Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_002947 1,938,839 C→T 6.2% E73K (GAG→AAG)  PP_1738 ← hypothetical protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0029471,938,8390CT 6.2% 189.0 / 2.1 64E73K (GAG→AAG) PP_1738hypothetical protein
Reads supporting (aligned to +/- strand):  ref base C (33/27);  new base T (2/2);  total (35/29)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.87e-01

AACAGCTTTTTCAGGTATTCATTGATGCTGCTGCTGTAGGGCGCGCCGGTGCCGGCGATGATGAAGATCAGCGGCGCTTCGTGATCCTGGCGGGCCAGGCGGTACTTGAGCTTCTTCACTGCCCAGAAGTTGTCGGGCAACGTGAACTCGCGCTCCGGGCGCAAGTTCAGGCTGTAGTCGGACTGAGTGATTTCATCGTCGCTGGGCAGCTCAGGGCGCTTGTCCGGCGGCGTGGTGGCGATGGTGGCCTCGAACGGGTTGGTAAGAGGGTAGCCATAGCTGGCAGCGT  >  NC_002947/1938691‑1938979
                                                                                                                                                    |                                                                                                                                             
aaCAGCTTTTTCAGGTATTCATTGATGCTGCTGCTGTAGGGCGCGCCGGTGCCGGCGATGATGAAGATCAGCGGCGCTTCGTGATCCTGGCGGGCCAGGCGGTACTTGAGCTTCTTCACTGCCCAGAAGTTGTCGGGCAACGTGAACTc                                                                                                                                               >  6:213188/1‑149 (MQ=255)
 aCAGCTTTTTCAGGTATTCATTGATGCTGCTGCTGTAGGGCGCGCCGGTGCCGGCGATGATGAAGATCAGCGGCGCTTCGTGATCCTGGCGGGCCAGGCGGTACTTGAGCTTCTTCACTGCCCAGAAGTTGTCGGGCAACGTGAACTcg                                                                                                                                              <  5:213188/149‑1 (MQ=255)
            aGGTATTCATTGATGCTGCTGCTGTAGGGCGCGCCGGTGCCGGCGATGATGAAGATCAGCGGCGCTTCGTGATCCTGGCGGGCCAGGCGGTACTTGAGCTTCTTCACTGCCCAGAAGTTGTCGGGCAACGTGAACTCGCGCTCCGGgcg                                                                                                                                   <  7:57819/149‑1 (MQ=255)
            aGGTATTCATTGATGCTGCTGCTGTAGGGCGCGCCGGTGCCGGCGATGATGAAGATCAGCGGCGCTTCGTGATCCTGGCGGGCCAGGCGGTACTTGAGCTTCTTCACTGCCCAGAAGTTGTCGGGCAACGTGAACTCGCGCTCCGGgc                                                                                                                                    <  4:128626/148‑1 (MQ=255)
             ggTATTCATTGATGCTGCTGCTGTAGGGCGCGCCGGTGCCGGCGATGATGAAGATCAGCGGCGCTTCGTGATCCTGGCGGGCCAGGCGGTACTTGAGCTTCTTCACTGCCCAGAAGTTGTCGGGCAACGTGAACTCGCGCTCCGGgcg                                                                                                                                   >  3:207004/1‑148 (MQ=255)
              gTATTCATTGATGCTGCTGCTGTAGGGCGCGCCGGTGCCGGCGATGATGAAGATCAGCGGCGCTTCGTGATCCTGGCGGGCCAGGCGGTACTTGAGCTTCTTCACTGCCCAGAAGTTGTCGGGCAACGTGAACTCGCGCTCCGGgcgc                                                                                                                                  >  2:89555/1‑148 (MQ=255)
                aTTCATTGATGCTGCTGCTGTAGGGCGCGCCGGTGCCGGCGATGATGAAGATCAGCGGCGCTTCGTGATCCTGGCGGGCCAGGCGGTACTTGAGCTTCTTCACTGCCCAGAAGTTGTCGGGCAACGTGAACTTGCGCCCGGAGCGCGAg                                                                                                                               >  1:130928/1‑149 (MQ=255)
                aTTCATTGATGCTGCTGCTGTAGGGCGCGCCGGTGCCGGCGATGATGAAGATCAGCGGCGCTTCGTGATCCTGGCGGGCCAGGCGGTACTTGAGCTTCTTCACTGCCCAGAAGTTGTCGGGCAACGTGAACTCgcgc                                                                                                                                           <  3:309260/137‑1 (MQ=255)
                aTTCATTGATGCTGCTGCTGTAGGGCGCGCCGGTGCCGGCGATGATGAAGATCAGCGGCGCTTCGTGATCCTGGCGGGCCAGGCGGTACTTGAGCTTCTTCACTGCCCAGAAGTTGTCGGGCAACGTGAACTCgcgc                                                                                                                                           >  4:309260/1‑137 (MQ=255)
                    aTTGATGCTGCTGCTGTAGGGCGCGCCGGTGCCGGCGATGATGAAGATCAGCGGCGCTTCGTGATCCTGGCGGGCCAGGCGGTACTTGAGCTTCTTCACTGCCCAGAAGTTGTCGGGCAACGTGAACTTGCGCCCGGAGCGCGAGTTCa                                                                                                                           <  2:130928/149‑1 (MQ=255)
                    aTTGATGCTGCTGCTGTAGGGCGCGCCGGTGCCGGCGATGATGAAGATCAGCGGCGCTTCGTGATCCTGGCGGGCCAGGCGGTACTTGAGCTTCTTCACTGCCCAGAAGTTGTCGGGCAACGTGAACTCGCGCTCCGGGCGCAAGtt                                                                                                                             >  6:344334/1‑147 (MQ=255)
                             gctgctgTAGGGCGCGCCGGTGCCGGCGATGATGAAGATCAGCGGCGCTTCGTGATCCTGGCGGGCCAGGCGGTACTTGAGCTTCTTCACTGCCCAGAAGTTGTCGGGCAACGTGAACTCGCGCTCCGGGCGCAAGTTCAGGCTGTAGt                                                                                                                  >  5:92682/1‑149 (MQ=255)
                              ctgctgTAGGGCGCGCCGGTGCCGGCGATGATGAAGATCAGCGGCGCTTCGTGATCCTGGCGGGCCAGGCGGTACTTGAGCTTCTTCACTGCCCAGAAGTTGTCGGGCAACGTGAACTCGCGCTCCGGGCGCAAGTTCAGGCTGTAGTc                                                                                                                 <  2:332907/149‑1 (MQ=255)
                                 ctgTAGGGCGCGCCGGTGCCGGCGATGATGAAGATCAGCGGCGCTTCGTGATCCTGGCGGGCCAGGCGGTACTTGAGCTTCTTCACTGCCCAGAAGTTGTCGGGCAACGTGAACTCGCGCTCCGGGCGCAAGTTCAGGCTGTAGTCgg                                                                                                               >  3:68026/1‑148 (MQ=255)
                                    tAGGGCGCGCCGGTGCCGGCGATGATGAAGATCAGCGGCGCTTCGTGATCCTGGCGGGCCAGGCGGTACTTGAGCTTCTTCACTGCCCAGAAGTTGTCGGGCAACGTGAACTCGCGCTCCGGGCGCAAGTTCAGGCTGTAGTCGGACt                                                                                                            <  6:92682/148‑1 (MQ=255)
                                      gggCGCGCCGGTGCCGGCGATGATGAAGATCAGCGGCGCTTCGTGATCCTGGCGGGCCAGGCGGTACTTGAGCTTCTTCACTGCCCAGAAGTTGTCGGGCAACGTGAACTCGCGCTCCGGGCGCAAGTTCAGGCTGTAGTCGGACTGa                                                                                                          <  1:89555/148‑1 (MQ=255)
                                      gggCGCGCCGGTGCCGGCGATGATGAAGATCAGCGGCGCTTCGTGATCCTGGCGGGCCAGGCGGTACTTGAGCTTCTTCACTGCCCAGAAGTTGTCGGGCAACGTGAACTCGCGCTCCGGGCGCAAGTTCAGGCTGTAGTCGGACTGAg                                                                                                         >  4:49318/1‑149 (MQ=255)
                                      gggCGCGCCGGTGCCGGCGATGATGAAGATCAGCGGCGCTTCGTGATCCTGGCGGGCCAGGCGGTACTTGAGCTTCTTCACTGCCCAGAAGTTGTCGGGCAACGTGAACTCGCGCTCCGGGCGCAAGTTCAGGCTGTAGTCGGACTGAg                                                                                                         >  7:119423/1‑149 (MQ=255)
                                           cgcCGGTGCCGGCGATGATGAAGATCAGCGGCGCTTCGTGATCCTGGCGGGCCAGGCGGTACTTGAGCTTCTTCACTGCCCAGAAGTTGTCGGGCAACGTGAACTCGCGCTCCGGGCGCAAGTTCAGGCTGTAGTCGGACTGAGTGAtt                                                                                                    <  3:49318/149‑1 (MQ=255)
                                              cGGTGCCGGCGATGATGAAGATCAGCGGCGCTTCGTGATCCTGGCGGGCCAGGCGGTACTTGAGCTTCTTCACTGCCCAGAAGTTGTCGGGCAACGTGAACTCGCGCTCCGGGCGCAAGTTCAGGCTGTAGTCGGACTGAGTGATTTCa                                                                                                 >  7:224867/1‑149 (MQ=255)
                                                gTGCCGGCGATGATGAAGATCAGCGGCGCTTCGTGATCCTGGCGGGCCAGGCGGTACTTGAGCTTCTTCACTGCCCAGAAGTTGTCGGGCAACGTGAACTCGCGCTCCGGGCGCAAGTTCAGGCTGTAGTCGGACTGAGTGATTTCAtc                                                                                               <  8:119423/149‑1 (MQ=255)
                                                   ccGGCGATGATGAAGATCAGCGGCGCTTCGTGATCCTGGCGGGCCAGGCGGTACTTGAGCTTCTTCACTGCCCAGAAGTTGTCGGGCAACGTGAACTCGCGCTCCGGGCGCAAGTTCAGGCTGTAGTCGGACTGAGTGATTTCAtcttc                                                                                            >  8:311480/1‑149 (MQ=255)
                                                    cGGCGATGATGAAGATCAGCGGCGCTTCGTGATCCTGGCGGGCCAGGCGGTACTTGAGCTTCTTCACTGCCCAGAAGTTGTCGGGCAACGTGAACTCGCGCTCCGGGCGCAAGTTCAGGCTGTAGTCGGACTGAGTGATTTCAtcgtcg                                                                                           >  5:103042/1‑149 (MQ=255)
                                                         atgatgAAGATCAGCGGCGCTTCGTGATCCTGGCGGGCCAGGAGGTACTTGAGCTTCTTCACTGCCCAGAAGTTGTCGGGCAACGTGAACTCGCGCTCCGGGCGCAAGTTCAGGCTGTAGTCGGACTGAGTGATTTCATCGTCGCTggg                                                                                     <  4:68026/149‑1 (MQ=255)
                                                          tgatgaAGATCAGCGGCGCTTCGTGATCCTGGCGGGCCAGGCGGTACTTGAGCTTCTTCACTGCCCAGAAGTTGTCGGGCAACGTGAACTCGCGCTCCGGGCGCAAGTTCAGGCTGTAGTCGGACTGAGTGATTTCATCGTCGCTggg                                                                                     >  3:115633/1‑148 (MQ=255)
                                                            atgaAGATCAGCGGCGCTTCGTGATCCTGGCGGGCCAGGCGGTACTTGAGCTTCTTCACTGCCCAGAAGTTGTCGGGCAACGTGAACTCGCGCTCCGGGCGCAAGTTCAGGCTGTAGTCGGACTGAGTGATTTCATCGTCGCTGGGCAg                                                                                  <  5:344334/149‑1 (MQ=255)
                                                              gaAGATCAGCGGCGCTTCGTGATCCTGGCGGGCCAGGCGGTACTTGAGCTTCTTCACTGCCCAGAAGTTGTCGGGCAACGTGAACTCGCGCTCCGGGCGCAAGTTCAGGCTGTAGTCGGACTGAGTGATTTCATCGTCGCTGGGCAGCt                                                                                >  6:138666/1‑149 (MQ=255)
                                                                 gATCAGCGGCGCTTCGTGATACTGGAGGGCCACGCGGTACTTGAGCTTCTTCACTGCACAGAAGTTGTCGGGAAACGTGAACTCGCGCTCCGGGCTCAAGTTCAGGATCTAGTCGGACTGAGAGATTTCATCGTAGCTGCGCAGCTCAg                                                                             >  2:1701/1‑149 (MQ=255)
                                                                   tCAGCGGCGCTTCGTGATCCTGGCGGGCCAGGCGGTACTTGAGCTTCTTCACTGCCCAGAAGTTGTCGGGCAACGTGAACTCGCGCTCCGGGCGCAAGTTCAGGCTGTAGTCGGACTGAGTGATTTCATCGTCGCTGGGCAGCGCAggg                                                                           <  7:311480/149‑1 (MQ=255)
                                                                    cAGCGGCGCTTCGTGATCCTGGCGGGCCAGGCGGTACTTGAGCTTCTTCACTGCCCAGAAGTTGTCGGGCAACGTGAACTCGCGCTCCGGGCGCAAGTTCAGGCTGTAGTCGGACTGAGTGATTTCATCGTCGCTGGGCAGCTCAggg                                                                           <  4:207004/148‑1 (MQ=255)
                                                                    cAGCGGCGCTTCGTGATCCTGGCGGGCCAGGCGGTACTTGAGCTTCTTCACTGCCCAGAAGTTGTCGGGCAACGTGAACTCGCGATCCGGGCGCAAGTTCAGGCTGTAGTCGGACTGAGTGATTTCATCGTCGCTGGGCAGCTCAGGgc                                                                          >  8:25115/1‑149 (MQ=255)
                                                                      gcggcgCTTCGTGATCCTGGCGGGCCAGGCGGTACTTGAGCTTCTTCACTGCCCAGAAGTTGTCGGGCAACGTGAACTCGCGCTCCGGGCGCAAGTTCAGGCTGTAGTCGGACTGAGTGATTTCATCGTCGCTGGGCAGCTCAGGgcgc                                                                        <  5:138666/149‑1 (MQ=255)
                                                                           gcTTCGTGATCCTGGCGGGCCAGGCGGTACTTGAGCTTCTTCACTGCCCAGAAGTTGTCGGGCAACGTGAACTCGCGCTCCGGGCGCAAGTTCAGGCTGTAGTCGGACTGAGTGATTTCATCGTCGCTGGGCAGCTCAGGGCGCTTGTc                                                                   >  6:169315/1‑149 (MQ=255)
                                                                             ttCGTGATCCTGGCGGGCCAGGCGGTACTTGAGCTTCTTCACTGCCCAGAAGTTGTCGGGCAACGTGAACTCGCGCTCCGGGCGCAAGTTCAGGCTGTAGTCGGACTGAGTGATTTCATCGTCGCTGGGCAGCTCAGGGCGCTTGTCcg                                                                 >  3:193600/1‑149 (MQ=255)
                                                                                 tGATCCTGGCGGGCCAGGCGGTACTTGAGCTTCTTCACTGCCCAGAAGTTGTCGGGCAACGTGAACTCGCGCTCCGGGCGCAAGTTCAGGCTGTAGTCGGACTGAGTGATTTCATCGTCGCTGGGCCGAGCAGGGCGCGTGTCgggcgg                                                             >  8:146788/1‑149 (MQ=255)
                                                                                      cTGGCGGGCCAGGCGGTACTTGAGCTTCTTCACTGCCCAGAAGTTGTCGGGCAACGTGAACTCGCGCTCCGGGCGCAAGTTCAGGCTGTAGTCGGACTGAGTGATTTCATCGTCGCTGGGCAGCTCAGGGCGCTTGTCCGGCGGCgtgg                                                        >  8:64955/1‑149 (MQ=255)
                                                                                       tGGCGGGCCAGGCGGTACTTGAGCTTCTTCACTGCCCAGAAGTTGTCGGGCAACGTGAACTCGCGCTCCGGGCGCAAGTTCAGGCTGTAGTCGGACTGAGTGATTTCATCGTCGCTGGGCAGCTCAGGGCGCTTGTCCGGCGGCgtggt                                                       >  4:267608/1‑149 (MQ=255)
                                                                                       tGGCGGGCCAGGCGGTACTTGAGCTTCTTCACTGCCCAGAAGTTGTCGGGCAACGTGAACTCGCGCTCCGGGCGCAAGTTCAGGCTGTAGTCGGACTGAGTGATTTCATCGTCGCTGGGCAGCTCAGGGCGCTTGTCCGGCGGCgtggt                                                       >  3:164190/1‑149 (MQ=255)
                                                                                             gCCAGGCGGTACTTGAGCTTCTTCACTGCCCAGAAGTTGTCGGGCAACGTGAACTCGCGCTCCGGGCGCAAGTTCAGGCTGTAGTCGGACTGAGTGATTTCATCGTCGCTGGGCAGCTCAGGGCGCTTGTCCGGCGGCGTGGTGGCGAt                                                 <  4:164190/149‑1 (MQ=255)
                                                                                                   cGGTACTTGAGCTTCTTCACTGCCCAGAAGTTGTCGGGCAACGTGAACTCGCGCTCCGGGCGCAAGTTCAGGCTGTAGTCGGACTGAGTGATTTCATCGTCGCTGGGCAGCTCAGGGCGCTTGTCCGGCGGCGTGGTGGCGATGGTGGc                                           >  4:250241/1‑149 (MQ=255)
                                                                                                       aCTTGAGCTTCTTCACTGCCCAGAAGTTGTCGGGCAACGTGAACTCGCGCTCCGGGCGCATGTTCAGGCTGTAGTCGGACTGAGTGATTTCATCGTCGCTGGGCAGCTCAGGGCGCTTGTCCGGCGGCGTGGTGGCGATGGTGGCCTc                                        >  4:262879/1‑148 (MQ=255)
                                                                                                           gAGCTTCTTCACTGCCCAGAAGTTGTCGGGCAACGTGAACTCGCGCTCCGGGCGCAAGTTCAGGCTGTAGTCGGACTGAGTGATTTCATCGTCGCTGGGCAGCTCAGGGCGCTTGTCCGGCGGCGTGGTGGCGATGGTGGCCTCGaa                                     <  7:64955/147‑1 (MQ=255)
                                                                                                             gCTTCTTCACTGCCCAGAAGTTGTCGGGCAACGTGAACTCGCGCTCCGGGCGCAAGTTCAGGCTGTAGTCGGACTGAGTGATTTCATCGTCGCTGGGCAGCTCAGGGCGCTTGTCCGGCGGCGTGGTGGCGATGGTGGCCTCGAACggg                                 <  2:336479/149‑1 (MQ=255)
                                                                                                               ttcttcACTGCCCAGAAGTTGTCGGGCAACGTGAACTCGCGCTCCGGGCGCAAGTTCAGGCTGTAGTCGGACTGAGTGATTTCATCGTCGCTGGGCAGCTCAGGGCGCTTGTCCGGCGGCGTGGTGGCGATGGTGGCCTCGAACGGGtt                               >  2:275096/1‑149 (MQ=255)
                                                                                                                 cttcACTGCCCAGAAGTTGTCGGGCAACGTGAACTCGCGCTCCGGGCGCAAGTTCAGGCTGTAGTCGGACTGAGTGATTTCATCGTCGCTGGGCAGCTCAGGGCGCTTGTCCGGCGGCGTGGTGGCGATGGTGGCCTCGAACGGGTTg                              <  4:193600/148‑1 (MQ=255)
                                                                                                                 cttcACTGCCCAGAAGTTGTCGGGCAACGTGAACTCGCGCTCCGGGCGCAAGTTCAGGCTGTAGTCGGACTGAGTGATTTCATCGTCGCTGGGCAGCTCAGGGCGCTTGTCCGGCGGCGTGGTGGCGATGGTGGCCTCGAACGGGTTg                              <  3:250241/148‑1 (MQ=255)
                                                                                                                       tGCCCAGAAGTTGTCGGGCAACGTGAACTCGCGCTCCGGGCGCAAGTTCAGGCTGTAGTCGGACTGAGTGATTTCATCGTCGCTGGGCAGCTCAGGGCGCTTGTCCGGCGGCGTGGTGGCGATGGTGGCCTCGAACGGGTTGGTAagag                       >  2:317035/1‑149 (MQ=255)
                                                                                                                         cccAGAAGTTGTCGGGCAACGTGAACTCGCGCTCCGGGCGCAAGTTCAGGCTGTAGTCGGACTGAGTGATTTCATCGTCGCTGGGCAGCTCAGGGCGCTTGTCCGGCGGCGTGGTGGCGATGGTGGCCTCGAACGGGTTGGTAAGAgg                      <  8:224867/148‑1 (MQ=255)
                                                                                                                             gAAGTTGTCGGGCAACGTGAACTCGCGCTCCGGGCGCAAGTTCAGGCTGTAGTCGGACTGAGTGATTTCATCGTCGCTGGGCAGCTCAGGGCGCTTGTCCGGCGGCGTGGTGGCGATGGTGGCCTCGAACGGGTTGGTAAGAGGGTAGc                 <  1:317035/149‑1 (MQ=255)
                                                                                                                                 ttGTCGGGCAACGTGAACTCGCGCTCCGGGCGCAAGTTCAGGCTGTAGTCGGACTGAGTGATTTCATCGTCGCTGGGCAGCTCAGGGCGCTTGTCCGGCGGCGTGGTGGCGATGGTGGCCTCGAACGGGTTGGTAAGAgg                      <  8:168476/140‑1 (MQ=255)
                                                                                                                                 ttGTCGGGCAACGTGAACTCGCGCTCCGGGCGCAAGTTCAGGCTGTAGTCGGACTGAGTGATTTCATCGTCGCTGGGCAGCTCAGGGCGCTTGTCCGGCGGCGTGGTGGCGATGGTGGCCTCGAACGGGTTGGTAAGAgg                      >  7:168476/1‑140 (MQ=255)
                                                                                                                                   gTCGGGCAACGTGAACTCGCGCTCCGGGCGCAAGTTCAGGCTGTAGTCGGACTGAGTGATTTCATCGTCGCTGGGCAGCTCAGGGCGCTTGTCCGGCGGCGTGGTGGCGATGGTGGCCTCGAACGGGTTGGTAAGAGGGTAGCCATAGc           >  5:170132/1‑149 (MQ=255)
                                                                                                                                    tCGGGCAACGTGAACTCGCGCTCCGGGCGCAAGTTCAGGCTGTAGTCGGACTGAGTGATTTCATCGTCGCTGGGCAGCTCAGGGCGCTTGTCCGGCGGCGTGGTGGCGATGGTGGCCTCGAACGGGTTGGTAAGAGGGTAGCCATAGCt          >  3:251696/1‑149 (MQ=255)
                                                                                                                                      gggCAACGTGAACTCGCGCTCCGGGCGCAAGTTCAGGCTGTAGTCGGACTGAGTGATTTCATCGTCGCTGGGCAGCTCAGGGCGCTTGTCCGGCGGCGTGGTGGCGATGGTGGCCTCGAACGGGTTGGTAAGAGGGTAGCCATAGCTgg        <  3:267608/149‑1 (MQ=255)
                                                                                                                                       ggCAACGTGAACTCGCGCTCCGGGCGCAAGTTCAGGCTGTAGTCGGACTGTGTGATTTCATCGTCGCTGGGCAGCTCAGGGCGCTTGTCCGGCGGCGTGGTGGCGATGGTGGCCTCGAACGGGTTGGTAAGAGGGTAGCCATAGCTGGc       <  6:103042/149‑1 (MQ=255)
                                                                                                                                        gCAACGTGAACTCGCGCTCCGGGCGCAAGTTCAGGCTGTAGTCGGACTGAGTGATTTCATCGTCGCTAAAGCAGGACAGGGCGGTTGTCCGGCGGGGTGGTGGGGATGGTGGCCTCGAACGGGTTGGTAAGAGGGTAGCCATTGCTgg        >  1:279557/1‑148 (MQ=255)
                                                                                                                                        gCAACGTGAACTCGCGCTCCGGGCGCAAGTTCAGGCTGTAGTCGGACTGAGTGATTTCATCGTCGCTGGGCAGCTCAGGGCGCTTGTCCGGCGGCGTGGTGGCGATGGTGGCCTCGAACGGGTTGGTAaga                        >  3:139657/1‑131 (MQ=255)
                                                                                                                                        gCAACGTGAACTCGCGCTCCGGGCGCAAGTTCAGGCTGTAGTCGGACTGAGTGATTTCATCGTCGCTGGGCAGCTCAGGGCGCTTGTCCGGCGGCGTGGTGGCGATGGTGGCCTCGAACGGGTTGGTAaga                        <  4:139657/131‑1 (MQ=255)
                                                                                                                                            cGTGAACTCGCGCTCCGGGCGCAAGTTCAGGCTGTAGTCGGACTGAGTGATTTCATCGTCGCTGGGCAGCTCAGGGCGCTTGTCCGGCGGCGTGGTGGCGATGGTGGCCTCGAACGGGTTGGTAAGAGGGTAGCCATAGCTGGCAGCGt  >  3:13429/1‑149 (MQ=255)
                                                                                                                                            cGTGAACTCGCGCTCCGGGCGCAAGTTCAGGCTGTAGTCGGACTGAGTGATTTCATCGTCGCTGGGCAGCTCAGGGCGCTTGTCCGGCGGCGTGGTGGCGATGGTGGCCTCGAACGGGTTGGTAAGAGGGTAGCCATAGCTGGCAGCGt  <  4:251696/149‑1 (MQ=255)
                                                                                                                                              tGAACTTGCGCCCGGAGCGCGAGTTCAGGCTGTAGTCGGACTGAGTGATTTCATCGTCGCTGGGCAGCTCAGGgcgc                                                                        <  6:258299/77‑1 (MQ=37)
                                                                                                                                              tGAACTTGCGCCCGGAGCGCGAGTTCAGGCTGTAGTCGGACTGAGTGATTTCATCGTCGCTGGGCAGCTCAGGgcgc                                                                        >  5:258299/1‑77 (MQ=37)
                                                                                                                                               gAACTCGCGCTCCGGGCGCAAGTTCAGGCTGTAGTCGGACTGAGTGATTTCATCGTCGCTGGGCAGCTCAGGGCGCTTGTCCGGCGGCGTGGTGGCGTtggtg                                             <  5:248707/103‑1 (MQ=255)
                                                                                                                                               gAACTCGCGCTCCGGGCGCAAGTTCAGGCTGTAGACGGACTGAGTCATTTCATCGTCGCTGGGCAGCTCAGGGCGCTTGTCCGGCGGCGTGGTGGCGAtggtg                                             >  6:248707/1‑103 (MQ=255)
                                                                                                                                                aaCTCGCGCTCCGGGCGCAAGTTCAGGCTGTAGTCGGACTGAGTGATTTCATCGTCGCTGGGCAGCTCAGGGCGCTTGTCCGGCGGCGTGGTGGCGATGGTGGCCTCGAACGGGTTGGTAAGAGGGTAGCCATAGCTgg        <  2:32042/139‑1 (MQ=255)
                                                                                                                                                aaCTCGCGCTCCGGGCGCAAGTTCAGGCTGTAGTCGGACTGAGTGATTTCATCGTCGCTGGGCAGCTCAGGGCGCTTGTCCGGCGGCGTGGTGGCGATGGTGGCCTCGAACGGGTTGGTAAGAGGGTAGCCATAGCTgg        >  1:32042/1‑139 (MQ=255)
                                                                                                                                                    |                                                                                                                                             
AACAGCTTTTTCAGGTATTCATTGATGCTGCTGCTGTAGGGCGCGCCGGTGCCGGCGATGATGAAGATCAGCGGCGCTTCGTGATCCTGGCGGGCCAGGCGGTACTTGAGCTTCTTCACTGCCCAGAAGTTGTCGGGCAACGTGAACTCGCGCTCCGGGCGCAAGTTCAGGCTGTAGTCGGACTGAGTGATTTCATCGTCGCTGGGCAGCTCAGGGCGCTTGTCCGGCGGCGTGGTGGCGATGGTGGCCTCGAACGGGTTGGTAAGAGGGTAGCCATAGCTGGCAGCGT  >  NC_002947/1938691‑1938979

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: