTc > 5:62382/1‑105 (MQ=11) cGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAgtg > 7:126586/1‑149 (MQ=35) cGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGtt < 2:266715/137‑1 (MQ=255) cGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGtt > 1:266715/1‑137 (MQ=255) gTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAgtgt > 5:162605/1‑149 (MQ=37) tGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTc < 8:260614/149‑1 (MQ=37) tGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGGTCGCCTGTGAGTGTc > 2:343276/1‑149 (MQ=255) tGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTc < 8:197311/149‑1 (MQ=11) aCCCTGAGCACCCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTAAAACAACGGTTCGACTGTCAGCGTCAc > 2:292966/1‑149 (MQ=11) aCCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCa < 6:117186/148‑1 (MQ=37) gtcTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAACCCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGACGATTTCCATACCCCGGCGAATGACGTCGACACAAACGGTTCGACAGTCAGAGTCAc > 6:98321/3‑148 (MQ=11) ccTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCa > 4:1723/1‑140 (MQ=255) ccTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCa < 3:1723/140‑1 (MQ=255) tGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGa > 5:159345/1‑91 (MQ=255) tGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGa < 6:159345/91‑1 (MQ=255) | GTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCA‑CCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCAC > NC_002947/196164‑196443 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |