| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 197,572 | G→A | 15.7% | K1026K (AAG→AAA) | PP_0168 → | putative surface adhesion protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 197,572 | 0 | G | A | 15.7% | 279.8 / 37.8 | 121 | K1026K (AAG→AAA) | PP_0168 | putative surface adhesion protein |
| Reads supporting (aligned to +/- strand): ref base G (54/47); new base A (12/7); total (67/54) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.64e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.58e-02 | |||||||||||
Only 100 of 121 total aligned reads displayed.
CACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGG‑CAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCAC > NC_002947/197431‑197715 | caccacCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGG‑CAAGACCCAgg > 3:202466/1‑149 (MQ=37)caccacCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGG‑CAAGACCCAgg > 6:260625/1‑149 (MQ=37)caccacCGCGACCCTGACGGCGAGCCCGACGGTCACCGAAGGCGGCGTGATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGG‑CAAGACCCAgg > 1:194765/1‑149 (MQ=37) accaccGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGG‑CAAGACCCAggg > 1:161653/1‑149 (MQ=37) ccaccGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGG‑CAAGACCCAggg > 8:284633/1‑148 (MQ=37) ccaccGCGACCCTGACGGCGAGCCCGTCGGTAACCGAAGGCGGCGTGATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAGCGGCCACACCATTACCGGTGCAGCCGG‑CAAGACCCa > 8:246503/1‑145 (MQ=11) ccaccGCGACCCTGACGGCGAGCCCGTCGGTAACCGAAGGCGGCGTGATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGG‑CAAGACCCa < 7:246503/145‑1 (MQ=37) caccGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGG‑CAAGACCCAGGGCa < 4:156657/149‑1 (MQ=37) ccGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGG‑CAAGACCCAGGGCAGc > 7:193922/1‑149 (MQ=37) cgcgACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGG‑CAAGACCCAGGGCAGCg < 4:202466/149‑1 (MQ=37) cccTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGG‑CAAGACCCAGGGCAGCGTCGAt > 3:1529/1‑149 (MQ=37) ccTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGG‑CAAGACCCAGGGCAGCGTCGAtt > 2:3039/1‑149 (MQ=37) cTGACGGCGAGCCCGTCGGTCACCGAAGGCTGCGTGATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGG‑CAAGACCCAGGGCAGCGTCGAttt < 7:284633/149‑1 (MQ=37) cTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGATCCTGAGCACTCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGG‑CAAGACCCAGGGCAGCGTCGAttt > 7:268046/1‑149 (MQ=37) tGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGG‑CAAGACCCAGGGCAGCGTCGATTTc > 8:207206/1‑149 (MQ=37) tGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCTACAACGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCAAACGGCCAAACCATTACCGTTGAAGCCGG‑CAAGACCCAGGGCAGCGTCGATTTc > 8:201949/1‑149 (MQ=255) aCGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGG‑CAAGACCCAGGGCAGCGTCGATTTc < 2:161653/147‑1 (MQ=37) aCGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGG‑CAAGACCCAGGGCAGCGTCGATTTCCa < 1:116147/149‑1 (MQ=37) cGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCCAAGACCCAGGGCAGCGTCGATTTCCa < 1:3039/149‑1 (MQ=255) gAGCCCGTAGGTCAGCGAAGGGTGCGTGATCACCTACACCGTGATCCTGAGAAATCCTGCCCACACGCCGGTAACCGTGACCCTGTCCAACGTACAAACAATTACCGTTGAAGCCGG‑CAAGACCCAGGGCAGCGTCGATTTCCAGAccc < 6:15602/149‑1 (MQ=11) gTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGG‑CAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCg > 5:245406/1‑148 (MQ=37) tCACCGAAGGCGGCGTGATCACATACACCGTGATCCTGAGCAATCATGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGG‑CAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGAc > 7:214717/1‑149 (MQ=255) tCACCGAAGGCGGCGTGAACACCTACACCGTGATCCTGAGCAATCCACCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGG‑CAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGAc > 4:62934/1‑149 (MQ=255) ccGAAGGCGGCGTGATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGG‑CAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTc < 8:253589/149‑1 (MQ=37) ccGAAGGCGGCGTGATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGG‑CAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTc > 7:311098/1‑149 (MQ=37) cGAAGGCGGCGTGATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGG‑CAAGACCCAGGGCAGCGTCGATTTCCAGAcccc > 7:54540/1‑135 (MQ=37) cGAAGGCGGCGTGATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGG‑CAAGACCCAGGGCAGCGTCGATTTCCAGAcccc < 8:54540/135‑1 (MQ=37) cGAAGGCGGCGTGATCACCTACACCGTGATCCTGAGCAAACCTGCCCAGACGCAGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGG‑CAATACCAAGGGCAGCGTCGATTTCCAGACCACGGCGAATGACGTc > 7:272285/1‑148 (MQ=11) cGAAGGCCGCGTGATCACCTACACCGAGAACCTGAGCAATCCTGCCCAGACGCCGCTAACCGTGACACTGACCAACGGCCAAACAATTACCGTTGAAGCCGG‑CAAGACCAAGCGCAGCGTCGATTTCAAGACCCCGGCGAATGACGTc > 2:310152/1‑148 (MQ=11) gAAGGCGGCGTGATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGG‑CAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTa > 8:211623/1‑149 (MQ=37) aGGCGTCGTGATCACCTACACCGTGATCCTGAGAAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGG‑CAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTaca < 5:60126/149‑1 (MQ=255) gcggcgTGATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGG‑CAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTacaac < 6:182509/149‑1 (MQ=37) ggcgTGATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGG‑CAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTAcaacaa > 3:1990/1‑149 (MQ=37) gcgTGATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCATGTCCAACGGCCAAACCATTACCGTTGAAGCCGG‑CAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACaacaac > 2:272752/1‑149 (MQ=37) gTGATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGG‑CAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACgg > 4:157072/1‑149 (MQ=37) aTCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGG‑CAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGtt < 4:180258/148‑1 (MQ=37) aTCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGG‑CAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGtt < 5:293629/148‑1 (MQ=37) aTCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGG‑CAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGtt < 1:172996/148‑1 (MQ=37) tCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGG‑CAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTc < 7:314242/148‑1 (MQ=37) aCCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGG‑CAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGa < 6:114927/148‑1 (MQ=37) aCCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGG‑CAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGAc > 8:78031/1‑149 (MQ=37) cTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGG‑CAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGAc > 2:231011/1‑127 (MQ=38) acacCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGG‑CAAGACCCAGTGCAGCTTCGATATCCAGACCCCGGCGAATGACGTCTACAACAACGCTACGACTGt > 3:230851/1‑148 (MQ=14) cacCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGG‑CAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCa < 6:245406/149‑1 (MQ=21) acCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGG‑CAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAg < 8:32618/149‑1 (MQ=39) acCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGG‑CAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAg > 3:326914/1‑149 (MQ=21) cGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGG‑CAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCg > 3:82627/1‑149 (MQ=39) cGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGG‑CAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCg > 8:19009/1‑149 (MQ=39) tGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGG‑CAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGt > 3:156555/1‑148 (MQ=21) aTCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGT‑CAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCAc > 1:23442/1‑149 (MQ=18) cTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGG‑CAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCAt > 2:264142/1‑149 (MQ=17) tGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGG‑CAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATc > 8:144149/1‑149 (MQ=17) tGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGG‑CAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATc > 6:110920/1‑149 (MQ=17) aGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGG‑CAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACTACGGTTCGACTGTCAGCGTCACCATc < 4:1529/147‑1 (MQ=37) gCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGG‑CAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATc > 1:233836/1‑146 (MQ=17) aaTCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGG‑CAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGaa < 2:233836/149‑1 (MQ=17) tCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGG‑CAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACg < 5:260625/149‑1 (MQ=37) ccTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGG‑CAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGc > 8:227214/1‑149 (MQ=17) cTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGG‑CAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGc < 2:11431/131‑1 (MQ=37) cTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGG‑CAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGc > 1:11431/1‑131 (MQ=37) cTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGG‑CAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCga < 2:25755/142‑1 (MQ=17) cTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGG‑CAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCga > 1:25755/1‑142 (MQ=17) gCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGG‑CAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCca > 2:173784/1‑148 (MQ=37) cccAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGG‑CAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCca > 2:122022/1‑147 (MQ=17) cAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGG‑CAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAgg > 5:47958/1‑149 (MQ=255) gACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGG‑CAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCg < 7:144149/149‑1 (MQ=17) ccGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGG‑CAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGACTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTaa > 4:213179/1‑149 (MQ=37) gtgaCCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGG‑CAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGc < 5:70295/131‑1 (MQ=0) gtgaCCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGG‑CAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGc > 6:70295/4‑134 (MQ=0) tgaCCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGG‑CAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTc < 6:47958/147‑1 (MQ=255) tAACCGTGACCCTGTCCAACGTCCAAACCATTACCGTTGAAGCCGG‑CAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTc < 7:201949/149‑1 (MQ=14) tAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGG‑CAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTc < 4:82627/149‑1 (MQ=35) tAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGG‑CAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTc < 8:311098/149‑1 (MQ=14) tAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGG‑CAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTc < 7:207206/149‑1 (MQ=14) aCCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGG‑CAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGa < 3:301609/149‑1 (MQ=34) ccGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGG‑CAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAg < 7:211623/149‑1 (MQ=33) cGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGG‑CAAGACCCAGGGCAGCGTCGATTTCCAGAccc < 4:210574/74‑1 (MQ=31) tattCCAACGGCCAAACCATTACCGTTGAAGCCGG‑CAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGAc < 5:311628/146‑1 (MQ=17) cTGTCCAACGGCCAAACGATTACCGTTGAAGCCGG‑CAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGAc > 4:85916/1‑149 (MQ=12) cTGTCCAACGGCCAAACGATTACCGTTGAAGCCGG‑CAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGAc > 3:192364/1‑149 (MQ=12) tCCAACGGCCAAACCATTACCGTTGAAGCCGG‑CAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGAcccc > 6:320244/1‑149 (MQ=32) tCCAACGGCCAAACCATTACCGTTGAAGCCGG‑CAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGAccc < 4:1990/148‑1 (MQ=32) ccAACGGCCAAACCATTACCGTTGAAGCCGG‑CAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGAc > 6:311628/1‑145 (MQ=32) cAACGGCCAAACGATTACCGTTGAAGCCGG‑CAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCgg < 1:36876/126‑1 (MQ=12) cAACGGCCAAACGATTACCGTTGAAGCCGG‑CAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCgg > 2:36876/1‑126 (MQ=12) cAACGGCCAAACGATTACCGTTGAAGCCGG‑CAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCg > 6:167186/1‑148 (MQ=12) aaCGGCCAAACCATTACCGTTGAAGCCGG‑CAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGaa > 8:299696/1‑149 (MQ=32) aaCGGCCAAACCATTACCGTTGAAGCCGG‑CAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGaa < 7:78031/149‑1 (MQ=32) aCGGCCAAACGATTACCGTTGAAGCCGG‑CAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGc < 6:38555/122‑1 (MQ=12) aaCCATTACCGTTGAAGCCGG‑CAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACGc < 1:310152/149‑1 (MQ=35) aCCATTACCGTTGAAGCCGG‑CAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACGcc > 6:300839/1‑149 (MQ=37) aTTACCGTTGAAGCCGG‑CAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGc < 3:213179/149‑1 (MQ=37) ccGTTGAAGCCGG‑CAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACCCCGGCTCa < 4:147097/148‑1 (MQ=12) cGTTGAAGCCGG‑CAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGa > 6:275768/1‑149 (MQ=37) gTTGAAGCCGG‑CAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGAc > 4:72465/1‑149 (MQ=37) ttGAAGCCGG‑CAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGAccc > 6:301316/1‑136 (MQ=16) aaGCCGG‑CAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCAc < 5:320244/148‑1 (MQ=37) aaGCCGG‑CAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACg < 2:330061/149‑1 (MQ=37) gCCGG‑CAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACCCCGGCTCAGACCACGAt > 4:31138/1‑149 (MQ=12) gg‑CAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCAc > 7:31099/1‑149 (MQ=38) | CACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGG‑CAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCAC > NC_002947/197431‑197715 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |