| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 2,282,779 | C→A | 14.4% | intergenic (‑171/+58) | PP_2010 ← / ← PP_2011 | cytochrome b561/hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 2,282,779 | 0 | C | A | 14.4% | 116.4 / 8.1 | 53 | intergenic (‑171/+58) | PP_2010/PP_2011 | cytochrome b561/hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base C (25/19); new base A (4/4); total (30/23) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.94e-01 | |||||||||||
GCGCTCTTGCTGGCGCTCAGGAGTCATTTTAATGGCTACCGGAAACAGATCTTTGCGCCAGGTCTGTGAAAAATGTGTTGCCAG‑CCACCGGCCTCTTCGCTGGCACGCC‑CGCTCCCACAGTCCAACTGCACAGTCTTGGAAGCCTGTGCAGTTGGACTGTGGGAGCGGGCGTGCCCGCGAAGGGGCCGG‑AGCAGGCGACATCAGTTACCGGGCAGATAGGGCCAGTCATCACCCACCAGAAACACCCGTTCTGCCTCCTGCCAGGCACCATCGGCATCAGGCACCAG > NC_002947/2282637‑2282923 | gcgcTCTTGCTGGCGCTCAGGAGTCATTTTAATGGCTACCGGAAACAGATCTTTGCGCCAGGTCTGTGAAAAATGTGTTGCCAG‑CCACCGGCCTCTTCGCTGGCACGCC‑CGCTCCCACAGTCCAACTGCACAGTCTTGGAAGCCtgtg > 3:134329/1‑148 (MQ=255) cgcTCTTGCTGGCGCTCAGGAGTCATTTTAATGGCTACCGGAAACAGATCTTTGCGCCAGGTCTGTGAAAAATGTGTTGCCAG‑CCACCGGCCTCTTCGCTGGCACGCC‑CGCTCCCACAGTCCAACTGCACAGGCTTCCAAGACTGTGCa < 8:67597/149‑1 (MQ=255) gcTCTTGCTGGCGCTCAGGAGTCATTTTAATGGCTACCGGAAACAGATCTTTGCGCCAGGTCTGTGAAAAATGTGTTGCCAG‑CCACCGGCCTCTTCGCTGGCACGCC‑CGCTCCCACAGTCCAACTGCACAGTCTTGGAAGCCTGTGCAg < 2:144743/149‑1 (MQ=255) ctctTGCTGGCGCTCAGGAGTCATTTTAATGGCTACCGGAAACAGATCTTTGCGCCAGGTCTGTGAAAAATGTGTTGCCAG‑CCACCGGCCTCTTCGCTGGCACGCC‑CGCTCCCACAGTCCAACTGCACAGTCTTGGAAGCCtgtg < 7:229009/145‑1 (MQ=255) ctctTGCTGGCGCTCAGGAGTCATTTTAATGGCTACCGGAAACAGATCTTTGCGCCAGGTCTGTGAAAAATGTGTTGCCAG‑CCACCGGCCTCTTCGCTGGCACGCC‑CGCTCCCACAGTCCAACTGCACAGTCTTGGAAGCCtgtg > 8:229009/1‑145 (MQ=255) tctTGCTGGCGCTCAGGAGTCATTTTAATGGCTACCGGAAACAGATCTTTGCGCCAGGTCTGTGAAAAATGTGTTGCCAG‑CCACCGGCCTCTTCGCTGGCACGCC‑CGCTCCCACAGTCCAACGGCACCGTCTGGGAAGGCAGTGGAggt > 4:312014/1‑147 (MQ=39) ctTGCTGGCGCTCAGGAGTCATTTTAATGGCTACCGGAAACAGATCTTTGCGCCAGGTCTGTGAAAAATGTGTTGCCAG‑CCACCGGCCTCTTCGCTGGCACGCC‑CGCTCCCACAGTCCAACTGCACAGTCTTGGAAGCCTGTGCAGTTg > 2:295951/1‑149 (MQ=255) ttgcttgcGCTCAGGAGTCATTTTAATGGCTACCGGAAACAGATCTTTGCGCCAGGTCTGTGAAAAATGTGTTGCCAT‑CCACCGGCCTCTTCGCTGGCACGCC‑CGCTCCCACAGTCCAACTGCACAGTCTTGGAAGCCTGTGCAGtt < 6:60961/147‑1 (MQ=255) ttGCTGGCGCTCAGGAGTCATTTTAATGGCTACCGGAAACAGATCTTTGCGCCAGGTCTGTGAAAAATGTGTTGCCAG‑CCACCGGCCTCTTCGCTGGCACGCC‑CGCTCCCACAGTCCAACTGCACAGTCTTGGAAGCCTGTGCAGtt < 4:136156/147‑1 (MQ=255) cTGGCGCTCAGGAGTCATTTTAATGGCTACCGGAAACAGATCTTTGCGCCAGGTCTGTGAAAAATGTGTTGCCAG‑CCACCGGCCTCTTCGCTGGCACGCC‑CGCTCCCACAGTCCAACTGCACAGTCTTGGAAGCCTGTGCAGTTGGACt > 2:108365/1‑149 (MQ=255) aGTCATTTTAATGGCTACCGGAAACAGATCTTTGCGCCAGGTCTGTGAAAAATGTGTTGCCAG‑CCACCGGCCTCTTCGCTGGCACGCC‑CGCTCCCACAGTCCAACTGCACAGTCTTGGAAGCCTGTGCAGTTGGACTGTGGGAGCGGGc < 1:295951/149‑1 (MQ=255) ttttAATGGCTACCGGAAACAGATCTTTGCGCCAGGTCTGTGAAAAATGTGTTGCCAG‑CCACCGGCCTCTTCGCTGGCACGCC‑CGCTCCCACAGTCCAACTGCACAGTCTTGGAAGCCTGTGCAGtt < 7:192534/127‑1 (MQ=255) ttttAATGGCTACCGGAAACAGATCTTTGCGCCAGGTCTGTGAAAAATGTGTTGCCAG‑CCACCGGCCTCTTCGCTGGCACGCC‑CGCTCCCACAGTCCAACTGCACAGTCTTGGAAGCCTGTGCAGtt > 8:192534/1‑127 (MQ=255) tGGCTACCGGAAACAGATCTTTGCGCCAGGTCTGTGAAAAATGTGTTGCCAGACCACCGGCCTCTTCGCTGGCACGCC‑CGCTCCCACAGTCCAACTGCACAGTCTTGGAAGCCTGTGCAGTTGGACTGTGGGAGCGGGCGTGCCcgcg > 1:258496/1‑148 (MQ=255) cGGAAACAGATCTTTGCGCCAGGTCTGTGAAAAATGTGTTGCCAG‑CCACCGGCCCCTTCGCGGGCACGCC‑CGCTCCCACAGTCCAACTGCACAGGCTTCCAAGACTGTGCAGtt > 6:69908/1‑114 (MQ=18) cGGAAACAGATCTTTGCGCCAGGTCTGTGAAAAATGTGTTGCCAG‑CCACCGGCCCCTTCGCGGGCACGCC‑CGCTCCCACAGTCCAACTGCACAGGCTTCCAAGACTGTGCAGtt < 5:69908/114‑1 (MQ=18) aGATCTTTGCGCCAGGTCTGTGAAAAATGTGTTGCCAG‑CCACCGGCCTCTTCGCTGGCACGCC‑CGCTCCCACAGTCCAACTGCACAGTCTTGGAAGCCTGTGCAGTTGGACTGTgg > 8:144946/1‑116 (MQ=255) aGATCTTTGCGCCAGGTCTGTGAAAAATGTGTTGCCAG‑CCACCGGCCTCTTCGCTGGCACGCC‑CGCTCCCACAGTCCAACTGCACAGTCTTGGAAGCCTGTGCAGTTGGACTGTgg < 7:144946/116‑1 (MQ=255) gTCTGTGAAAAATGTGGGGCCAG‑CCACCGGCCTCTTCGCTGGCACGCC‑CGCTCCCACCGGCCACCTGCACAGTCTTGGACGCCTGTGCAGTTGGACTGTGGGAGCGGGCGTGCCCGCGAAGGGGCCGG‑AGCAGGCGACATCAGTTACCg < 3:312014/149‑1 (MQ=25) gtgAAAAATGTGTTGCCAG‑CCACCGGCCTCTTCGCTGGCACGCC‑CGCTCCCACAGTCCAACTGCACAGTCTTGGACGCCGGTGCAGTTGGACTGTGGGAGCGGGCGTGCCCGCGAAGGGGCCGG‑AGCAGGCGACATCAGTTACCggg > 7:145999/1‑147 (MQ=255) tgAAAAATGTGTTGCCAG‑CCACCGGCCTCTTCGCTGGCACGCCACGCTCCCACAGTCCAACTGCACCGTCTTGGAAGCCTGTGCAGTAGGACTGTTGGAGCGGGCGTGCCCGCGAAGGGGCCGG‑AGCAGGCGACATCAGTTACCggg > 1:66209/1‑147 (MQ=37) tgAAAAATGTGTTGCCAG‑CCACCGGCCTCTTCGCTGGCACGCC‑CGCTCCCACCGTCCAACTGCACAGTCTTGGAAGCCTGTGCAGTTGGACTGTGGGAGCGGGCGTGCCCGCGAAGGGGCCGG‑AGCAGGCGACATCa < 7:182197/137‑1 (MQ=255) tgAAAAATGTGTTGCCAG‑CCACCGGCCTCTTCGCTGGCACGCC‑CGCTCCCACAGTCCAACTGCACAGTCTTGGAAGCCGGTGGAGTTGGACTGTGGGAGCGGGCGTGCCCGCGAAGGGGCCGG‑CGCAGGCGGCAtga > 8:182197/1‑135 (MQ=21) aaaaTGTGTTGCCAG‑CCACCGGCCTCTTCGCTGGCACGCC‑CGCTCCCACAGTCCAACTGCACAGTCTTGGAAGCCTGTGCAGTTGGACTGTGGGAGCGGGCGTGCCCGCGAAGGGGCCGG‑AGCAGGCGACATCAGTTACCGGGCAGATa < 1:108365/149‑1 (MQ=255) ttGCCAG‑CCACCGGCCTCTTCGCTGGCACGCC‑CGCTCCCACAGTCCAACTGCACAGTCTTGGAAGCCTGTGCAGTTGGACTGTGGGAGCGGGCGTGCCCGCGAAGGGGCCGG‑AGCAGGCGACATCAGTTACCGGGCAGATAGGGCCAGt > 6:174296/1‑149 (MQ=255) ag‑ccaCCGGCCTCTTCGCTGGCACGCC‑CGCTCCCACAGTCCAACTGCACAGTCGTGGAAGCCGGGGCAGTTGGACGGTGGGAGCGGGCGTGCCCGCGGAGGGGCCGG‑CGCAGGCGCCCTCAGGTACCGGGCAGATAGGGCCCGtcatcc > 5:331318/1‑148 (MQ=21) g‑ccaCCGGCCTCTTCGCTGGCACGCC‑CGCTCCCACAGTCCAACTGCACAGTCTTGGAAGCCTGTGCAGTTGGACTGTGGGAGCGGGCGTGCCCACGAAGGGGCCGG‑AGCAGGCGACATCAGTTAc > 3:69355/1‑125 (MQ=255) g‑ccaCCGGCCTCTTCGCTGGCACGCC‑CGCTCCCACAGTCCAACTGCACAGTCTTGGAAGCCTGTGCAGTTGGACTGTGGGAGCGGGCGTGCCCACGAAGGGGCCGG‑AGCAGGCGACATCAGTTAc < 4:69355/125‑1 (MQ=255) ccaCCGGCCTCTTCGCTGGCACGCC‑CGCTCCCACAGTCCAACTGCACAGTCTTGGAAGCCTGGGCAGTTGGACTGGGGGAGCGGGCGTGCCCGCGAAGGGGCCGG‑AGCAGGCGACATCAGTTACCGGGCAGATAGGGCCAGTCCTcacc > 3:287627/1‑149 (MQ=255) gCACGCC‑CGCTCCCACAGTCCAACTGCACTGTCTTGGAAGCCTGTGCAGTTGGACTGTGGGAGCGGGCGTGCCCGCGAAGGGGCCGG‑AGCAGGCGACATCAGTTACCGGGCAGATAg < 4:68097/117‑1 (MQ=255) gCACGCC‑CGCTCCCACAGTCCAACTGCACAGTCTTGGAAGCCTGTGCAGTTTGACTGTGGGAGCGGGCGTGCCCGCGAAGGGGCCGG‑AGCAGGCGACATCAGTTa < 1:89391/105‑1 (MQ=255) gCACGCC‑CGCTCCCACAGTCCAACTGCACAGTCTTGGAAGCCTGTGCAGTTGGACTGTGGGAGCGGGCGTGCCCGCGAAGGGGCCGG‑AGCAGGCGACATCAGTTACCGGGCAGATAg > 3:68097/1‑117 (MQ=255) gCACGCC‑CGCTCCCACAGTCCAACTGCACAGTCTTGGAAGCCTGTGCAGTTGGACTGTGGGAGCGGGCGTGCCCGCGAAGGGGCCGG‑AGCAGGCGACATCAGTTACCGGGCAGATAGGGCCAGTCATCACCCACCAGAAACACCCGTTc > 8:68378/1‑149 (MQ=255) cACGCC‑CGCTCCCACAGTCCAACTGCACAGTCTTGGAAGCCTGTGCAGTTGGACTGTGGGAGCGGGCGTGCCCGCGAAGGGGCCGG‑AGCAGGCGACATCAGTTACCGGGCAGATAGGGCCAGTCATCACCCACCAGAAACACCCGTTCt > 4:35621/1‑149 (MQ=255) aCGCC‑CGCTCCCACAGTCCAACTGCACAGTCTTGGAAGCCTGTGCAGTTGGACTGTGGGAGCGGGCGTGCCCGCGAAGGGGCCGG‑AGCAGGCGACATCAGTTACCGGGCAGATAGGGCCAGTCATCACCCACCAGAAACACCCGTTCTg > 5:159269/1‑149 (MQ=255) c‑cGCTCCCACAGTCCAACTGCACAGTCTTGGAAGCCTGTTCAGTTGGACTGTGGGAGCGGGCGTGCCCGCGAAGGGGCCGG‑AGCAGGCGACATCAGTTACCGGGCAGATAGGGCCAGTCATCACCCACCAGAAACACCCGTTCTGcctc < 2:258496/149‑1 (MQ=255) c‑cGCTCCCACAGTCCAACTGCACAGTCTTGGAAGCCTGTGCAGTTGGACTGTGGGAGCGGGCGTGCCCGCGAAGGGGCCGG‑AGCAGGCGACATCAGTTACCGGGCAGATAGGGCCAGTCATCACCCACCAGAAACACCCGTTCTGcctc > 6:277387/1‑149 (MQ=255) c‑cGCTCCCACAGTCCAACTGCACAGTCTTGGAAGCCTGTGCAGTTGGACTGTGGGAGCGGGCGTGCCCGCGAAGGGGCCGG‑AGCAGGCGACATCAGTTACCGGGCAGATAGGGCCAGTCATCACCCACCAGAAACACCCGTTCTGcctc < 5:174296/149‑1 (MQ=255) tCCCACAGTCCAACTGCACAGGCTTCCAAGACTGTGCAGTTGGACTGTGGGAGCGGGCGTGCCAGCGAAGAGGCCGGTGGCTGGCGACATCAGTTACCGGGCAGATAGGGCCAGTCATCACCCACCAGAAACACCCGTTCTGCCTCCTg < 7:181504/149‑1 (MQ=17) ccACAGTCCAACTGCACAGGCTTCCAAGACTGTGCAGTTGGACTGTGGGAGCGGGCGTGCCCGCGAAGGGGCCGG‑AGCAGGCGACATCAGTTACCGGGCAGATAGGGCCAGTCATCACCCACCAGAAACACCCGTTCTGCCTCCTGc > 5:306139/1‑147 (MQ=255) acaGTCCAACTGCACAGTCTTGGAAGCCTGTGCAGTTGGACTGTGGGAGCGGGCGTGCCCGCGAAGGGGCCGG‑AGCAGGCGACATCAGTTACCGGGCAGATAGGGCCAGTCATCACCCACCAGAAACACCCGTTCTGCCTCCTGCCAgg > 6:354591/1‑149 (MQ=255) cAACTGCACAGTCTTGGAAGCCTGTGCAGTTGGACTGTGGGAGCGGGCGTGCCCGCGAAGGGGCCGG‑AGCAGGCGACATCAGTTACCGGGCAGATAGGGCCAGTCATCACCCACCAGAAACACCCGTTCTGCCTCCTGCCAGGCACCAt > 3:252040/1‑149 (MQ=255) aaCTGCACAGTCTTGGAAGCCTGTGCAGTTGGACTGTGGGAGCGGGCGTGCCCGCGAAGGGGCCGG‑AGCAGGCGACATCAGTTACCGGGCAGATAGGGCCAGTCATCACCCACCAGAAACACCCGTTCt > 5:282359/1‑129 (MQ=255) aaCTGCACAGTCTTGGAAGCCTGTGCAGTTGGACTGTGGGAGCGGGCGTGCCCGCGAAGGGGCCGG‑AGCAGGCGACATCAGTTACCGGGCAGATAGGGCCAGTCATCACCCACCAGAAACACCCGTTCt < 6:282359/129‑1 (MQ=255) aaCTGCACAGGCTTCCAAGACTGTGCAGTTGGACTGTGGGAGCGGGCGTGCCCGCGAAGGGGCCGG‑AGCAGGCGACATCAGTTACCGGGCAGATAGGGCCAGTCATCACCCACCAGAAACACCCGTTCTGCCTCCTGCCAGGCACCATc < 2:253989/149‑1 (MQ=255) aaCTGCACAGGCTTCCAAGACTGTGCAGTTGGACTGTGGGAGCGGGCGTGCCCGCGAAGGGGCCGG‑AGCAGGCGACATCAGTTACCGGGCAGATAGGGCCAGTCATCACCCACCAGAAACACCCGTTCTGCCTCCTGCCAGGCACCATc > 1:253989/1‑149 (MQ=255) cTGCACAGTCTTGGAAGCCTGTGCAGTTGGACTGTGGGAGCGGGCGTGCCCGCGAAGGGGCCGG‑AGCAGGCGACATCAGTTACCGGGCAGATAGGGCCAGTCATCACCCACCAGAAACACCCGTTCTGCCTCCTGCCAGGCACCATCgg < 4:252040/149‑1 (MQ=255) tGCACAGGCTTCCAAGACTGTGCAGTTGGACTGTGGGAGCGGGCGTGCCAGCGAAGGGGCCGG‑AGCAGGCGACATCAGTTACCGGGCAGATAGGGCCAGTCATCCCCCACCAGAAACACCAGTTCTGCCTCCTGCCAGCCACCATCgg > 6:209670/1‑148 (MQ=25) cacaGTCTTGGAAGCCTGTGCAGTTGGACTGTGGGAGCGGGCGTGCCCGCGAAGGGGCCGG‑AGCAGGCGACATCAGTTACCGGGCAGATAGGGCCAGTCATCACCCACCAGAAACACCCGTTCTGCCTCCTGCCAGGCACCATCGGCAt > 6:172374/1‑149 (MQ=255) cacaGTCTTGGAAGCCTGTGCAGTTGGACTGTGGGAGCGGGCGTGCCCGCGAAGGGGCCGG‑AGCAGGCGACATCAGTTACCGGGCAGATAGGGCCAGTCATCACCCACCAGAAACACCCGTTCTGCCTCCTGCCAGGCACCATCGGCAt > 4:95300/1‑149 (MQ=255) aGTCTTGGAAGCCTGTGCAGTTGGACTGTGGGAGCGGGCGTGCCCGCGAAGGGGCCGG‑AGCAGGCGACATCAGTTACCGGGCAGATAGGGCCAGTCATCACCCACCAGAAACACCCGTTCTGCCTCCTGCCAGGCACCATCGGCATCAg < 3:95300/149‑1 (MQ=255) gTCTTGGAAGCCTGTGCAGTTGGACTGTGGGAGCGGGCGTGCCCGCGAAGGGGCCGG‑AGCAGGCGACATCAGTTACCGGGCAGATAGGGCCAGTCATCACCCACCAGAAACACCCGTTCTGCCTCCTGCCAGGCACCATCGGCATCAgg < 3:35621/149‑1 (MQ=255) gAAGCCTGTGCAGTTGGACTGTGGGAGCGGGCGTGCCCGCGAAGGGGCCGG‑AGCAGGCGACATCAGTTACCGGGCAGATAGGGCCAGTCATCACCCACCAGAAACACCCGTTCTGCCTCCTGCCAGGCACCATCGGCATCAGGCACCAg > 5:92804/1‑149 (MQ=255) | GCGCTCTTGCTGGCGCTCAGGAGTCATTTTAATGGCTACCGGAAACAGATCTTTGCGCCAGGTCTGTGAAAAATGTGTTGCCAG‑CCACCGGCCTCTTCGCTGGCACGCC‑CGCTCCCACAGTCCAACTGCACAGTCTTGGAAGCCTGTGCAGTTGGACTGTGGGAGCGGGCGTGCCCGCGAAGGGGCCGG‑AGCAGGCGACATCAGTTACCGGGCAGATAGGGCCAGTCATCACCCACCAGAAACACCCGTTCTGCCTCCTGCCAGGCACCATCGGCATCAGGCACCAG > NC_002947/2282637‑2282923 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |