| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 197,032 | C→T | 5.5% | T846T (ACC→ACT) | PP_0168 → | putative surface adhesion protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 197,032 | 0 | C | T | 5.5% | 764.8 / 21.0 | 271 | T846T (ACC→ACT) | PP_0168 | putative surface adhesion protein |
| Reads supporting (aligned to +/- strand): ref base C (124/132); new base T (8/7); total (132/139) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.94e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.28e-01 | |||||||||||
Only 100 of 275 total aligned reads displayed.
CAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACC‑‑CCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGC‑GGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAA > NC_002947/196913‑197180 | gACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACC‑‑CCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGC‑g < 8:272564/149‑1 (MQ=32) aCGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACC‑‑CCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGC‑gg < 4:7256/149‑1 (MQ=32) gCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACC‑‑CCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGC‑GGt > 4:280462/1‑148 (MQ=32) tGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACC‑‑CCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGC‑GGTAATTTc < 6:233643/149‑1 (MQ=35) tGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACC‑‑CCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGC‑GGTAATTTc < 3:49936/149‑1 (MQ=35) accgTGACCCTGTACAACGGCCAAACCATTAGCGTTGAAGCCGTCAAGACCCAGGGCAGCGTCGATTTCCAGACC‑‑CCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCGCAGGC‑GGTAATTTCGa < 4:326914/146‑1 (MQ=1) aCAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACC‑‑CCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGC‑GGTAATTTc > 6:244806/1‑147 (MQ=34) aCAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACC‑‑CCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGC‑GGTAATTTCGa < 7:194890/149‑1 (MQ=34) aCAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACC‑‑CCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGC‑GGTAATTTCGa < 5:259626/149‑1 (MQ=34) aGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACC‑‑CCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGC‑GGTAATTTCGAg > 4:16527/1‑148 (MQ=32) aGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACC‑‑CCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGC‑GGTAATTTCGAg > 8:4977/1‑148 (MQ=32) aCCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGTCC‑‑CCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGC‑GGTAATTTCGAGCAAc < 6:57717/148‑1 (MQ=17) ccTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACC‑‑CCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGC‑g < 1:15503/131‑1 (MQ=32) ccTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACC‑‑CCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGC‑GGTAATTTCGAGCAACTGa > 2:37405/1‑149 (MQ=32) tCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACC‑‑CCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGC‑GGTAATTTCGAGCAACTGAccc < 5:108335/148‑1 (MQ=32) cAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCAGACGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGC‑GGTAATTTCGAGCAACTGAcacc > 1:271449/1‑149 (MQ=11) cAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACC‑‑CCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGC‑GGTAATTTCGAGCAACTGACCCCg > 1:203818/1‑148 (MQ=32) cAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACC‑‑CCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGC‑GGTAATTTCGAGCAACTGACCCCg > 4:181589/1‑148 (MQ=32) cAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACC‑‑CCGGCGAATGACGTCTACAACAAAGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGC‑GGTAATTTc > 1:334020/1‑133 (MQ=17) aaCGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACC‑‑CCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGC‑GGTAATTTCGa < 3:277589/134‑1 (MQ=32) ggCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACC‑‑CCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGC‑GGTAATTTCGAGCAACTGACCCCGAATcc < 6:205496/149‑1 (MQ=34) gCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACC‑‑CCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACAATCGAGAACGCCACAGGC‑GGTAATTTCGAGCAACTGACCCCGAATcc > 2:221127/1‑148 (MQ=21) gCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACA‑‑CCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGC‑GGTAATTTCGAGCAACTGACCCCGAATcc > 1:319635/1‑148 (MQ=21) cAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACC‑‑CCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGC‑GGTAATTTc < 6:260491/126‑1 (MQ=32) cAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACC‑‑CCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGC‑GGTAATTTCGAGCAACTGACCCCGAAt < 3:5279/144‑1 (MQ=32) cAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACC‑‑CCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGC‑GGTAATTTCAAGAAACTGACCCCGaaacaca > 4:5279/1‑143 (MQ=12) aaaCCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACC‑‑CCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGC‑GGTAATTTCGAGCAACTGACCCCGAATcc > 5:163790/1‑145 (MQ=34) aaaCCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACC‑‑CCGGCGAATGACGTCTACAACAACGGTTCGACCGACAGCGTCACCATCGAGAACGCCAAAGGC‑GGTAATTTCGAGCAACTGACCCCGAATCAGAcc > 6:37008/1‑149 (MQ=255) aCCATTACCGTTGAAGCCGTCAAGACCCAGGGCAGCGTCGATTTCCAGACC‑‑CCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGC‑GGTAATTTCGAGCAACTGACCCCGAATCCGAcccc < 2:23442/149‑1 (MQ=37) aCCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACC‑‑CCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGC‑GGTAATTTCGAGCAACTGACCCCGAATCCGAcccc < 6:143062/149‑1 (MQ=37) ttACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACC‑‑CCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGC‑GGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCt > 7:264814/1‑149 (MQ=37) ttGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGCCC‑‑CCGCCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACACGC‑TGTAATTTCGAGCAACTGACCCCGAATCCGCCCCCGGCTCAGAcc > 7:113542/1‑149 (MQ=11) aaGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACC‑‑CCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGC‑GGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCAc < 3:280462/148‑1 (MQ=37) cGGCAAGACCCAGGGCAGCGTCGATTTCCAGACC‑‑CCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGC‑GGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCa < 6:282234/138‑1 (MQ=37) cGGCAAGACCCAGGGCAGCGTCGATTTCCAGACC‑‑CCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGC‑GGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATc < 1:221127/148‑1 (MQ=37) ggCAAGACCCAGGGCAGCGTCGATTTCCAGCCC‑‑CCGGCGAATGACGGCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGC‑GGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCaa > 3:32218/1‑149 (MQ=255) ggCAAGACCCAGGGCAGCGTCGATTTCCAGACC‑‑CCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGC‑GGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCaa < 6:160755/149‑1 (MQ=37) gCAAGACCCAGGGCAGCGTCGATTTCCAGACC‑‑CCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGC‑GGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAAc < 8:264814/149‑1 (MQ=37) gCAAGACCCAGGGCAGCGTCGATTTCCAGACC‑‑CCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGC‑GGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAAc < 6:8860/149‑1 (MQ=37) gCAAGACCCAGGGCAGCGTCGATTTCCAGACC‑‑CCGACGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGC‑GGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAAc > 1:50684/1‑149 (MQ=37) gCAAGAACCAGGGCATCGTGGATTTACAGTCC‑‑CCGGCGAATGACGTCTACAACAACGGTTCGACCGTCATCGTCACCATCGACAACGCCAAAGGC‑GGTAATTTCGAGCAACTGACCCCGAATCCGACCCCTGCTCAGACCACGATCAAc < 1:137715/149‑1 (MQ=11) aaGACCCAGGGCAGCGTCGATTTCCAGACC‑‑CCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGC‑GGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGa < 5:275952/149‑1 (MQ=37) aaGACCCAGGGCAGCGTCGATTTCCAGACC‑‑CCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGC‑GGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGa < 7:165374/149‑1 (MQ=37) gACCCAGGGCAGCGTCGATTTCCAGACC‑‑CCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGC‑GGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACt < 7:31892/149‑1 (MQ=35) cccAGGGCAGCTTCGATTTCCTGACC‑‑CTGGCGAATGACGTCTACAACAACGGATCGACCGTCAGCGTCACCATCGTGTACGCCACAGGC‑GGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTc < 8:113542/148‑1 (MQ=11) ccAGGGCAGCGTCGATTTCCAGACC‑‑CCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGC‑GGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCgg > 3:21422/1‑149 (MQ=34) cAGGGCAGCGTCGATTTCCAGACC‑‑CCGGCGAATGACTGCTCCACCACCGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGC‑GGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGt < 8:300455/149‑1 (MQ=11) cAGGGCAGCGTCGATTTCCAGACC‑‑CCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGC‑GGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGt < 4:31788/149‑1 (MQ=34) aGGGCAGCGTCGATTTCCAGACC‑‑CCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGC‑GGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTc > 1:345524/1‑149 (MQ=34) aGGGCAGCGTCGATTTCCAGACC‑‑CCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGC‑GGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTc > 5:338435/1‑149 (MQ=34) gCAGCGTCGATTTCCAGACC‑‑CCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGC‑GGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGAt < 4:13154/149‑1 (MQ=35) gCAGCGTCGATTTCCAGACC‑‑CCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGC‑GGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGAt < 7:88373/149‑1 (MQ=35) gCAGCGTCGATTTCCAGACC‑‑CCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGC‑GGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGAt < 5:244806/149‑1 (MQ=35) aGCGTCGATTTCCAGACC‑‑CCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGATCGCCACAGGC‑GGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATGAACGACTCGGTCGATGc < 3:272069/149‑1 (MQ=255) gTCGATTTCCAGACC‑‑CCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGC‑GGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGccac < 2:330533/149‑1 (MQ=39) gTCGATTTCCAGACC‑‑CCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGC‑GGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGccac > 5:68894/1‑149 (MQ=39) tCGATTTCCAGACC‑‑CCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGC‑GGTAATTTCGa > 2:188373/1‑88 (MQ=33) tCGATTTCCAGACC‑‑CCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGC‑GGTAATTTCGa < 1:188373/88‑1 (MQ=33) gacttCCAGACC‑‑CCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGC‑GGTAATTTCGAGCAACTGACCCCGAACCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCcaccac > 3:139754/4‑149 (MQ=255) gATTTCCAGACC‑‑CCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGC‑GGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGccacca < 6:296415/148‑1 (MQ=39) gATTTCCAGACC‑‑CCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGC‑GGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCcaccac < 1:122022/149‑1 (MQ=39) aTTTCCAGACC‑‑CCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGC‑GGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCaccacc > 4:33283/1‑149 (MQ=39) tttCCAGACC‑‑CCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGC‑GGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACcg < 5:63810/149‑1 (MQ=39) cAGACC‑‑CCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGC‑GGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGAc < 3:195658/149‑1 (MQ=39) cAGACC‑‑CCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGC‑GGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGAc < 7:127229/149‑1 (MQ=39) aCC‑‑CCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGC‑GGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCt < 7:222605/149‑1 (MQ=39) c‑‑ccGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGC‑GGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGAt < 2:276587/130‑1 (MQ=35) c‑‑ccGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGC‑GGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGAt > 1:276587/1‑130 (MQ=35) ccGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGC‑GGTAATTTCGAGCAACTGACCCCGAACCCGACCCCGGCTCAGACACAGATCAACGACTCGGTCGATTCCACCACCGCGACCCTGAc > 5:96382/1‑149 (MQ=11) cGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGC‑GGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCAc > 6:68847/1‑109 (MQ=35) cGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGC‑GGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACg < 3:176529/149‑1 (MQ=39) gAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACACGC‑GGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGa < 7:324457/149‑1 (MQ=38) aTGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGC‑GGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGc < 8:154661/149‑1 (MQ=37) tGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGC‑GGTAATTTCGAGCAACTGACCCCGAACCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGcc > 7:15461/1‑149 (MQ=21) gACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGC‑GGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGccc > 4:218004/1‑149 (MQ=37) aCGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGC‑GGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCg > 5:114563/1‑149 (MQ=37) caacaaCGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGC‑GGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGAc < 8:323994/132‑1 (MQ=37) caacaaCGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGC‑GGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGt > 4:268801/1‑147 (MQ=37) caacaaCGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGC‑GGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCa > 1:105605/1‑149 (MQ=37) caacaaCGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGC‑GGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCa > 6:120314/1‑149 (MQ=37) caacaaCGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGC‑GGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCa > 8:238947/1‑149 (MQ=37) aacaacGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGC‑GGTAATTTCGAGCAACTGAcccc < 2:179705/68‑1 (MQ=35) aacaacGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGC‑GGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCTGTCg < 1:270397/144‑1 (MQ=37) aacaacGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGC‑GGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCAc < 2:149653/149‑1 (MQ=37) aacaacGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGC‑GGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCAc > 7:60515/1‑149 (MQ=37) aacaacGGTTCGACCCTCAGCGTCACCATCGAGAACGCCACAGGC‑GGTAATTTCGAGCAACAGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGCTGCCACCACCGCGCCCCTGACGGCGCTCCCGTCGGTccc > 4:189337/1‑147 (MQ=11) caacGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGC‑GGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGAc < 5:122392/129‑1 (MQ=38) aacGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGC‑GGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGa > 3:112047/1‑98 (MQ=33) aacGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGC‑GGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGCCCCTGACGGCGAGCCCGTCGGTCACCg > 4:211674/1‑148 (MQ=37) acGGTTCGACCGTCAGCCTCACCATCGAGAACGCCACAGGC‑GGTAATTTCGAGCAACTGACCACGAATCCGACCCCTGCTCATACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGaa < 8:130406/149‑1 (MQ=255) cGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGC‑GGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCTGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAg < 3:81851/149‑1 (MQ=37) cGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGC‑GGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAg > 4:198351/1‑149 (MQ=37) ggTTCGACCGTCAGCGTCACCATCGAGAACTCCACAGGC‑GGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGTCCGTCGGTCACCGAAgg < 3:164349/149‑1 (MQ=255) ttCGACTGTCAGCGTCACCATCGAGAACACCACAGGC‑GGTAATTTCGAGCAACTGACCCCGAACCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAggcg < 8:206044/149‑1 (MQ=255) gACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGGTAATTTCGAGCAACTGACCCCGAACCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAggcggc > 1:231088/1‑149 (MQ=255) gACCGTCAGCGTCACCATCGAGAACGCCACAGGC‑GGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAggcggc < 2:271044/148‑1 (MQ=37) gACCGTCAGCGTCACCATCGAGAACGCCACAGGC‑GGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAggcggc < 5:219873/148‑1 (MQ=37) gACCGTCAGCGTCACCATCGAGAACGCCACAGGC‑GGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGgcggcg < 3:302436/149‑1 (MQ=37) cGTCAGCGTCACCATCGAGAACGCCACAGGC‑GGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGtga > 5:291906/1‑147 (MQ=25) cGTCAGCGTCACCATCGAGAACGCCACAGGC‑GGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTaa > 7:249151/1‑149 (MQ=38) | CAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACC‑‑CCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGC‑GGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAA > NC_002947/196913‑197180 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |