| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 1,819,791 | T→A | 8.0% | intergenic (+28/‑447) | rpoS → / → PP_1624 | RNA polymerase sigma S factor/group II intron‑encoding maturase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 1,819,791 | 0 | T | A | 8.0% | 252.7 / 7.9 | 84 | intergenic (+28/‑447) | rpoS/PP_1624 | RNA polymerase sigma S factor/group II intron‑encoding maturase |
| Reads supporting (aligned to +/- strand): ref base T (33/44); new base A (5/2); total (38/46) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.36e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.39e-01 | |||||||||||
TGTTGGGCTGGAGATCGGCCTTACCCGTGAACGGGTGCGGCAAATCCAGGTGGAAGGGCTCAAGCGCTTGCGCGAGATCCTTGAAAAGAATGGTCTGTCCAGCGAGTCATTGTTCCAGTAGCTAGCGCTGTAACAAAAAACGCCCCGGTGATC‑TCGGGGCG‑TTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTATGCGCAACCCGCTTGGTTGTGGTGGCCAAGTGGGTGACTTGGAGGTGAAAGTCCTCTACACACCCGGCAAGGGGAAGTGTTAGCCGGAGGCAAGGGT > NC_002947/1819643‑1819935 | tGTTGGGCTGGAGATCGGCCTTACCCGTGAACGGGTGCGGCAAATCCAGGTGGAAGGGCTCAAGCGCTTGCGCGAGATCCTTGAAAAGAATGGTCTGTCCAGCGAGTCATTGTTCCAGTAGCTAGCGCTGTAACAAAAAACGCCCCGGt < 8:189991/149‑1 (MQ=255) gTTGGGCTGGAGATCGGCCTTACCCGTGAACGGGTGCGGCAAATCCAGGTGGAAGGGCTCAAGCGCTTGCGCGAGATCCTTGAAAAGAATGGTCTGTCCAGCGAGTCATTGTTCCAGTAGCTAGCGCTGTAACAAAAAACGCCCCGGt > 3:37911/1‑148 (MQ=255) gTTGGGCTGGAGATCGGCCTTACCCGTGAACGGGTGCGGCAAATCCAGGTGGAAGGGCTCAAGCGCTTGCGCGAGATCCTTGAAAAGAATGGTCTGTCCAGCGAGTCATTGTTCCAGTAGCTAGCGCTGTAACAAAAAACGCCCCGGt > 6:166610/1‑148 (MQ=255) gggCTGGAGATCGGCCTTACCCGTGAACGGGTGCGGCAAATCCAGGTGGAAGGGCTCAAGCGCTTGCGCGAGATCCTTGAAAAGAATGGTCTGTCCAGCGAGTCATTGTTCCAGTAGCTAGCGCTGTAACAAAAAACGCCCCGGTGAt < 6:23249/148‑1 (MQ=255) cTGGAGATCGGCCTTACACGTGAACGGGTGCGGCAAATCCATTTGGAAGGGCTCAAGCGCTTGCGCGAGATCCTTGAAAAGAATGGTCTGTCCAGCGAGTCATTGTACCAGTAGCTAGCGCTGTAACAAAAAACGCCCCGGTGATC‑TCg < 8:95981/149‑1 (MQ=255) tGGAGATCGGCCTTACCCGTGAACGGGTGCGGCAAATCCAGGTGGAAGGGCTCAAGCGCTTGCGCGAGATCCTTGAAAAGAATGGTCTGTCCAGCGAGTCATTGTTCCAGTAGCTAGCGCTGTAACAAAAAACGCCCCGGTGATC‑TCgg > 6:280428/1‑149 (MQ=255) gagaTCGGCCTTACCCGTGAACGGGTGCGGCAAATCCAGGTGGAAGGGCTCAAGCGCTTGCGCGAGATCCTTGAAAAGAATGGTCTGTCCAGCGAGTCATTGTTCCAGTAGCTAGCGCTGTAACAAAAAACGCCCCGGTGATC‑TCgggg > 2:276757/1‑149 (MQ=255) gagaTCGGCCTTACCCGTGAACGGGTGCGGCAAATCCAGGTGGAAGGGCTCAAGCGCTTGCGCGAGATCCTTGAAAAGAATGGTCTGTCCAGCGAGTCATTGTTCCAGTAGCTAGCGCTGTAACAAAAAACGCCCCGGTGATC‑TCggg < 5:247574/148‑1 (MQ=255) gagaTCGGCCTTACCCGTGAACGGGTGCGGCAAATCCAGGTGGAAGGGCTCAAGCGCTTGCGCGAGATCCTTGAAAAGAATGGTCTGTCCAGCGAGTCATTGTTCCAGTAGCTAGCGCTGTAACAAAAAACGCCCCGGTGATC‑TCgg < 2:253156/147‑1 (MQ=255) gaTCGGCCTTACCCGTGAACGGGTGCGGCAAATCCAGGTGGAAGGGCTCAAGCGCTTGCGCGAGATCCTTGAAAAGAATGGTCTGTCCAGCGAGTCATTGTTCCAGTAGCTAGCGCTGTAACAAAAAACGCCCCGGTGATC‑TCGGGGCg > 1:303525/1‑149 (MQ=255) cGGCCTTACCCGTGAACGGGTGCGGCAAATCCAGGTGGAAGGGCTCAAGCGCTTGCGCGAGATCCTTGAAAAGAATGGTCTGTCCAGCGAGTCATTGTTCCAGTAGCTAGCGCTGTAACAAAAAACGCCCCGGTGATC‑TCGGGGCG‑tt < 2:57967/148‑1 (MQ=255) ccgcaCCCGTTCACGGGTGCGGCAAATCCAGGTGGAAGGGCTCAAGCGCTTGCGCGAGATCCTTGAAAAGAATGGTCTGTCTAGCGAGTCATTGTTCCAGTAGCTAGCGCTGTAACAAAAAACGCCCCGGTGATC‑TCGGGGCG‑TTTTtg > 7:230923/5‑149 (MQ=255) cTTACCCGTGAACGGGTGCGGCAAATCCAGGTGGAAGGGCTCAAGCGCTTGCGCGAGATCCTTGAAAAGAATGGTCTGTCCAGCGAGGCATTGTTCCAGTAGCTAGCGCTGTAACAAAAAACGCCCCTGTGATC‑TCGGGGCG‑TTTTtgt < 2:195013/149‑1 (MQ=255) aCCCGTGAACGGGTGCGGCAAATCCAGGTGGAAGGGCTCAAGCGCTTGCGCGAGATCCTTGAAAAGAATGGTCTGTCCAGCGAGTCATTTTTCCAGTAGCTAGCGCTGTAACAAAAAACGCCCCGGTGATC‑TCGGGGCG‑TTTTtgtg < 4:57541/147‑1 (MQ=255) aCCCGGGAACGGGTGCGGCAAATCCAGGGGGAAGGGCTCAAGCGCTTGCGCGAGATCCTTGAAAAGAATGGTCTGTCCAGCGAGTCATTGTTCCAGTAGCTAGCGCTGTAACAAAAAACGCCCCGGTGATC‑TCGGGGCG‑TTTTtgtgt < 7:65826/148‑1 (MQ=255) ccGTGAACGGGTGCGGCAAATCCAGGTGGAAGGGCTCAAGCGCTTGCGCGAGATCCTTGAAAAGAATGGTCTGTCCAGCGAGTCATTGTTCCAGTAGCTAGCGCTGTAACAAAAAACGCCCCGGTGATC‑TCGGGGCG‑TTTTTGTGTgcg > 6:269079/1‑149 (MQ=255) aCGGGTGCGGCAAATCCAGGTGGAAGGGCTCAAGCGCTTGCGCGAGATCCTTGAAAAGAATGGTCTGTCCAGCGAGTCATTGTTCCAGTAGCTAGCGCTGTAACAAAAAACGCCCCGGTGATC‑TCGGGGCG‑TTTTTGTGTGCGCCAgg < 8:120026/148‑1 (MQ=255) ggtaaggCAAATCCAGGTGGAAGGGCTCAAGCGCTTGCGCGAGATCCTTGAAAAGAATGGTCTGTCCAGCGAGTCATTGTTCCAGTAGCTAGCGCTGTAACAAAAAACGCCCCGGTGATC‑TCGGGGCG‑TTTTTGTGTGCGCCAGGCATg < 6:285953/144‑1 (MQ=255) ggTGCGGCAAATCCAGGTGGAAGGGCTCAAGCGCTTGCGCGAGATCCTTGAAAAGAATGGTCTGTCCAGCGAGTCATTGTTCCAGTAGCTAGCGCTGTAACAAAAAACGCCCCGGTGATC‑TCGGGGCG‑TTTTTGTGTGCGCCAGGCATg < 5:268754/149‑1 (MQ=255) cGGCAAATCCAGGTGGAAGGGCTCAAGCGCTTGCGCGAGATCCTTGAAAAGAATGGTCTGTCCAGCGAGTCATTGTTCCAGTAGCTAGCGCTGTAACAAAAAACGCCCCGGTGATC‑TCGGGGCG‑TTTTTGTGTGCGCCAGGCATGgcg < 6:193064/148‑1 (MQ=255) cGGCAAATCCAGGTGGAAGGGCTCAAGCGCTTGCGCGAGATCCTTGAAAAGAATGGTCTGTCCAGCGAGTCATTGTTCCAGTAGCTAGCGCTGTAACAAAAAACGCCCCGGTGATC‑TCGGGGCG‑TTTTTGTGTGCGCCAGGCATGgcg < 4:2553/148‑1 (MQ=255) ggCAAATCCAGGTGGAAGGGCTCAAGCGCTTGCGCGAGATCCTTGAAAAGAATGGTCTGTCCAGCGAGTCATTGTTCCAGTAGCTAGCGCTGTAACAAAAAACGCCCCGGTGATC‑TCGGGGCG‑TTTTTGTGTGCGCCAGGCATGGcgcg > 7:257405/1‑149 (MQ=255) aTCCAGGTGGAAGGGCTCAAGCGCTTGCGCGAGATCCTTGAAAAGAATGGTCTGTCCAGCGAGTCATTGTTCCAGTAGCTAGCGCTGTAACAAAAAACGCCCCGGTGATC‑TCGGGGCG‑TTTTTGTGTGCGCCAGGCATGGCGCGTTgcg < 1:276757/149‑1 (MQ=255) tCCAGGTGGAAGGGCTCAAGCGCTTGCGCGAGATCCTTGAAAAGAATGGTCTGTCCAGCGAGTCATTGTTCCAGTAGCTAGCGCTGTAACAAAAAACGCCCCGGTGATC‑TCg < 6:321746/112‑1 (MQ=255) tCCAGGTGGAAGGGCTCAAGCGCTTGCGCGAGATCCTTGAAAAGAATGGTCTGTCCAGCGAGTCATTGTTCCAGTAGCTAGCGCTGTAACAAAAAACGCCCCGGTGATC‑TCg > 5:321746/1‑112 (MQ=255) ccAGGTGGAAGGGCTCAAGCGCTTGCGCGAGATCCTTGAAAAGAATGGTCTGTCCAGCGAGTCATTGTTCCAGTAGCTAGCGCTGTAACAAAAAACGCCCCGGTGATC‑TCGGGGCG‑TTTTTGTGTGCGCCAGGCATGGCGCGTTGcgcg > 1:168181/1‑149 (MQ=255) ccAGGTGGAAGGGCTCAAGCGCTGGCGCGAGAGCCTTGAAAAGAATGGTCTGTCCAGCGAGTCATTGTTCCAGTAGCTAGCGCTGTAACAAAAAACGCCCCGGAGATC‑TCGGGGCG‑TTTTTGTGTGCGCCAGGCATGGCGCGTTGcgcg > 6:203229/1‑149 (MQ=255) cAGGTGGAAGGGCTCAAGCGCTTGCGCGAGATCCTTGAAAAGAATGGTCTGTCCAGCGAGTCATTGTTCCAGTAGCTAGCGCTGTAACAAAAAACGCCCCGGTGATC‑TCGGGGCG‑TTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGt < 5:269079/149‑1 (MQ=255) tGGAAGGGCTCAAGCGCTTGCGCGAGATCCTTGAAAAGAATGGTCTGTCCAGCGAGTCATTGTTCCAGTAGCTAGCGCTGTAACAAAAAACGCCCCGGTGATC‑TCGGGGCG‑TTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTATgc < 5:166610/149‑1 (MQ=255) ggAAGGGCTCAAGCGCTTGCGCGAGATCCTTGAAAAGAATGGTCTGTCCAGCGAGTCATTGTTCCAGTAGCTAGCGCTGTAACAAAAAACGCCCCGGTGATC‑TCGGGGCG‑TTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTATgcg > 7:67052/1‑149 (MQ=255) ggAAGGGCTCAAGCGCTTGCGCGAGATCCTTGAAAAGAATGGTCTGTCCAGCGAGTCATTGCTCCAGTAGCTAGCGCTGTAACAAAAAACGCCCCGGTGATC‑TCGGGGCG‑TTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTATgcg > 2:28330/1‑149 (MQ=255) gAAGGGCTCAAGCGCTTGCGCGAGATCCTTGAAAAGAATGGTCTGTCCAGCGAGTCATTGTTCCAGTAGCTAGCGCTGTAACAAAAAACGCCCCGGTGATC‑TCGGGGCG‑TTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTATgcg > 1:211069/1‑148 (MQ=255) aGGGCTCAAGCGCTTGCGCGAGATCCTTGAAAAGAATGGTCTGTCCAGCGAGTCATTGTTCCAGTAGCTAGCGCTGTAACAAAAAACGCCCCGGTGATC‑TCGGGGCG‑TTTTTGTGTGCGCCAGGCATGGCGCGTTgc < 6:129128/137‑1 (MQ=255) aGGGCTCAAGCGCTTGCGCGAGATCCTTGAAAAGAATGGTCTGTCCAGCGAGTCATTGTTCCAGTAGCTAGCGCTGTAACAAAAAACGCCCCGGTGATC‑TCGGGGCG‑TTTTTGTGTGCGCCAGGCATGGCGCGTTgc > 5:129128/1‑137 (MQ=255) tCAAGCGCTTGCGCGAGATCCTTGAAAAGAATGGTCTGTCCAGCGAGTCATTGTTCCAGTAGCTAGCGCTGTAACAAAAAACGCCCCGGTGATC‑TCGGGGCG‑TTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTATGCGCAACCCGc > 7:219853/1‑149 (MQ=255) aaGCGCTTGCGCGAGATCCTTGAAAAGAATGGTCTGTCCAGCGAGTCATTGTTCCAGTAGCTAGCGCTGTAACAAAAAACGCCCCGGTGATC‑TCGGGGCG‑‑TTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTATGCGCAACCCGCTTg > 7:169621/1‑149 (MQ=255) cgcTTGCGCGAGATCCTTGAAAAGAATGGTCTGTCCAGCGAGTCATTGTTCCAGTAGCTAGCGCTGTAACAAAAAACGCCCCGGTGATC‑TCGGGGCG‑‑TTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTATGCGCAACCCGCTTGGtt < 8:169621/149‑1 (MQ=255) gcTTGCGCGAGATCCTTGAAAAGAATGGTCTGTCCAGCGAGTCATTGTTCCAGTAGCTAGCGCTGTAACAAAAAACGCCCCGGTGATC‑TCGGGGCG‑TTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTATGCGCAACCCGCTTGGtt < 2:231144/149‑1 (MQ=255) ttGCGCGAGATCCTTGAAAAGAATGGTCTGTCCAGCGAGTCATTGTTCCAGTAGCTAGCGCTGTAACAAAAAACGCCCCGGTGATC‑TCGGGGCG‑TTTTTGTGTGCGCCAGGCATgg > 7:139682/1‑116 (MQ=255) gcgcGAGATCCTTGAAAAGAATGGTCTGTCCAGCGAGTCATTGTTCCAGTAGCTAGCGCTGTAACAAAAAACGCCCCGGTGATC‑TCGGGGCG‑TTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTATGCGCAACCCGCTTGGTtgt < 7:83366/147‑1 (MQ=255) cgAGATCCTTGAAAAGAATGGTCTGTCCAGCGAGTCATTGTTCCAGTAGCTAGCGCTGTAACAAAAAACGCCCCGGTGATC‑TCGGGGCG‑TTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTATGCGCAACCCGCTTGGTTGtggtgg < 5:61351/149‑1 (MQ=255) gagaTCCTTGAAAAGAATGGTCTGTCCAGCGAGTCATTGTTCCAGTAGCTAGCGCTGTAACAAAAAACGCCCCGGTGATC‑TCGGGGCG‑TTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTATGCGCAACCCGCTTGGTTGTGGTGGc > 2:344778/1‑149 (MQ=255) gAAAAGAATGGTCTGTCCAGCGAGTCATTGTTCCAGTAGCTAGCGGTGTAACAAAAAACGCCCCGGTGATC‑TCGGGGCG‑TTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTATGCGCAACCCGCTTGGTTGTGGTGGCCAAGTGGGt > 1:241623/1‑149 (MQ=255) gAAAAGAATGGTCTGTCCAGCGAGTCATTGTTCCAGTAGCTAGCGCTGTAACAAAAAACGCCCCGGTGATC‑TCGGGGCG‑TTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTATGCGCAACCCGCTTGGTTGtggtgg < 1:193541/139‑1 (MQ=255) gAAAAGAATGGTCTGTCCAGCGAGTCATTGTTCCAGTAGCTAGCGCTGTAACAAAAAACGCCCCGGTGATC‑TCGGGGCG‑TTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTATGCGCAACCCGCTTGGTTGtggtgg > 2:193541/1‑139 (MQ=255) aaaaGAATGGTCTGTCCAGCGAGTCATTGTTCCAGTAGCTAGCGCTGTAACAAAAAACGCCCCGGTGATC‑TCGGGGCG‑TTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTATGCGCAACCCGCTTGGtt < 2:280804/131‑1 (MQ=255) aaaGAATGGTCTGTCCAGCGAGTCATTGTTCCAGTAGCTAGCGCTGTAACAAAAAACGCCCCGGTGATC‑TCGGGGCG‑TTTTTGTGTGCGCCAGGCATGgcgc < 7:173710/102‑1 (MQ=255) aaaGAATGGTCTGTCCAGCGAGTCATTGTTCCAGTAGCTAGCGCTGTAACAAAAAACGCCCCGGTGATC‑TCGGGGCG‑TTTTTGTGTGCGCCAGGCATGgcgc > 8:173710/1‑102 (MQ=255) aaGAATGGTCTGTCCAGCGAGTCATTGTTCCAGTAGCTAGCGCTGTAACAAAAAACGCCCCGGTGATC‑TCGGGGCG‑TTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGt > 5:160697/1‑110 (MQ=255) aaGAATGGTCTGTCCAGCGAGTCATTGTTCCAGTAGCTAGCGCTGTAACAAAAAACGCCCCGGTGATC‑TCGGGGCG‑TTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGt < 6:160697/110‑1 (MQ=255) tGGTCTGTCCAGCGAGTCATTGTTCCAGTAGCTAGCGCTGTAACAAAAAACGCCCCGGTGATC‑TCGGGGCG‑TTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTATGCGCAACCCGCTTGGTTGTGGTGGCCAAGTGGGTGACTTGGa < 8:281973/149‑1 (MQ=255) ggTCTGTCCAGCGAGTCATTGTTCCAGTAGCTAGCGCTGTAACAAAAAACGCCCCGGTGATC‑TCGGGGCG‑TTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTATGCGCAACCCGCTTGGTTGTGGTGGCCAAGTGGGTGACTTGGa < 2:168181/148‑1 (MQ=255) gtctgtctAGCGAGTCATTGTTCCAGTAGCTAGCGCTGTAACAAAAAACGCCCCGGTGATC‑TCGGGGCG‑TTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTATGCGCAACCCGCTTGGTTGTGGTGGCCAAGTGGGTGACTTGGAgg < 8:230923/149‑1 (MQ=255) gTCTGTCCAGCGAGTCATTGTTCCAGTAGCTAGCGCTGTAACAAAAAACGCCCCGGTGATC‑TCGGGGCG‑TTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTATGCGCAACCCGCTTGGTTGTGGTGGCCAAGTGGGTGACTTGGAgg > 1:161152/1‑149 (MQ=255) gTCTGTCCAGCGAGTCATTGTTCCAGTAGCTAGCGCTGTAACAAAAAACGCCCCGGTGATC‑TCGGGGCG‑TTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTATGCGCAACCCGCTTGGTTGTGGTGGCCAAGTGGGTGACTTGGAgg > 7:140974/1‑149 (MQ=255) gTCTGTCCAGCGAGTCATTGTTCCAGTAGCTAGCGCTGTAACAAAAAACGCCCCGGTGATC‑TCGGGGCG‑TTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTATGCGCAACCCGCTTGGTTGTGGTGGCCAAGTGGGTGACTTGGAg < 5:312018/148‑1 (MQ=255) tCCAGCGAGTCATTGTTCCAGTAGCTAGCGCTGTAACAAAAAACGCCCCGGTGATC‑TCGGGGCG‑TTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTATGCGCAACCCGCTTGGTTGTGGTGGCCAAGTGGGTGACTTGGAGGTGaaa < 7:259765/149‑1 (MQ=255) cGAGTCATTGTTCCAGTAGCTAGCGCTGTAACAAAAAACGCCCCGGTGATC‑TCGGGGCG‑TTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTATGCGCAACCCGCTTGGTTGTGGTGGCCAAGTGGGTGACTTGGAGGTGAAAGTCct < 8:67052/149‑1 (MQ=255) aGTCATTGTTCCAGTAGCTAGCGCTGTAACAAAAAACGCCCCGGTGATC‑TCGGGGCG‑TTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTATGCGCAACCCGCTTGGTTGTGGTGGCCAAGTGGGTGACTTGGAGGTGAAAGTCctct < 2:241623/149‑1 (MQ=255) gTCATTGTTCCAGTAGCTAGCGCTGTAACAAAAAACGCCCCGGTGATC‑TCGGGGCG‑TTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTATGCGCAACCCGCTTGGTTGTGGTGGCCAAGTGGGTGACTTGGAGGTGAAAGTCCTCTa < 7:296111/149‑1 (MQ=255) aTTGTTCCAGTAGCTAGCGCTGTAACAAAAAACGCCCCGGTGATC‑TCGGGGCG‑TTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTATGCGCAACCCGCTTGGTTgtggtg < 6:100928/112‑1 (MQ=255) aTTGTTCCAGTAGCTAGCGCTGTAACAAAAAACGCCCCGGTGATC‑TCGGGGCG‑TTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTATGCGCAACCCGCTTGGTTgtggtg > 5:100928/1‑112 (MQ=255) aTTGTTCCAGTAGCTAGCGCTGTAACAAAAAACGCCCCGGTGATC‑TCGGGGCG‑TTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTATGCGCAACCCGCTTGGTTGTGGTGGc > 7:184367/1‑114 (MQ=255) aTTGTTCCAGTAGCTAGCGCTGTAACAAAAAACGCCCCGGTGATC‑TCGGGGCG‑TTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTATGCGCAACCCGCTTGGTTGTGGTGGc < 8:184367/114‑1 (MQ=255) aTTGTTCCAGTAGCTAGCGCTGTAACAAAAAACGCCCCGGTGATC‑TCGGGGCG‑TTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTATGCGCAACCCGCTTGGTTGTGGTGGCCAAGTGGGTGACTTGGAGGTGAAAGTCCTCTaca > 1:286086/1‑148 (MQ=255) ttCCAGTAGCTAGCACTGTAACAAAAAACGCCCCGGTGATC‑TCGGGGCG‑TTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTATGCGCAACCCGCTTGGTTGTGGTGGCCAAGTGGGTGAc > 3:148725/1‑122 (MQ=255) ttCCAGTAGCTAGCACTGTAACAAAAAACGCCCCGGTGATC‑TCGGGGCG‑TTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTATGCGCAACCCGCTTGGTTGTGGTGGCCAAGTGGGTGAc < 4:148725/122‑1 (MQ=255) tagctagcGCTGTAACAAAAAACGCCCCGGTGATC‑TCGGGGCG‑TTTTTGTGTGCGCCATGCCTGgcgcac < 8:125125/70‑3 (MQ=255) tagctagcGCTGTAACAAAAAACGCCCCGGTGATC‑TCGGGGCG‑TTTTTGTGTGCGCCATGCCTGgcgcac > 7:125125/1‑68 (MQ=255) gctagcGCTGTAACAAAAAACGCCCCGGTGATC‑TCGGGGCG‑TTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTATGCGCAACCCGCTTGGTTGTGGTGGCCAAGTGGGTGACTTGCAGGTGAAAGTCCTCTACACACCCGGCAAgg < 1:28330/148‑1 (MQ=255) ctagcGCTGTAACAAAAAACGCCCCGGTGATC‑TCGGGGCG‑TTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTATGCGCAACCCGCTTGGTTGTGGTGGCCAAGTGGGTGACTTGGAGGTGAAAGTCCTCTACACACCCGGCATggg > 6:22042/1‑148 (MQ=255) ctagcGCTGTAACAAAAAACGCCCCGGTGATC‑TCGGGGCG‑TTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTATGCGCAACCCGCTTGGTTGTGGTGGCCAAGTGGGTGACTTGGAGGTGAAAGTCCTCTACACACCCGGCAAggg > 6:115909/1‑148 (MQ=255) gcgcTGTAACAAAAAACGCCCCGGTGATC‑TCGGGGCG‑TTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTATGCGCAACCCGCTTGGTTGTGGTGGCCAAGTGGGTGACTTGGAGGTGAAAGTCCTCTACACACCCGGCAAGGGGAAg < 2:211069/149‑1 (MQ=255) gcTGTAACAAAAAACGCCCCGGTGATC‑TCGGGGCG‑TTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTATGCGCAACCCGCTTGGTTGTGGTGGCCAAGTGGGTGACTTGGAGGTGAAAGTCCTCTACACACCCGGCAAGGGGAAgtg > 1:227828/1‑149 (MQ=255) gcacacaaaaaCGCCCC‑GAGATCACCGGGGCGTTTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTATGCGCAACCCGCTTGGTTGTGGTGGCCAAGTGGGTGACTTGGAGGTGAAAGTCCTCTACACACCCGGCAAGGGGAAgtgt > 6:119568/7‑148 (MQ=11) tAACAAAAAACGCCCCGGTGATC‑TCGGGGCG‑TTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTATGCGCAACCCGCTTGGTTGTGGTGGCCAAGTGGGTGACTTGGAGGTGAAAGTCCTCTACACACCCGGCAAGGGGAAGTGtt < 8:219853/147‑1 (MQ=255) aaaaaaCGCCCCGGTGATC‑TCGGGGCG‑TTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTATGCGCAACCCGCTTGGTTGTGGTGGCCAAGTGGGTGACTTGGAGGTGAAAGTCCTCTACACACCCGGCAAGGGGAAGTGTTAGCCg > 3:123660/1‑148 (MQ=255) aaaaaCGCCCC‑GAGATCACCGGGGCGTTTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTATGCGCAACCCGCTTGGTTGTGGTGGCCAAGTGGGTGACTTGGAGGTGAAAGTCCTCTACACACCCGGCAAGGGGAAGTGTTAGCCg > 5:80822/1‑148 (MQ=11) aaaaaCGCCCC‑GAGATCACCGGGGCG‑TTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTATGCGCAACCCGCTTGGTTGTGGTGGc > 6:247847/1‑87 (MQ=14) aaaaaCGCCCC‑GAGATCACCGGGGCG‑TTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTATGCGCAACCCGCTTGGTTGTGGTGGc < 5:247847/87‑1 (MQ=14) aaaaaCGCCCC‑GAGATCACCGGGGCG‑TTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTATGCGCAACCCGCTTGGTTGTGGTGGCCAAGTGGGTGACTTGGAGGTGAAAGTCCTCTACACAccc < 2:14969/126‑1 (MQ=11) aaaaaCGCCCC‑GAGATCACCGGGGCG‑TTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTATGCGCAACCCGCTTGGTTGTGGTGGCCAAGTGGGTGACTTGGAGGTGAAAGTCCTCTACACAccc > 1:14969/1‑126 (MQ=11) cGCCCCGGTGATC‑TCGGGGCG‑TTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTATGCGCAACCCGCTTGGTTGTGGTGGCCAAGTGGGTGACTTGGAGGTGAAAGTCCTCTACACACCCGGCAAGGGGAAGTGTTAGCCGGAGGCaa < 8:140974/149‑1 (MQ=255) cGCCCCGGTGATC‑TCGGGGCG‑TTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTATGCGCAACCCGCTTGGTTGTGGTGGCCAAGTGGGTGACTTGGAGGTGAAAGTCCTCTACACACCCGGCAAGGGGAAGTGTTAGCCGGAGGCaa < 2:227828/149‑1 (MQ=255) ccGGTGATC‑TCGGGGCG‑TTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTATGCGCAACCCGCTTGGTTGTGGTGGCCAAGTGGGTGACTTGGAGGTGAAAGTCCTCTACACACCCGGCaa > 1:52020/1‑122 (MQ=255) ccGGTGATC‑TCGGGGCG‑TTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTATGCGCAACCCGCTTGGTTGTGGTGGCCAAGTGGGTGACTTGGAGGTGAAAGTCCTCTACACACCCGGCaa < 2:52020/122‑1 (MQ=255) ccGGTGATC‑TCGGGGCG‑TTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTATGCGCAACCCGCTTGGTTGTGGTGGCCAAGTGGGTGACTTGGAGGTGAAAGTCCTCTACACACCCGGCAAGGGGAAGTGTTAGCCGGAGGCAAGGgt > 1:274132/1‑149 (MQ=40) | TGTTGGGCTGGAGATCGGCCTTACCCGTGAACGGGTGCGGCAAATCCAGGTGGAAGGGCTCAAGCGCTTGCGCGAGATCCTTGAAAAGAATGGTCTGTCCAGCGAGTCATTGTTCCAGTAGCTAGCGCTGTAACAAAAAACGCCCCGGTGATC‑TCGGGGCG‑TTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTATGCGCAACCCGCTTGGTTGTGGTGGCCAAGTGGGTGACTTGGAGGTGAAAGTCCTCTACACACCCGGCAAGGGGAAGTGTTAGCCGGAGGCAAGGGT > NC_002947/1819643‑1819935 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |