Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 2,511,676 | T→C | 12.2% | T19A (ACG→GCG) ‡ | copA‑I ← | copper resistance protein A |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 2,511,676 | 0 | T | C | 12.2% | 141.7 / 8.5 | 57 | T19A (ACG→GCG) ‡ | copA‑I | copper resistance protein A |
Reads supporting (aligned to +/- strand): ref base T (27/23); new base C (3/4); total (30/27) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 6.97e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
GTTGACGGTCAGTGCGGTACGCGGTCGGCCTGTGATGTTGACCGGAGTCTGGCCAATGAACAGCTCGAAATGCTGGCCGGCCAGGTCTCGGCCTTCAGCGGCCTGGACCAGCGGGCGCCACAGACCCAGGC‑CCGCCAGCGTGCTGGCGGCGCCCAGGCCTTTGACAAACGTACGGCGGGAGGGGTTGCGCAACATGGCGAGGCCTCATGCGGAATAGCCACGATGTTCGCTGCCGCCTGCTGTCA‑GGTAGCTGAGGTGCACATTACAGTGTTGTCAGCTTGCTGCTTC > NC_002947/2511536‑2511823 | gttgACGGTCAGTGCGGTACGCGGTCGGCCTGTGATGTTGACCGGAGTCTGGCCAATGAACAGCTCGAAATGCTGGCCGGCCAGGTCTCGGCCTTCAGCGGCCTGGACCAGCGGGCGCCACAGACCCAGGCGCCGCCAGCACGCTggcg > 8:106492/1‑149 (MQ=255) ttgACGGTCAGTGCGGTACGCGGTCGGCCTGTGATGTTGACCGGAGTCTGGCCAATGAACAGCTCGAAATGCTGGCCGGCCAGGTCTCGGCCTTCAGCGGCCTGGACCAGCGGGCGCCACAGACCCAGGC‑CCGCCAGCACGCTggcgg < 6:354138/148‑1 (MQ=255) ttgACGGTCAGTGCGGTACGCGGTCGGCCTGTGATGTTGACCGGAGTCTGGCCAATGAACAGCTCGAAATGCTGGCCGGCCAGGTCTCGGCCTTCAGCGGCCTGGACCAGCGGGCGCCACAGACCCAGGC‑CCGCCAGCACGCTggcgg < 8:80359/148‑1 (MQ=255) gACGGTCAGTGCGGTACGCGGTCGGCCTGTGATGTTGACCGGAGTCTGGCCAATGAACAGCTCGAAATGCTGGCCGGCCAGGTCTCGGCCTTCAGCGGCCTGGACCAGCGGGCGCCACAGACCCAGGCGCCGCCAGCACGCTggcggg < 7:106492/148‑2 (MQ=255) ggTCAGTGCGGTACGCGGTCGGCCTGTGATGTTGACCGGAGTCTGGCCAATGAACAGCTCGAAATGCTGGCCGGCCAGGTCTCGGCCTTCAGCGGCCTGGACCAGCGGGCGCCACAGACCCAGGC‑CCGCCAGCGTGCTGGCGGCGcc > 8:249431/1‑147 (MQ=255) gTCAGTGCGGTACGCGGTCGGCCTGTGATGTTGACCGGAGTCTGGCCAATGAACAGCTCGAAATGCTGGCCGGCCAGGTCTCGGCCTTCAGCGGCCTGGACCAGCGGACGCCACAGACCCAGGC‑CCGCCAGCGTGCTGGCGGCGCCCAg > 6:145880/1‑149 (MQ=255) gTACGCGGTCGGCCTGTGATGTTGACCGGAGTCTGGCCAATGAACAGCTCGAAATGCTGGCCGGCCAGGTCTCGGCCTTCAGCGGCCTGGACCAGCGGGCGCCACAGACCCAGGC‑CCGCCAGCGTGCTggcggc < 1:25595/134‑1 (MQ=255) gTACGCGGTCGGCCTGTGATGTTGACCGGAGTCTGGCCAATGAACAGCTCGAAATGCTGGCCGGCCAGGTCTCGGCCTTCAGCGGCCTGGACCAGCGGGCGCCACAGACCCAGGC‑CCGCCAGCGTGCTggcggc > 2:25595/1‑134 (MQ=255) tCGGCCTGTGATGTTGACCGGAGTCTGGCCAATGAACAGCTCGAAATGCTGGCCGGCCAGGTCTCGGCCTTCAGCGGCCTGGACCAGCGGGCGCCACAGACCCAGGC‑CCGCCAGCGTGCTGGCGGCGCCCAGGCCTTTGACAAACGTAc < 1:318781/149‑1 (MQ=255) ggCCTGTGATGTTGACCGGAGTCTGGCCAATGAACAGCTCGAAATGCTGGCCGGCCAGGTCTCGGCCTTCAGCGGCCTGGACCAGCGGGCGCCACAGACCCAGGC‑CCGCCAGCGTGCTGGCGGCGCCCAGGCCTTTGACAAACGTAcgg > 8:150933/1‑149 (MQ=255) tgtgATGTTGACCGGAGTCTGGCCAATGAACAGCTCGAAATGCTGGCCGGCCAGGTCTCGGCCTTAAGCGGCCTGGACCAGCGGGCGCCACAGACCCAGGC‑CCGCCAGCGTGCTGGCGGCGCCCAGGCCTTTGACAAACGTAcggcgg > 5:324901/1‑148 (MQ=255) tgATGTTGACCGGAGTCTGGCCAATGAACAGCTCGAAATGCTGGCCGGCCAGGTCTCGGCCTTCAGCGGCCTGGACCAGCGGGCGCCACAGACCCAGGC‑CCGCCAGCGTGCTGGCGGCGCCCAGGCCTTTGACAAACGTACGGCGGGAg < 5:231136/149‑1 (MQ=255) gACCGGAGTCTGGCCAATGAACAGCTCGAAATGCTGGCCGGCCAGGTCTCGGCCTTCAGCGGCCTGGACCAGCGGGCGCCACAGACCCAGGC‑CCGCCAGCGTGCTGGCGGCGCCCAGGCCTTTGACAAACGTACGGCGGGAGGGGTTgc > 1:83685/1‑149 (MQ=255) aCCGGAGTCTGGCCAATGAACAGCTCGAAATGCTGGCCGGCCAGGTCTCGGCCTTCAGCGGCCTGGACCAGCGGGCGCCACAGACCCAGGC‑CCGCCAGCGTGCTGGCGGCGCCCAGGCCTTTGACAAACGTACGGCGGGAGGGGTTgc < 6:324901/148‑1 (MQ=255) aCCGGAGTCTGGCCAATGAACAGCTCGAAATGCTGGCCGGCCAGGTCTCGGCCTTCAGCGGCCTGGACCAGCGGACGCCACAGACCCAGGC‑CCGCCAGCGTGCTGGCGGCGCCCAGGCCTTTGACAAACGTACGGCGGGAGGGGTTgc < 5:145880/148‑1 (MQ=255) ggAGTCTGGCCAATGAACAGCTCGAAATGCTGGCCGGCCAGGTCTCGGCCTTCAGCGGCCTGGACCAGCGGGCGCCACAGACCCAGGC‑CCGCCAGCGTGCTGGCGGCGCCCAGGCCTTTGACAAACGTACGGCGGGAGGGGTTGCGCaa < 8:306708/149‑1 (MQ=255) tCTGGCCAATGAACAGCTCGAAATGCTGGCCGGCCAGGTCTCGGCCTTCAGCGGCCTGGACCAGCGGGCGCCACAGACCCAGGC‑CCGCCAGCGTGCTGGCGGCGCCCa < 8:288373/108‑1 (MQ=255) tCTGGCCAATGAACAGCTCGAAATGCTGGCCGGCCAGGTCTCGGCCTTCAGCGGCCTGGACCAGCGGGCGCCACAGACCCAGGC‑CCGCCAGCGTGCTGGCGGCGCCCa > 7:288373/1‑108 (MQ=255) tCTGGCCAATGAACAGCTCGAAATGCTGGCCGGCCAGGTCTCGGCCTTCAGCGGCCTGGACCAGCGGGCGCCACAGACCCAGGC‑CCGCCAGCGTGCTGGCGGCGCCCAGGCCTTTGACAAACGTACGGCGGGAGGGGTTGCGCAACATg > 4:208326/1‑149 (MQ=255) aaTGAACAGCTCGAAATGCTGGCCGGCCAGGTCTCGGCCTTCAGCGGCCTGGACCAGCGGGCGCCACAGACCCAGGC‑CCGCCAGCGTGCTGGCGGCGCCCAGGCCTTTGACAAACGTACGGCGGGAGGGGTTGCGCAACATGGCGAg < 3:161136/147‑1 (MQ=255) aaTGAACAGCTCGAAATGCTGGCCGGCCAGGTCTCGGCCTTCAGCGGCCTGGACCAGCGGGCGCCACAGACCCAGGC‑CCGCCAGCGTGCTGGCGGCGCCCAGGCCTTTGACAAAAGTACGGCGGGAGGGGTTGAGCAACATGCCGAg > 4:161136/1‑147 (MQ=255) gAACAGCTCGAAATGCTGGCCGGCCAGGTCTCGGCCTTCAGCGGCCTGGACCAGCGGGCGCCACAGACCCAGGC‑CCGCCAGCGTGCTGGCGGCGCCCAGGCCTTTGACAAACGTACGGCGGGAGGGGTTGCGCAACATGGCGAGGcat > 3:61015/1‑146 (MQ=255) aCAGCTCGAAATGCTGGCCGGCCAGGTCTCGGCCTTCAGCGGCCTGGACCAGCGGGCGCCACAGACCCAGGC‑CCGCCAGCGTGCTGGCGGCGCCCAGGCCTTTGACAAACGTACGGCGGGAGGGGTTGCGCAACATGGCGAGGCCTCa < 3:208326/148‑1 (MQ=255) gAAATGCTGGCCGGCCAGGTCTCGGCCTTCAGCGGCCTGGACCAGCGGGCGCCACAGACCCAGGC‑CCGCCAGCGTGCTGGCGGCGCCCAGGCCTTTGACAAACGTACGGCGGGAGGGGTTGCGCAAc < 5:299428/127‑1 (MQ=255) gAAATGCTGGCCGGCCAGGTCTCGGCCTTCAGCGGCCTGGACCAGCGGGCGCCACAGACCCAGGC‑CCGCCAGCGTGCTGGCGGCGCCCAGGCCTTTGACAAACGTACGGCGGGAGGGGTTGCGCAAc > 6:299428/1‑127 (MQ=255) aaTGCTGGCCGGCCAGGTCTCGGCCTTCAGCGGCCTGGACCAGCGGGCGCCACAGACCCAGGC‑CCGCCAGCGTGCTGGCGGCGCCCAGGCCTTTGACAAACGTACGGCGGGAGGGGTTGCGCAACATGGCGAGGCCTCATGCGGAATAg > 7:100332/1‑149 (MQ=255) tGGCCGGCCAGGTCTCGGCCTTCAGCGGCCTGGACCAGCGGGCGCCACAGACCCGGGC‑CCGCCAGCGTGCTGGCGGCGCCCAGGCCTTTGACAAACGTACGGCGGGAGGGGTTGCGCAACATGGCGAGGCCTCAt > 7:89660/1‑135 (MQ=255) tGGCCGGCCAGGTCTCGGCCTTCAGCGGCCTGGACCAGCGGGCGCCACAGACCCGGGC‑CCGCCAGCGTGCTGGCGGCGCCCAGGCCTTTGACAAACGTACGGCGGGAGGGGTTGCGCAACATGGCGAGGCCTCAt < 8:89660/135‑1 (MQ=255) gccggccAGGTCTCGGCCTTCAGCGGCCTGGACCAGCGGGCGCCACAGACCCAGGC‑CCGCCAGCGTGCTGGCGGCGCCCAGGCCTTTGACAAACGTACGGCGGGAGGGGTTGCGCAACATGGCGAGGCCTCATGCGGAATAGCCACGAt > 8:309730/1‑149 (MQ=255) cggccAGGTCTCGGCCTTCAGCGGCCTGGACCAGCGGGCGCCACAGACCCCGGC‑CCGCCAGCGTGCTGGCGGCGCCCAGGCCTTTGACAAACGTACGGCGGGAGGGGTTGCGCAACATGGCGAGGCCTCATGCGGAATAGCCACGATGt > 1:309287/1‑149 (MQ=255) cggccAGGTCTCGGCCTTCAGCGGCCTGGACCAGCGGGCGCCACAGACCCAGGC‑CCGCCAGCGTGCTGGCGGCGCCCAGGCCTTTGACAAACGTACGGCGGGAGGGGTTGCGCAACATGGCGAGGCCTCATGCGGAATAGCCACGATGt < 7:150933/149‑1 (MQ=255) cgccAGGTCTCGGCCTTCAGCGGCCTGGACCAGCGGTCGCCACAGACCCAGGC‑CCGCCAGCGTGCGGGCGGCGCCCAGGCCTTTGACAAACGTACGGCGGGAGGGGTTGCGCAACATGGCGAGGCCTCATGCGGAATAGCCACGATGtt < 8:176239/148‑1 (MQ=255) gccAGGTCTCGGCCTTCAGCGGCCTGGACCAGCGGGCGCCACAGACCCAGGC‑CCGCCAGCGTGCTGGCGGCGCCCAGGCCTTTGACAAACGTACGGCGGGAGGGGTTGCGCAACATGGCGAGGCCTCATGCGGAATAGCCACGATGTTc > 1:163633/1‑149 (MQ=255) tctcGGCCTTCAGCGGCCTGGACCAGCGGGCGCCACAGACCCAGGC‑CCGCCAGCGTGCTGGCGGCGCCCAGGCCTTTGACAAACGTACGGCGGGAGGGGTTGCGCAACATGGCGAGGCCTCATGCGGAATAGCCACGATGTTCGCTgc < 8:292868/148‑1 (MQ=255) tctcGGCCTTCAGCGGCCTGGACCAGCGGGCGCCACAGACCCAGGC‑CCGCCAGCGTGCTGGCGGCGCCCAGGCCTTTGACAAACGTACGGCGGGAGGGGTTGCGCAACATGGCGAGGCCTCATGCGGAATAGCCACGATGTTCGCTgc > 7:292868/1‑148 (MQ=255) ggCCTTCAGCGGCCTGGACCAGCGGGCGCCACAGACCCACGC‑CCGCCAGCGTGCTGGCGGCGACCACGCCTTTGACAAACGAACCGCGGGACGGGGTGCGCAACATGACGAGGCCTCATGCGGAATTGCCACGATGTTCGCTGCCGCct > 4:8831/1‑149 (MQ=255) ttCAGCGGCCTGGACCAGCGGGCGCCACAGACCCAGGC‑CCGCCAGCGTGCTGGCGGCGCCCAGGCCTTTGACAAACGTACGGCGGGAGGGGTTGCGCAACATGGCGAGGCCTCATGCGGAATAGCCACGATGTTCGCTGCCGCctgctg > 3:215943/1‑149 (MQ=255) tCAGCGGCCTGGACCAGCGGGCGCCACAGACCCAGGC‑CCGCCAGCGTGCTGGCGGCGCCCAGGCCTTTGACAAACGTACGGCGGGAGGGGTTGCGCAACATGGCGAGGCCTCATGCGGAATAGCCACGATGTTCGCTGCCGCCTGCTGt > 3:202647/1‑149 (MQ=255) gCGGCCTGGACCAGCGGGCGCCACAGACCCAGGC‑CCGCCAGCGTGCTGGCGGCGCCCAGGCCTTTGACAAACGTACGGCGGGAGGGGTTGCGCAACATGGCGAGGCCTCATGCGGAATAGCCACGATGTTCGCTGCCGCCTGCTGTCA‑g < 2:163633/149‑1 (MQ=255) gCCTGGACCAGCGGGCGCCACAGACCCAGGC‑CCGCCAGCGTGCTGGCGGCGCCCAGGCCTTTGACAAACGTACGGCGGGAGGGGTTGCGCAACATGGCGAGGCCTCATGCGGAATAGCCACGATGTTCGCTGCCGCCTGCTGTCA‑gg > 5:237642/1‑147 (MQ=255) ccTGGACCAGCGGGCGCCACAGACCCAGGC‑CCGCCAGCGTGCTGGCGGCGCCCAGGCCTTTGACAAACGTACGGCGGGAGGGGTTGCGCAACATGGCGAGGCCTCATGCGGAATAGCCACGATGTTCGCTGCCGCCTGCTGTCA‑GGTAg > 8:123369/1‑149 (MQ=255) gACCAGCGGGCGCCACAGACCCAGGC‑CCGCCAGCGTGCTGGCGGCGCCCAGGCCTTTGACAAACGTACGGCGGGAGGGGTTGCGCAACATGGCGAGGCCTCATGCGGAATAGCCACGATGTTCGCTGCCGCCTGCTGTCA‑GGTAGCt > 4:53056/1‑147 (MQ=255) gACCAGCGGGCGCCACAGACCCAGGC‑CCGCCAGCGTGCTGGCGGCGCCCAGGCCTTTGACAAACGTACGGCGGGAGGGGTTGCGCAACATGGCGAGGCCTCATGCGGAATAGCCACGATGTTCGCTGCCGCCTGCTGTCA‑GGTAGCTGa < 8:100332/149‑1 (MQ=255) ccAGCGGGCGCCACAGACCCAGGC‑CCGCCAGCGTGCTGGCGGCGCCCAGGCCTTTGACAAACGTACGGCGGGAGGGGTTGCGCAACATGGCGAGGCTTCATGCGGAATAGCCACGATGTTCGCTGCCGCCTGCTGTCA‑GGTAGCTGAgg < 4:61015/149‑1 (MQ=255) ggCGCCACAGACCCAGGC‑CCGCCAGCGTGCTGGCGGCGCCCAGGCCTTTGACAAACGTACGGCGGGAGGGGTTGCGCAACATGGCGAGGCCTCATGCGGAATAGCCACGATGTTCGCTGCCGCCTGCTGTCA‑GGTAGCTGAGGTGcaca < 7:123369/149‑1 (MQ=255) cacaGACCCAGGC‑CCGCCAGCGTGCTGGCGGCGCCCAGGCCTTTGACAAACGTACGGCGGGAGGGGTTGCGCAACATGGCGAGGCCTCATGCGGAATAGCCACGATGTTCGCTGCCGCCTGCTGTCA‑GGTAGCTGAGGTGCACATTACa < 1:106681/149‑1 (MQ=255) caGACCCAGGC‑CCGCCAGCGTGCTGGCGGCGCCCAGGCCTTTGACAAACGTACGGCGGGAGGGGTTGCGCAACATGGCGAGGCCTCATGCGGAATAGCCACGATGTTCGCTGCCGCCTGCTGTCA‑GGTAGCTGAGGTGCACATTACAgt > 8:145572/1‑149 (MQ=255) aGACCCAGGC‑CCGCCAGCGTGCTGGCGGCGCCCAGGCCTTTGACAAACGTACGGCGGGAGGGGTTGCGCAACATGGCGAGGCCTCATGCGGAATAGCCACGATGTTCGCTGCCGCCTGCTGTCA‑GGTAGCTGAGGTGCACATTACAgtg < 7:309730/149‑1 (MQ=255) gACCCAGGC‑CCGCCAGCGTGCTGGCGGCGCCCAGGCCTTTGACAAACGTACGGCGGGAGGGGTTGCGCAACATGGCGAGGCCTCATGCGGAATAGCCACGATGTTCGCTGCCGCCTGCTGTCA‑GGTAGCTGAGGTGCACATTACAgtgt < 7:249431/149‑1 (MQ=255) aCCCAGGC‑CCGCCAGCGTGCTGGCGGCGCCCAGGCCTTTGACAAACGTACGGCGGGAGGGGTTGCGCAACATGGCGAGGCCTCATGCGGAATAGCCACGATGTTCGCTGCCGCCTGCTGTCA‑GGTAGCTGAGGTGCACATTACAGtgtt < 6:237642/149‑1 (MQ=255) ctgggcgccGCCAGCACGCTGGCGGCGCCCAGGCCTTTGACAAACGTACGGCGGGAGGGGTTGCGCAACATGGCGAGGCCTCATGCGGAATAGCCACGATGTTCGCTGCCGCCTGCTGTCA‑GGTAGCTGAGGTGCACATTACAGtgttg > 7:30916/8‑149 (MQ=255) ccAGGC‑CCGCCAGCGTGCTGGCGGCGCCCAGGCCTTTGACAAACGTACGGCGGGAGGGGTTGCGCAACATGGCGAGGCCTCATGCGGAATAGCCACGATGTTCGCTGCCGCCTGCTGTCA‑GGTAGCTGAGGTGCACATTACAGtgttgt > 2:66144/1‑149 (MQ=255) cAGGC‑CCGCCAGCGTGCTGGCGGCGCCCAGGCCTTTGACAAACGTACGGCGGGAGGGGTTGCGCAACATGGCGAGGCCTCATGCGGAATAGCCACGATGTTCGCTGCCGCCTGCTGTCA‑GGTAGCTGAGGTGCACATTACAGtgttgt > 4:336921/1‑148 (MQ=255) gccGCCAGCACGCTGGCGGCGCCCAGGCCTTTGACAAACGTACGGCGGGAGGGGTTGCGCAACATGGCGAGGCCTCATGCGGAATAGCCACGATGTTCGCTGCCGCCTGCTGTCA‑GGTAGCTGAGGTGCACATTACAGTGTTGTCAGCt > 1:279232/2‑149 (MQ=255) ccGCCAGCGTGCTGGCGGCGCCCAGGCCTTTGACAAACGTACGGCGGGAGGGGTTGCGCAACATGGCGAGGCCTCATGCGGAATAGCCACGATGTTCGCTGCCGCCTGCTGTCA‑GGTAGCTGAGGTGCACATTACAGTGTTGTCAGCtt > 2:299569/1‑149 (MQ=255) cGCCAGCACGCTGGCGGCGCCCAGGCCTTTGACAAACGTACGGCGGGAGGGGTTGCGCAACATGGCGAGGCCTCATGCGGAATAGCCACGATGTTCGCTGCCGCCTGCTGTCA‑GGTAGCTGAGGTGCACATTACAGTGTTGTCAGCTtg < 8:30916/149‑1 (MQ=255) cAGCGTGCTGGCGGCGCCCAGGCCTTTGACAAACGTACGGCGGGAGGGGTTGCGCAACATGGCGAGGCCTCATGCGGAATAGCCACGATGTTCGCTGCCGCCTGCTGTCA‑GGTAGCTGAGGTGCACATTACAGTGTTGTCAGCTtgctg < 7:145572/149‑1 (MQ=255) tGCTGGCGGCGCCCAGGCCTTTGACAAACGTACGGCGGGAGGGGTTGCGCAACATGGCGAGGCCTCATGCGGAATAGCCACGATGTTCGCTGCCGCCTGCTGTCACGGTAGCTGAGGTGCACATTACAGTGTTGTCAGCTTGCTGCTtc < 1:66144/149‑1 (MQ=255) | GTTGACGGTCAGTGCGGTACGCGGTCGGCCTGTGATGTTGACCGGAGTCTGGCCAATGAACAGCTCGAAATGCTGGCCGGCCAGGTCTCGGCCTTCAGCGGCCTGGACCAGCGGGCGCCACAGACCCAGGC‑CCGCCAGCGTGCTGGCGGCGCCCAGGCCTTTGACAAACGTACGGCGGGAGGGGTTGCGCAACATGGCGAGGCCTCATGCGGAATAGCCACGATGTTCGCTGCCGCCTGCTGTCA‑GGTAGCTGAGGTGCACATTACAGTGTTGTCAGCTTGCTGCTTC > NC_002947/2511536‑2511823 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |