Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_002947 1,786,669 A→T 9.8% K167M (AAG→ATG)  tsf → elongation factor Ts

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0029471,786,6690AT 9.8% 143.3 / 5.8 51K167M (AAG→ATG) tsfelongation factor Ts
Reads supporting (aligned to +/- strand):  ref base A (23/23);  new base T (2/3);  total (25/26)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.58e-01

CTCGTGAAGCCCTGGTTGCCAAGTGCGGCGAGAACGTCAACATCCGTCGCCTGGTGCGCGTTGAGGGTGACGTTGTCGGTGCCTACCTGCACGGCAACAAGATCGGCGCTGTCGTCGTTCTGAAAGGCGGTGACGTGGAGCTGGCGAAGAACATCGCCATGCACGTTGCAGCTTCGAACCCTGAGTTCCTGGATTCGTCGGAAATCTCCGCCGAGGCCATCGAGCGCGAGAAGAATGTCTTCCTGCAGCTGAACGCCGACAAGATCGCCGGCAAGCCGGAAAACATCGTTGAGAAC  >  NC_002947/1786522‑1786817
                                                                                                                                                    |                                                                                                                                                    
ctCGTGAAGCCCTGGTTGCCAAGTGCGGCGAGAACGTCAACATCCGTCGCCTGGTGCGCGTTGAGGGTGACGTTGTCGGTGCCTACCTGCACGGCAACAAGATCGGCGCTGTCGTCGTTCTGAAAGGCGGTGACGTGGAGCTGGCgaa                                                                                                                                                      <  2:327334/148‑1 (MQ=255)
 tCGTGAAGCCCTGGTTGCCAAGTGCGGCGAGAACGTCAACATCCGTCGCCTGGTGCGCGTTGAGGGTGACGTTGTCGGTGCCTACCTGCACGGCAACAAGATCGGCGCTGTCGTCGTTCTGAAAGGCGGTGACGTGGAGCTGGCgaag                                                                                                                                                     >  8:171077/1‑148 (MQ=255)
    tGAAGCCCTGGTTGCCAAGTGCGGCGAGAACGTCAACATCCGTCGCCTGGTGCGCGTTGAGGGTGACGTTGTCGGTGCCTACCTGCACGGCAACAAGATCGGCGCTGTCGTCGTTCTGAAAGGCGGTGACGTGGAGCTGGCGAAGAAc                                                                                                                                                  >  4:176673/1‑148 (MQ=255)
         cccTGGTTGCCAAGTGCGGCGAGAACGTCAACATCCGTCGCCTGGTGCGCGTTGAGGGTGACGTTGTCGGTGCCTACCTGCACGGCAACAAGATCGGCGCTGTCGTCGTTCTGAAAGGCGGTGACGTGGAGCTGGCGAAGAACATCGc                                                                                                                                             >  3:91833/1‑148 (MQ=255)
         cccTGGTTGCCAAGTGCGGCGAGAACGTCAACATCCGTCGCCTGGTGCGCGTTGAGGGTGACGTTGTCGGTGCCTACCTGCACGGCAACAAGATCGGCGCTGTCGTCGTTCTGAAAGGCGGTGACGTGGAGCTGGCGAAGAACATCGc                                                                                                                                             >  1:154826/1‑148 (MQ=255)
              gTTGCCAAGTGCGGCGAGAACGTCAACATCCGTTGCCTGGTGCGCGTTGAGGGTGACGTTGTCGGTGCCTACCTGCACGGCAACAAGATCGGCGCTGTCGTCGTTCTGAAAGGCGGTGACGTGGAGCTGGCGATGTTCTTCGCCagc                                                                                                                                         <  8:33540/147‑3 (MQ=255)
                   cAAGTGCGGCGAGAACGTCAACATCCGTCGCCTGGTGCGCGTTGAGGGTGACGTTGTCGGTGCCTACCTGCACGGCAACAAGATCGGCGCTGTCGTCGTTCTGAAAGGCGGTGACGTGGAGCTGGCGAAGAACATCGCCATGCACGTTg                                                                                                                                  >  5:319027/1‑149 (MQ=255)
                   cAAGTGCGGCGAGAACGTCAACATCCGTCGCCTGGTGCGCGTTGAGGGTGACGTTGTCGGTGCCTACCTGCACGGCAACAAGATCGGCGCTGTCGTCGTTCTGAAAGGCGGTGACGTGGAGCTGGCGAAGAACATCGCCATGCACGTTg                                                                                                                                  >  4:110330/1‑149 (MQ=255)
                       tGCGGCGAGAACGTCAACATCCGTCGCCTGGTGCGCGTTGAGGGTGACGTTGTCGGTGCCTACCTGCACGGCAACAAGATCGGCGCTGTCGTCGTTCTGAAAGGCGGTGACGTGGAGCTGGCGAAGAACATCGCCATGCACGTTGCAGc                                                                                                                              >  2:12143/1‑149 (MQ=255)
                          ggcgAGAACGTCAACATCCGTCGCCTGGTGCGCGTTGAGGGTGACGTTGTCGGTGCCTACCTGCACGGCAACAAGATCGGCGCTGTCGTCGTTCTGAAAGGCGGTGACGTGGAGCTGGCGAAGAACATCGCCATGCACGTTGCAGCTTc                                                                                                                           <  7:171077/149‑1 (MQ=255)
                             gagaACGTCAACATCCGTCGCCTGGTGCGCGTTGAGGGTGACGTTGTCGGTGCCTACCTGCACGGCAACAAGATCGGCGCTGTCGTCGTTCTGAAAGGCGGTGACGTGGAGCTGGCGAAGAACATCGCCATGCACGTTGCAGCTTCGaa                                                                                                                        >  1:328706/1‑149 (MQ=255)
                               gaACGTCAACATCCGTCGCCTGGTGCGCGTTGAGGGTGACGTTGTCGGTGCCTACCTGCACGGCAACAAGATCGGCGCTGTCGTCGTTCTGAAAGGCGGTGACGTGGAGCTGGCGAAGAACATCGCCATGCACGTTGCAGCTTCGAAcc                                                                                                                      >  3:289638/1‑149 (MQ=255)
                                 aCGTCAACATCCGTCGCCTGGTGCGCGTTGAGGGTGACGTTGTCGGTGCCTACCTGCACGGCAACAAGATCGGCGCTGTCGTCGTTCTGAAAGGCGGTGACGTGGAGCTGGCGAAGAACATCGCCATGCACGTTGCAGCTTCGAACCCt                                                                                                                    <  8:176723/149‑1 (MQ=255)
                                  cGTCAACATCCGTCGCCTGGTGCGCGTTGAGGGTGACGTTGTCGGTGCCTACCTGCACGGCAACAAGATCGGCGCTGTCGTCGTTCTGAAAGGCGGTGACGTAGAGCTGGCGAAGAACATCGCCATGCACGTTGTAGCTTCGAACCCt                                                                                                                    >  4:319115/1‑148 (MQ=255)
                                  cGTCAACATCCGTCGCCTGGTGCGCGTTGAGGGTGACGTTGTCGGTGCCTACCTGCACGGCAACAAGATCGGCGCTGTCGTCGTTCTGAAAGGCGGTGACGTAGAGCTGGCGAAGAACATCGCCATGCACGTTGTAGCTTCGAACCCt                                                                                                                    <  3:319115/148‑1 (MQ=255)
                                   gTCAACATCCGTCGCCTGGTGCGCGTTGAGGGTGACGTTGTCGGTGCCTACCTGCACGGCAACAAGATCGGCGCTGTCGTCGTTCTGAAAGGCGGTGACGTGGAGCTGGCGAAGAACATCGCCATGCACGTTGCAGCTTCGAACCCt                                                                                                                    >  1:19737/1‑147 (MQ=255)
                                   gTCAACATCCGTCGCCTGGTGCGCGTTGAGGGTGACGTTGTCGGTGCCTACCTGCACGGCAACAAGATCGGCGCTGTCGTCGTTCTGAAAGGCGGTGACGTGGAGCTGGCGAAGAACATCGCCATGCACGTTGCAGCTTCAAACCCt                                                                                                                    >  3:301806/1‑147 (MQ=255)
                                     cAACATCCGTCGCCTGGTGCGCGTTGAGGGTGACGTTGTCGGTGCCTACCTGCACGGCAACAAGATCGGCGCTGTCGTCGTTCTGAAAGGCGGTGACCGTGGAGCTGGCGAAGAACATCGCCATGc                                                                                                                                        <  1:20682/126‑1 (MQ=255)
                                     cAACATCCGTCGCCTGGTGCGCGTTGAGGGTGACGTTGTCGGTGCCTACCTGCACGGCAACAAGATCGGCGCTGTCGTCGTTCTGAAAGGCGGTGACGTGGAGCTGGCGAAGAACATCGCCATGc                                                                                                                                        >  2:20682/1‑125 (MQ=255)
                                      aaCATCCGTCGCCTGGTGCGCGTTGAGGGTGACGTTGTCGGTGCCTACCTGCACGGCAACAAGATCGGCGCTGTCGTCGTTCTGAAAGGCGGTGACGTGGAGCTGGCGAAGAACATCGCCATGCACGTTGCAGCTTCGAACCCTGAGtt                                                                                                               >  2:345638/1‑149 (MQ=255)
                                         aTCCGTCGCCTGGTGCGCGTTGAGGGTGACGTTGTCGGTGCCTACCTGCACGGCAACAAGATCGGCGCTGTCGTCGTTCTGAAAGGCGGTGACGTGGAGCTGGCGAAGAACATCGCCATGCACGTTGCAGCTTCGAACCCTGAGTTCCt                                                                                                            <  4:289638/149‑1 (MQ=255)
                                            cGTCGCCTGGTGCGCGTTGAGGGTGACGTTGTCGGTGCCTACCTGCACGGCAACAAGATCGGCGCTGTCGTCGTTCTGAAAGGCGGTGACGTGGAGCTGGCGAAGAACATCGCCATGCACGTTGCAGCTTCGAACCCTGAGTTCCTgg                                                                                                          <  1:345638/148‑1 (MQ=255)
                                                     gTGCGCGTTGAGGGTGACGTTGTCGGTGCCTACCTGCACGGCAACAAGATCGGCGCTGTCGTCGTTCTGAAAGGCGGTGACGTGGAGCTGGCGAAGAACATCGCCATGCACGTTGCAGCTTCGAACCCTGAGTTCCTGGATTCGTCGGa                                                                                                <  3:176673/149‑1 (MQ=255)
                                                       gcgcGTTGAGGGTGACGTTGTCGGTGCCTACCTGCACGGCAACAAGATCGGCGCTGTCGTCGTTCTGAAAGGCGGTGACGTGGAGCTGGCGAAGAACATCGCCATGCACGTTGCAGCTTCGAACCCTGAGTTCCTGGATTCGTCGGaaa                                                                                              >  5:25117/1‑149 (MQ=255)
                                                              gAGGGTGACGTTGTCGGTGCCTACCTGCACGGCAACAAGATCGGCGCTGTCGTCGTTCTGAAAGGCGGTGACGTGGAGCTGGCGATGAACATCGCCATGCACGTTGCAGCTTCGAACCCTGAGTTCCt                                                                                                            >  1:145545/1‑128 (MQ=255)
                                                              gAGGGTGACGTTGTCGGTGCCTACCTGCACGGCAACAAGATCGGCGCTGTCGTCGTTCTGAAAGGCGGTGACGTGGAGCTGGCGATGAACATCGCCATGCACGTTGCAGCTTCGAACCCTGAGTTCCt                                                                                                            <  2:145545/128‑1 (MQ=255)
                                                               aGGGTGACGTTGTCGGTGCCTACCTGCACGGCAACAAGATCGGCGCTGTCGTCGTTCTGAAAGGCGGTGACGTGGAGCTGGCGAAGAACATCGCCATGCACGTTGCAGCTTCGAACCCTGAGTTCCTGGATTCGTCGGAAATCTccgc                                                                                       <  6:25117/148‑1 (MQ=255)
                                                                    gACGTTGTCGGTGCCTACCTGCACGGCAACAAGATCGGCGCTGTCGTAGTTCTGAAAGGCGGTGACGTGGAGCTGGCGAAGAACATCGCCATGCACGTTGCAGCTTCGAACCCTGAGTTCCTGGATTCGTCGGAAATCTCCGCCGAGGc                                                                                 >  4:312174/1‑149 (MQ=255)
                                                                       gTTGTCGGTGCCTACCTGCACGGCAACAAGATCGGCGCTGTCGTCGTTCTGAAAGGCGGTGACGTGGAGCTGGCGATGTTCTTCGCCagc                                                                                                                                         <  3:163099/90‑3 (MQ=255)
                                                                       gTTGTCGGTGCCTACCTGCACGGCAACAAGATCGGCGCTGTCGTCGTTCTGAAAGGCGGTGACGTGGAGCTGGCGATGTTCTTCGCCagc                                                                                                                                         >  4:163099/1‑88 (MQ=255)
                                                                             ggTGCCTACCTGCACGGCAACAAGATCGGCGCTGTCGTCGTTCTGAAAGGCGGTGACGTGGAGCTGGCGAAGAACATCGCCa                                                                                                                                           >  1:57591/1‑82 (MQ=255)
                                                                             ggTGCCTACCTGCACGGCAACAAGATCGGCGCTGTCGTCGTTCTGAAAGGCGGTGACGTGGAGCTGGCGAAGAACATCGCCa                                                                                                                                           <  2:57591/82‑1 (MQ=255)
                                                                             ggTGCCTACCTGCACGGCAACAAGATCGGCGCTGTCGTCGTTCTGAAAGGCGGTGACGTGGAGCTGGCGAAGAACATCGCCATGCACGTTGCAGCTTCGAACCCTGAGTTCCTGGATTCGTCGGAAATCTccgc                                                                                       >  6:226513/1‑134 (MQ=255)
                                                                             ggTGCCTACCTGCACGGCAACAAGATCGGCGCTGTCGTCGTTCTGAAAGGCGGTGACGTGGAGCTGGCGAAGAACATCGCCATGCACGTTGCAGCTTCGAACCCTGAGTTCCTGGATTCGTCGGAAATCTccgc                                                                                       <  5:226513/134‑1 (MQ=255)
                                                                               tGCCTACCTGCACGGCAACAAGATCGGCGCTGTCGTCGTTCTGAAAGGCGGTAACGTGTAGCTGGCGAAGAACATCGCCATGCACGTTGCAGCTTCGAACCCTGAGTTCCTGGATTCGTCGGAAATCTCCGCCGAGGCCATCGAGcgcg                                                                      <  7:188398/149‑1 (MQ=255)
                                                                                  cTACCTGCACGGCAACAAGATCGGCGCTGTCGTCGTTCTGAAAGGCGGTGACGTGGAGCTGGCGAAGAACATCGCCATGCACGTTGCAGCTTCGAACCCTGAGTTCCTGGATTCGTCGGAAATCTCCGCCGAGGCCATc                                                                             >  2:152019/1‑139 (MQ=255)
                                                                                  cTACCTGCACGGCAACAAGATCGGCGCTGTCGTCGTTCTGAAAGGCGGTGACGTGGAGCTGGCGAAGAACATCGCCATGCACGTTGCAGCTTCGAACCCTGAGTTCCTGGATTCGTCGGAAATCTCCGCCGAGGCCATc                                                                             <  1:152019/139‑1 (MQ=255)
                                                                                  cTACCTGCACGGCAACAAGATCGGCGCTGTCGTCGTTCTGAAAGGCGGTGACGTGGAGCTGGCGAAGAACATCGCCATGCACGTTGCAGCTTCGAACCCTGAGTTCCTGGATTCGTCGGAAATCTCCGCCGAGGCCATCGAGCGCgag                                                                    >  8:261530/1‑148 (MQ=255)
                                                                                     ccTGCACGGCAACAAGATCGGCGCTGTCGTCGTTCTGAAAGGCTGTGACGTGGAGCTGGCGAAGAACATCGCCATGCACGTTGCAGCTTCGAACCCTGAGTTCCTGGATTCGTCGGAAATCTCCGCCGAGGCCATCTAGCGCGagaag                                                                 <  3:312174/148‑1 (MQ=255)
                                                                                         cACGGCAACAAGATCGGCGCTGTCGTCGTTCTGAAAGGCGGTGACGTGGAGCTGGCGAAGAACATCGCCATGCACGTTGCAGCTTCGAACCCTGAGTTCCTGGATTCGTCGGaa                                                                                               <  1:207141/114‑1 (MQ=255)
                                                                                         cACGGCAACAAGATCGGCGCTGTCGTCGTTCTGAAAGGCGGTGACGTGGAGCTGGCGAAGAACATCGCCATGCACGTTGCAGCTTCGAACCCTGAGTTCCTGGATTCGTCGGaa                                                                                               >  2:207141/1‑114 (MQ=255)
                                                                                         cACGGCAACAAGATCGGCGCTGGCGTCGTTCTGAAAGGCGGTGACGTGGAGCTGGCGAAGAACATCGCCATGCACGTTGCAGCTTCGAACCCCGAGTTCCTGGATTCGTCGGAAATCTCCGCCGAGGCCATCGAGCGCGAGAAGAAt                                                              <  3:105904/147‑1 (MQ=255)
                                                                                          aCGGCAACAAGATCGGCGCTGTCGTCGTTCTGAAAGGCGGTGACGTGGAGCTGGCGAAGAACATCGCCATGCACGTTGCAGCTTCGAACCCTGAGTTCCTGGATTCGTCGGAAATCTCCGCCGAGGCCATCGAGCGCGAGAAGAATGTc                                                           <  7:261530/149‑1 (MQ=255)
                                                                                            ggCAACAAGATCGGCGCTGTCGTCGTTCTGAAAGGCGGTGACGTGGAGCTGGCGAAGAACATCGCCATGCACGTTGCAGCTTCGAACCCTGAGTTCCTGGATTCGTCGGAAATCTccgcc                                                                                      >  4:281295/1‑120 (MQ=255)
                                                                                            ggCAACAAGATCGGCGCTGTCGTCGTTCTGAAAGGCGGTGACGTGGAGCTGGCGAAGAACATCGCCATGCACGTTGCAGCTTCGAACCCTGAGTTCCTGGATTCGTCGGAAATCTccgcc                                                                                      <  3:281295/120‑1 (MQ=255)
                                                                                               aacaaGATCGGCGCTGTCGTCGTTCTGAAAGGCGGTGACGTGGAGCTGGCGAAGAACATCGCCATGCACGTTGCAGCTTCGAACCCTGAGTTCCTGGATTCGTCGGAAATCTCCGCCGAGGCCATCGAGCGCGAGAAGAATGTCTTCCt                                                      <  3:110330/149‑1 (MQ=255)
                                                                                                     aTCGGCGCTGTCGTCGTTCTGAAAGGCGGTGACGTGGAGCTGGCGAAGAACATCGCCATGCACGTTGCAGCTTCGAACCCTGAGTTCCTGGATTCGTCGGAAATCTCCGCCGAGGCCATCGAGCGCGAGAAGAATGTCTTCCTGCAGCt                                                <  6:319027/149‑1 (MQ=255)
                                                                                                               tcgtcgTTCTGAAAGGCGGTGACGTGGAGCTGGCGAAGAACATCGCCATGCACGTTGCAGCTTCGAACCCTGAGTTCCTGGATTCGTCGGAAATCTCCGCCGAGGCCATCGAGCGCGAGAAGAATGTCTTCCTGCAGCTGAACGCCGa                                       <  1:12143/148‑1 (MQ=255)
                                                                                                               tcgtcgTTCTGAAAGGCGGTGACGTGGAGCTGGCGAAGAACATCGCCATGCACGTTGCAGCTTCGAACCCTGAGTTCCTGGATTCGTCGGAAATCTCCGCCGAGGCCATCGAGCGCGAGAAGAATGTCTTCCTGCAGCTGAACGCCGAc                                      <  2:19737/149‑1 (MQ=255)
                                                                                                                              gCGGTGACGTGGAGCTGGCGAAGAACATCGCCATGCACGTTGCAGCTTCGAACCCTGAGTTCCTGGATTCGTCGGAAATCTCCGCCGAGGCCATCGAGCGCGAGAAGAATGTCTTCCTGCAGCTGAACGCCGACAAGATCGCCGGCAAg                       <  2:154826/149‑1 (MQ=255)
                                                                                                                                    aCGTGGAGCTGGCGAAGAACATCGCCATGCACGTTGCAGCTTCGAACCCTGAGTTCCTGGATTCGTCGGAAATCTCCGCCGAGGCCATCGAGCGCGAGAAGAATGTCTTCCTGCAGCTGAACGCCGACAAGATCGCCGGCAAGCCGGaa                 <  4:91833/149‑1 (MQ=255)
                                                                                                                                         ggAGCTGGCGAAGAACATCGCCATGCACGTTGCAGCTTCGAACCCTGAGTTCCTGGATTCGTCGGAAATCTCCGCCGAGGCCATCGAGCGCGAGAAGAATGTCTTCCTGCAGCTGAACGCCGACAAGATCGCCGGCAAGCCGGAAAACa             >  2:98837/1‑149 (MQ=255)
                                                                                                                                             cTGGCGAAGAACATCGCCATGCACGTTGCAGCTTCGAACCCTGAGTTCCTGGATTCGTCGGAAATCTCCGCCGAGGCCATCGAGCGCGAGAAGAATGTCTTCCTGCAGCTGAACGCCGACAAGATCGCCGGCAAGCCGGAAAACATCGt         >  7:178570/1‑149 (MQ=255)
                                                                                                                                                  gaagaaCATCGCCATGCACGTTGCAGCTTCGAACCCTGAGTTCCTGGATTCGTCGGAAATCTCCGCCGAGGCCATCGAGCGCGAGAAGAATGTCTTCCTGCAGCTGAACGCCGACAAGATCGCCGGCAAGcc                     <  4:241748/132‑1 (MQ=255)
                                                                                                                                                  gaagaaCATCGCCATGCACGTTGCAGCTTCGAACCCTGAGTTCCTGGATTCGTCGGAAATCTCCGCCGAGGCCATCGAGCGCGAGAAGAATGTCTTCCTGCAGCTGAACGCCGACAAGATCGCCGGCAAGcc                     >  3:241748/1‑132 (MQ=255)
                                                                                                                                                  gaagaaCATCGCCATGCACGTTGCAGCTTCGAACCCTGAGTTCCTGGATTCGTCGGAAATCTCCGCCGAGGCCATCGAGCGCGAGAAGAATGTCTTCCTGCAGCTGAACGCCGACAAGATCGCCGGCAAGCCGGAAAACATCGTTgag     >  8:301394/1‑148 (MQ=255)
                                                                                                                                                    agaaCATCGCCATGCACGTTGCAGCTTCGAACCCTGAGTTCCTGGATTCGTCGGAAATCTCCGCCGAGGCCATCGAGCGCGAGAAGAATGTCTTCCTGCAGCTGAACGCCGACAAGATCGCCGGCAAGCCGGAAAACATCGTTGAGAAc  <  7:301394/149‑1 (MQ=255)
                                                                                                                                                    agaaCATCGCCATGCACGTTGCAGCTTCGAACCCTGAGTTCCTGGATTCGTCGGAAATCTCCGCCGAGGCCATCGAGCGCGAGAAGAATGTCTTCCTGCAGCTGAACGCCGACAAGATCGCCGGCAAGCCGGAAAACATCGTTGAGAAc  <  2:328706/149‑1 (MQ=255)
                                                                                                                                                    |                                                                                                                                                    
CTCGTGAAGCCCTGGTTGCCAAGTGCGGCGAGAACGTCAACATCCGTCGCCTGGTGCGCGTTGAGGGTGACGTTGTCGGTGCCTACCTGCACGGCAACAAGATCGGCGCTGTCGTCGTTCTGAAAGGCGGTGACGTGGAGCTGGCGAAGAACATCGCCATGCACGTTGCAGCTTCGAACCCTGAGTTCCTGGATTCGTCGGAAATCTCCGCCGAGGCCATCGAGCGCGAGAAGAATGTCTTCCTGCAGCTGAACGCCGACAAGATCGCCGGCAAGCCGGAAAACATCGTTGAGAAC  >  NC_002947/1786522‑1786817

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: