Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 1,786,669 | A→T | 9.8% | K167M (AAG→ATG) | tsf → | elongation factor Ts |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 1,786,669 | 0 | A | T | 9.8% | 143.3 / 5.8 | 51 | K167M (AAG→ATG) | tsf | elongation factor Ts |
Reads supporting (aligned to +/- strand): ref base A (23/23); new base T (2/3); total (25/26) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.58e-01 |
CTCGTGAAGCCCTGGTTGCCAAGTGCGGCGAGAACGTCAACATCCGTCGCCTGGTGCGCGTTGAGGGTGACGTTGTCGGTGCCTACCTGCACGGCAACAAGATCGGCGCTGTCGTCGTTCTGAAAGGCGGTGA‑CGTGGAGCTGGCGAAGAACATCGCCATGCACGTTGCAGCTTCGAACCCTGAGTTCCTGGATTCGTCGGAAATCTCCGCCGAGGCCATCGAGCGCGAGAAGAATGTCTTCCTGCAGCTGAACGCCGACAAGATCGCCGGCAAGCCGGAAAACATCGTTGAGAAC > NC_002947/1786522‑1786817 | ctCGTGAAGCCCTGGTTGCCAAGTGCGGCGAGAACGTCAACATCCGTCGCCTGGTGCGCGTTGAGGGTGACGTTGTCGGTGCCTACCTGCACGGCAACAAGATCGGCGCTGTCGTCGTTCTGAAAGGCGGTGA‑CGTGGAGCTGGCgaa < 2:327334/148‑1 (MQ=255) tCGTGAAGCCCTGGTTGCCAAGTGCGGCGAGAACGTCAACATCCGTCGCCTGGTGCGCGTTGAGGGTGACGTTGTCGGTGCCTACCTGCACGGCAACAAGATCGGCGCTGTCGTCGTTCTGAAAGGCGGTGA‑CGTGGAGCTGGCgaag > 8:171077/1‑148 (MQ=255) tGAAGCCCTGGTTGCCAAGTGCGGCGAGAACGTCAACATCCGTCGCCTGGTGCGCGTTGAGGGTGACGTTGTCGGTGCCTACCTGCACGGCAACAAGATCGGCGCTGTCGTCGTTCTGAAAGGCGGTGA‑CGTGGAGCTGGCGAAGAAc > 4:176673/1‑148 (MQ=255) cccTGGTTGCCAAGTGCGGCGAGAACGTCAACATCCGTCGCCTGGTGCGCGTTGAGGGTGACGTTGTCGGTGCCTACCTGCACGGCAACAAGATCGGCGCTGTCGTCGTTCTGAAAGGCGGTGA‑CGTGGAGCTGGCGAAGAACATCGc > 3:91833/1‑148 (MQ=255) cccTGGTTGCCAAGTGCGGCGAGAACGTCAACATCCGTCGCCTGGTGCGCGTTGAGGGTGACGTTGTCGGTGCCTACCTGCACGGCAACAAGATCGGCGCTGTCGTCGTTCTGAAAGGCGGTGA‑CGTGGAGCTGGCGAAGAACATCGc > 1:154826/1‑148 (MQ=255) gTTGCCAAGTGCGGCGAGAACGTCAACATCCGTTGCCTGGTGCGCGTTGAGGGTGACGTTGTCGGTGCCTACCTGCACGGCAACAAGATCGGCGCTGTCGTCGTTCTGAAAGGCGGTGA‑CGTGGAGCTGGCGATGTTCTTCGCCagc < 8:33540/147‑3 (MQ=255) cAAGTGCGGCGAGAACGTCAACATCCGTCGCCTGGTGCGCGTTGAGGGTGACGTTGTCGGTGCCTACCTGCACGGCAACAAGATCGGCGCTGTCGTCGTTCTGAAAGGCGGTGA‑CGTGGAGCTGGCGAAGAACATCGCCATGCACGTTg > 5:319027/1‑149 (MQ=255) cAAGTGCGGCGAGAACGTCAACATCCGTCGCCTGGTGCGCGTTGAGGGTGACGTTGTCGGTGCCTACCTGCACGGCAACAAGATCGGCGCTGTCGTCGTTCTGAAAGGCGGTGA‑CGTGGAGCTGGCGAAGAACATCGCCATGCACGTTg > 4:110330/1‑149 (MQ=255) tGCGGCGAGAACGTCAACATCCGTCGCCTGGTGCGCGTTGAGGGTGACGTTGTCGGTGCCTACCTGCACGGCAACAAGATCGGCGCTGTCGTCGTTCTGAAAGGCGGTGA‑CGTGGAGCTGGCGAAGAACATCGCCATGCACGTTGCAGc > 2:12143/1‑149 (MQ=255) ggcgAGAACGTCAACATCCGTCGCCTGGTGCGCGTTGAGGGTGACGTTGTCGGTGCCTACCTGCACGGCAACAAGATCGGCGCTGTCGTCGTTCTGAAAGGCGGTGA‑CGTGGAGCTGGCGAAGAACATCGCCATGCACGTTGCAGCTTc < 7:171077/149‑1 (MQ=255) gagaACGTCAACATCCGTCGCCTGGTGCGCGTTGAGGGTGACGTTGTCGGTGCCTACCTGCACGGCAACAAGATCGGCGCTGTCGTCGTTCTGAAAGGCGGTGA‑CGTGGAGCTGGCGAAGAACATCGCCATGCACGTTGCAGCTTCGaa > 1:328706/1‑149 (MQ=255) gaACGTCAACATCCGTCGCCTGGTGCGCGTTGAGGGTGACGTTGTCGGTGCCTACCTGCACGGCAACAAGATCGGCGCTGTCGTCGTTCTGAAAGGCGGTGA‑CGTGGAGCTGGCGAAGAACATCGCCATGCACGTTGCAGCTTCGAAcc > 3:289638/1‑149 (MQ=255) aCGTCAACATCCGTCGCCTGGTGCGCGTTGAGGGTGACGTTGTCGGTGCCTACCTGCACGGCAACAAGATCGGCGCTGTCGTCGTTCTGAAAGGCGGTGA‑CGTGGAGCTGGCGAAGAACATCGCCATGCACGTTGCAGCTTCGAACCCt < 8:176723/149‑1 (MQ=255) cGTCAACATCCGTCGCCTGGTGCGCGTTGAGGGTGACGTTGTCGGTGCCTACCTGCACGGCAACAAGATCGGCGCTGTCGTCGTTCTGAAAGGCGGTGA‑CGTAGAGCTGGCGAAGAACATCGCCATGCACGTTGTAGCTTCGAACCCt > 4:319115/1‑148 (MQ=255) cGTCAACATCCGTCGCCTGGTGCGCGTTGAGGGTGACGTTGTCGGTGCCTACCTGCACGGCAACAAGATCGGCGCTGTCGTCGTTCTGAAAGGCGGTGA‑CGTAGAGCTGGCGAAGAACATCGCCATGCACGTTGTAGCTTCGAACCCt < 3:319115/148‑1 (MQ=255) gTCAACATCCGTCGCCTGGTGCGCGTTGAGGGTGACGTTGTCGGTGCCTACCTGCACGGCAACAAGATCGGCGCTGTCGTCGTTCTGAAAGGCGGTGA‑CGTGGAGCTGGCGAAGAACATCGCCATGCACGTTGCAGCTTCGAACCCt > 1:19737/1‑147 (MQ=255) gTCAACATCCGTCGCCTGGTGCGCGTTGAGGGTGACGTTGTCGGTGCCTACCTGCACGGCAACAAGATCGGCGCTGTCGTCGTTCTGAAAGGCGGTGA‑CGTGGAGCTGGCGAAGAACATCGCCATGCACGTTGCAGCTTCAAACCCt > 3:301806/1‑147 (MQ=255) cAACATCCGTCGCCTGGTGCGCGTTGAGGGTGACGTTGTCGGTGCCTACCTGCACGGCAACAAGATCGGCGCTGTCGTCGTTCTGAAAGGCGGTGACCGTGGAGCTGGCGAAGAACATCGCCATGc < 1:20682/126‑1 (MQ=255) cAACATCCGTCGCCTGGTGCGCGTTGAGGGTGACGTTGTCGGTGCCTACCTGCACGGCAACAAGATCGGCGCTGTCGTCGTTCTGAAAGGCGGTGA‑CGTGGAGCTGGCGAAGAACATCGCCATGc > 2:20682/1‑125 (MQ=255) aaCATCCGTCGCCTGGTGCGCGTTGAGGGTGACGTTGTCGGTGCCTACCTGCACGGCAACAAGATCGGCGCTGTCGTCGTTCTGAAAGGCGGTGA‑CGTGGAGCTGGCGAAGAACATCGCCATGCACGTTGCAGCTTCGAACCCTGAGtt > 2:345638/1‑149 (MQ=255) aTCCGTCGCCTGGTGCGCGTTGAGGGTGACGTTGTCGGTGCCTACCTGCACGGCAACAAGATCGGCGCTGTCGTCGTTCTGAAAGGCGGTGA‑CGTGGAGCTGGCGAAGAACATCGCCATGCACGTTGCAGCTTCGAACCCTGAGTTCCt < 4:289638/149‑1 (MQ=255) cGTCGCCTGGTGCGCGTTGAGGGTGACGTTGTCGGTGCCTACCTGCACGGCAACAAGATCGGCGCTGTCGTCGTTCTGAAAGGCGGTGA‑CGTGGAGCTGGCGAAGAACATCGCCATGCACGTTGCAGCTTCGAACCCTGAGTTCCTgg < 1:345638/148‑1 (MQ=255) gTGCGCGTTGAGGGTGACGTTGTCGGTGCCTACCTGCACGGCAACAAGATCGGCGCTGTCGTCGTTCTGAAAGGCGGTGA‑CGTGGAGCTGGCGAAGAACATCGCCATGCACGTTGCAGCTTCGAACCCTGAGTTCCTGGATTCGTCGGa < 3:176673/149‑1 (MQ=255) gcgcGTTGAGGGTGACGTTGTCGGTGCCTACCTGCACGGCAACAAGATCGGCGCTGTCGTCGTTCTGAAAGGCGGTGA‑CGTGGAGCTGGCGAAGAACATCGCCATGCACGTTGCAGCTTCGAACCCTGAGTTCCTGGATTCGTCGGaaa > 5:25117/1‑149 (MQ=255) gAGGGTGACGTTGTCGGTGCCTACCTGCACGGCAACAAGATCGGCGCTGTCGTCGTTCTGAAAGGCGGTGA‑CGTGGAGCTGGCGATGAACATCGCCATGCACGTTGCAGCTTCGAACCCTGAGTTCCt > 1:145545/1‑128 (MQ=255) gAGGGTGACGTTGTCGGTGCCTACCTGCACGGCAACAAGATCGGCGCTGTCGTCGTTCTGAAAGGCGGTGA‑CGTGGAGCTGGCGATGAACATCGCCATGCACGTTGCAGCTTCGAACCCTGAGTTCCt < 2:145545/128‑1 (MQ=255) aGGGTGACGTTGTCGGTGCCTACCTGCACGGCAACAAGATCGGCGCTGTCGTCGTTCTGAAAGGCGGTGA‑CGTGGAGCTGGCGAAGAACATCGCCATGCACGTTGCAGCTTCGAACCCTGAGTTCCTGGATTCGTCGGAAATCTccgc < 6:25117/148‑1 (MQ=255) gACGTTGTCGGTGCCTACCTGCACGGCAACAAGATCGGCGCTGTCGTAGTTCTGAAAGGCGGTGA‑CGTGGAGCTGGCGAAGAACATCGCCATGCACGTTGCAGCTTCGAACCCTGAGTTCCTGGATTCGTCGGAAATCTCCGCCGAGGc > 4:312174/1‑149 (MQ=255) gTTGTCGGTGCCTACCTGCACGGCAACAAGATCGGCGCTGTCGTCGTTCTGAAAGGCGGTGA‑CGTGGAGCTGGCGATGTTCTTCGCCagc < 3:163099/90‑3 (MQ=255) gTTGTCGGTGCCTACCTGCACGGCAACAAGATCGGCGCTGTCGTCGTTCTGAAAGGCGGTGA‑CGTGGAGCTGGCGATGTTCTTCGCCagc > 4:163099/1‑88 (MQ=255) ggTGCCTACCTGCACGGCAACAAGATCGGCGCTGTCGTCGTTCTGAAAGGCGGTGA‑CGTGGAGCTGGCGAAGAACATCGCCa > 1:57591/1‑82 (MQ=255) ggTGCCTACCTGCACGGCAACAAGATCGGCGCTGTCGTCGTTCTGAAAGGCGGTGA‑CGTGGAGCTGGCGAAGAACATCGCCa < 2:57591/82‑1 (MQ=255) ggTGCCTACCTGCACGGCAACAAGATCGGCGCTGTCGTCGTTCTGAAAGGCGGTGA‑CGTGGAGCTGGCGAAGAACATCGCCATGCACGTTGCAGCTTCGAACCCTGAGTTCCTGGATTCGTCGGAAATCTccgc > 6:226513/1‑134 (MQ=255) ggTGCCTACCTGCACGGCAACAAGATCGGCGCTGTCGTCGTTCTGAAAGGCGGTGA‑CGTGGAGCTGGCGAAGAACATCGCCATGCACGTTGCAGCTTCGAACCCTGAGTTCCTGGATTCGTCGGAAATCTccgc < 5:226513/134‑1 (MQ=255) tGCCTACCTGCACGGCAACAAGATCGGCGCTGTCGTCGTTCTGAAAGGCGGTAA‑CGTGTAGCTGGCGAAGAACATCGCCATGCACGTTGCAGCTTCGAACCCTGAGTTCCTGGATTCGTCGGAAATCTCCGCCGAGGCCATCGAGcgcg < 7:188398/149‑1 (MQ=255) cTACCTGCACGGCAACAAGATCGGCGCTGTCGTCGTTCTGAAAGGCGGTGA‑CGTGGAGCTGGCGAAGAACATCGCCATGCACGTTGCAGCTTCGAACCCTGAGTTCCTGGATTCGTCGGAAATCTCCGCCGAGGCCATc > 2:152019/1‑139 (MQ=255) cTACCTGCACGGCAACAAGATCGGCGCTGTCGTCGTTCTGAAAGGCGGTGA‑CGTGGAGCTGGCGAAGAACATCGCCATGCACGTTGCAGCTTCGAACCCTGAGTTCCTGGATTCGTCGGAAATCTCCGCCGAGGCCATc < 1:152019/139‑1 (MQ=255) cTACCTGCACGGCAACAAGATCGGCGCTGTCGTCGTTCTGAAAGGCGGTGA‑CGTGGAGCTGGCGAAGAACATCGCCATGCACGTTGCAGCTTCGAACCCTGAGTTCCTGGATTCGTCGGAAATCTCCGCCGAGGCCATCGAGCGCgag > 8:261530/1‑148 (MQ=255) ccTGCACGGCAACAAGATCGGCGCTGTCGTCGTTCTGAAAGGCTGTGA‑CGTGGAGCTGGCGAAGAACATCGCCATGCACGTTGCAGCTTCGAACCCTGAGTTCCTGGATTCGTCGGAAATCTCCGCCGAGGCCATCTAGCGCGagaag < 3:312174/148‑1 (MQ=255) cACGGCAACAAGATCGGCGCTGTCGTCGTTCTGAAAGGCGGTGA‑CGTGGAGCTGGCGAAGAACATCGCCATGCACGTTGCAGCTTCGAACCCTGAGTTCCTGGATTCGTCGGaa < 1:207141/114‑1 (MQ=255) cACGGCAACAAGATCGGCGCTGTCGTCGTTCTGAAAGGCGGTGA‑CGTGGAGCTGGCGAAGAACATCGCCATGCACGTTGCAGCTTCGAACCCTGAGTTCCTGGATTCGTCGGaa > 2:207141/1‑114 (MQ=255) cACGGCAACAAGATCGGCGCTGGCGTCGTTCTGAAAGGCGGTGA‑CGTGGAGCTGGCGAAGAACATCGCCATGCACGTTGCAGCTTCGAACCCCGAGTTCCTGGATTCGTCGGAAATCTCCGCCGAGGCCATCGAGCGCGAGAAGAAt < 3:105904/147‑1 (MQ=255) aCGGCAACAAGATCGGCGCTGTCGTCGTTCTGAAAGGCGGTGA‑CGTGGAGCTGGCGAAGAACATCGCCATGCACGTTGCAGCTTCGAACCCTGAGTTCCTGGATTCGTCGGAAATCTCCGCCGAGGCCATCGAGCGCGAGAAGAATGTc < 7:261530/149‑1 (MQ=255) ggCAACAAGATCGGCGCTGTCGTCGTTCTGAAAGGCGGTGA‑CGTGGAGCTGGCGAAGAACATCGCCATGCACGTTGCAGCTTCGAACCCTGAGTTCCTGGATTCGTCGGAAATCTccgcc > 4:281295/1‑120 (MQ=255) ggCAACAAGATCGGCGCTGTCGTCGTTCTGAAAGGCGGTGA‑CGTGGAGCTGGCGAAGAACATCGCCATGCACGTTGCAGCTTCGAACCCTGAGTTCCTGGATTCGTCGGAAATCTccgcc < 3:281295/120‑1 (MQ=255) aacaaGATCGGCGCTGTCGTCGTTCTGAAAGGCGGTGA‑CGTGGAGCTGGCGAAGAACATCGCCATGCACGTTGCAGCTTCGAACCCTGAGTTCCTGGATTCGTCGGAAATCTCCGCCGAGGCCATCGAGCGCGAGAAGAATGTCTTCCt < 3:110330/149‑1 (MQ=255) aTCGGCGCTGTCGTCGTTCTGAAAGGCGGTGA‑CGTGGAGCTGGCGAAGAACATCGCCATGCACGTTGCAGCTTCGAACCCTGAGTTCCTGGATTCGTCGGAAATCTCCGCCGAGGCCATCGAGCGCGAGAAGAATGTCTTCCTGCAGCt < 6:319027/149‑1 (MQ=255) tcgtcgTTCTGAAAGGCGGTGA‑CGTGGAGCTGGCGAAGAACATCGCCATGCACGTTGCAGCTTCGAACCCTGAGTTCCTGGATTCGTCGGAAATCTCCGCCGAGGCCATCGAGCGCGAGAAGAATGTCTTCCTGCAGCTGAACGCCGa < 1:12143/148‑1 (MQ=255) tcgtcgTTCTGAAAGGCGGTGA‑CGTGGAGCTGGCGAAGAACATCGCCATGCACGTTGCAGCTTCGAACCCTGAGTTCCTGGATTCGTCGGAAATCTCCGCCGAGGCCATCGAGCGCGAGAAGAATGTCTTCCTGCAGCTGAACGCCGAc < 2:19737/149‑1 (MQ=255) gCGGTGA‑CGTGGAGCTGGCGAAGAACATCGCCATGCACGTTGCAGCTTCGAACCCTGAGTTCCTGGATTCGTCGGAAATCTCCGCCGAGGCCATCGAGCGCGAGAAGAATGTCTTCCTGCAGCTGAACGCCGACAAGATCGCCGGCAAg < 2:154826/149‑1 (MQ=255) a‑CGTGGAGCTGGCGAAGAACATCGCCATGCACGTTGCAGCTTCGAACCCTGAGTTCCTGGATTCGTCGGAAATCTCCGCCGAGGCCATCGAGCGCGAGAAGAATGTCTTCCTGCAGCTGAACGCCGACAAGATCGCCGGCAAGCCGGaa < 4:91833/149‑1 (MQ=255) ggAGCTGGCGAAGAACATCGCCATGCACGTTGCAGCTTCGAACCCTGAGTTCCTGGATTCGTCGGAAATCTCCGCCGAGGCCATCGAGCGCGAGAAGAATGTCTTCCTGCAGCTGAACGCCGACAAGATCGCCGGCAAGCCGGAAAACa > 2:98837/1‑149 (MQ=255) cTGGCGAAGAACATCGCCATGCACGTTGCAGCTTCGAACCCTGAGTTCCTGGATTCGTCGGAAATCTCCGCCGAGGCCATCGAGCGCGAGAAGAATGTCTTCCTGCAGCTGAACGCCGACAAGATCGCCGGCAAGCCGGAAAACATCGt > 7:178570/1‑149 (MQ=255) gaagaaCATCGCCATGCACGTTGCAGCTTCGAACCCTGAGTTCCTGGATTCGTCGGAAATCTCCGCCGAGGCCATCGAGCGCGAGAAGAATGTCTTCCTGCAGCTGAACGCCGACAAGATCGCCGGCAAGcc < 4:241748/132‑1 (MQ=255) gaagaaCATCGCCATGCACGTTGCAGCTTCGAACCCTGAGTTCCTGGATTCGTCGGAAATCTCCGCCGAGGCCATCGAGCGCGAGAAGAATGTCTTCCTGCAGCTGAACGCCGACAAGATCGCCGGCAAGcc > 3:241748/1‑132 (MQ=255) gaagaaCATCGCCATGCACGTTGCAGCTTCGAACCCTGAGTTCCTGGATTCGTCGGAAATCTCCGCCGAGGCCATCGAGCGCGAGAAGAATGTCTTCCTGCAGCTGAACGCCGACAAGATCGCCGGCAAGCCGGAAAACATCGTTgag > 8:301394/1‑148 (MQ=255) agaaCATCGCCATGCACGTTGCAGCTTCGAACCCTGAGTTCCTGGATTCGTCGGAAATCTCCGCCGAGGCCATCGAGCGCGAGAAGAATGTCTTCCTGCAGCTGAACGCCGACAAGATCGCCGGCAAGCCGGAAAACATCGTTGAGAAc < 7:301394/149‑1 (MQ=255) agaaCATCGCCATGCACGTTGCAGCTTCGAACCCTGAGTTCCTGGATTCGTCGGAAATCTCCGCCGAGGCCATCGAGCGCGAGAAGAATGTCTTCCTGCAGCTGAACGCCGACAAGATCGCCGGCAAGCCGGAAAACATCGTTGAGAAc < 2:328706/149‑1 (MQ=255) | CTCGTGAAGCCCTGGTTGCCAAGTGCGGCGAGAACGTCAACATCCGTCGCCTGGTGCGCGTTGAGGGTGACGTTGTCGGTGCCTACCTGCACGGCAACAAGATCGGCGCTGTCGTCGTTCTGAAAGGCGGTGA‑CGTGGAGCTGGCGAAGAACATCGCCATGCACGTTGCAGCTTCGAACCCTGAGTTCCTGGATTCGTCGGAAATCTCCGCCGAGGCCATCGAGCGCGAGAAGAATGTCTTCCTGCAGCTGAACGCCGACAAGATCGCCGGCAAGCCGGAAAACATCGTTGAGAAC > NC_002947/1786522‑1786817 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |