Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 2,907,697 | G→T | 10.0% | P333Q (CCG→CAG) | hasE ← | secretion metalloprotease |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 2,907,697 | 0 | G | T | 10.0% | 143.9 / 7.1 | 50 | P333Q (CCG→CAG) | hasE | secretion metalloprotease |
Reads supporting (aligned to +/- strand): ref base G (21/23); new base T (2/3); total (24/26) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.03e-01 |
GGCGGAAATGGTTTTTACCCGGCCGGGAATGTTCGGCGTCTGCGCATGGTTGAAGGCCGGGAAGGCGATGTCCACGGCAAGGCCTGGGACCATCTTGTC‑GATCGCCTGCACCGGGATCATCGCATCGACCTGCAGCGGCTGGTCGAGCGGTACCACTTCCATGATCTTGGCCCCGGGCTGGATGATGCCGCCGACCGTGGCGATGCTCAGGCCCTGGACCATGCCGTCGATCGGCGAGCGGATCACCGTGTGGGTCACTTCATAGTCCAGTGCGC > NC_002947/2907561‑2907835 | ggcggAAATGGTTTTTACCCGGCCGGGAATGTTCGGCGTCTGCGCATGGTTGAAGGCCGGGAAGGCGATGTCCACGGCAAGGCCTGGGACCATCTTGTC‑GATCGCCTGCACCGGGATCATCGCATCGACCTGCAGCGGCTGGTCGAGc < 4:329218/148‑1 (MQ=255) ggcggAAATGGTTTTTACCCGGCCGGGAATGTTCGGCGTCTGCGCATGGTTGAAGGCCGGGAAGGCGATGTCCACGGCAAGGCCTGGGACCATCTTGTC‑GATCGCCTGCACCGGGATCATCGCATCGACCTGCAGCGGCTGGTCGAGCg > 8:38171/1‑149 (MQ=255) ggcggAAATGGTTTTTACCCGGCCGGGAATGTTCGGCGTCTGCGCATGGTTGAAGGCCGGGAAGGCGATGTCCACGGCAAGGCCTGGGACCATCTTGTC‑GATCGCCTGCACCGGGATCATCGCATCGACCAGCCGCTGCAGGTCGatgc < 3:76528/149‑4 (MQ=255) ggcggAAATGGTTTTTACCCGGCCGGGAATGTTCGGCGTCTGCGCATGGTTGAAGGCCGGGAAGGCGATGTCCACGGCAAGGCCTGGGACCATCTTGTC‑GATCGCCTGCACCGGGATCATCGCATCGACCAGCCGCTGCAGGTCGatg < 2:121266/148‑3 (MQ=255) tttACCCGGCCGGGAATGTTCGGCGTCTGCGCATGGTTGAAGGCCGGGAAGGCGATGTCCACGGCAAGGCCTGGGACCATCTTGTC‑GATCGCCTGCACCGGGATCATCGCATCGACCTGCAGCGGCTGGGCGAGCGGTACCACTTCCAt > 6:280433/1‑149 (MQ=255) cccGGCCGGGAATGTTCGGCGTCTGCGCATGGTTGAAGGCCGGGAAGGCGATGTCCACGGCAAGGCCTGGGACCATCTTGTC‑GATCGCCTGCACCGGGATCATCGCATCGACCTGCAGCGGCTGGTCGAGCGGTACCACTTCCATGAt < 7:38171/148‑1 (MQ=255) cccGGCCGGGAATGTTCGGCGTCTGCGCATGGTTGAAGGCCGGGAAGGCGATGTCCACGGCAAGGCCTGGGACCATCTTGTC‑GATCGCCTGCACCGGGATCATCGCATCGACCTGCAGCGGCTGGTCGAGCGGTACCACTTCCATGATc > 1:229002/1‑149 (MQ=255) cccGGCCGGGAATGTTCGGCGTCTGCGCATGGTTGAAGGCCGGGAAGGCGATGTCCACGGCAAGGCCTGGGACCATCTTGTC‑GATCGCCTGCACCGGGATCATCGCATCGACCTGCAGCGGCTGGTCGAGCGGTACCACTTCCATGATc < 2:229002/149‑1 (MQ=255) ctgCGTCTGCGCATGGTTGAAGGCCTGGAAGGCGATGTCCACGGCAAGGCCTGGGACCATCTTGTC‑GATCGCCTGCACCGGGATCATCGCATCGACCTGCAGCGGCTGGTCGAGCGGTACCACTTCCATGATCTTGGCCCCGGGCTgg < 7:159828/146‑1 (MQ=255) ggcggcTGCGCTTGGTTGAAGGCCGGGAAGGCGATGTCCACTGCAAGGCCTGGGACCATCTTGTC‑GATCGCCTGCACCGGGATCATCGCATCGAGCTGCAGCGGCTGGTCGAGCGGTACCACTTCCATGATCTTGGCCCCGGGCTGgat < 4:54461/149‑1 (MQ=255) ggCGTCTGCGCATGGTTGAAGGCCGGGAAGGCGATGTCCACGGCAATGCCTGGGACCATCTTGTC‑GATCGCCTGCACCGGGATCATCGCATCGACCTGCAGCGGCTGGTCGAGCGGTACCACTTCCATGATCTTGGCCCCGGGCTGga < 4:291385/148‑1 (MQ=255) gCGTCTGCGCATGGTTGACGGCCGGGAAGGCGATGTCCACGGCAAGGCCTGGGACCATCTTGTC‑GATCGCCTGCACCGGGATCATCGCATCGACCTGCAGCGGCTGGTCGAGCGGTACCACTTCCATGATCTTGGCCCCGGGCTGgatg < 2:282948/149‑1 (MQ=255) gTCTGCGCATGGTTGAAGGCCGGGAAGGCGATGTCCACGGCAAGGCCTGGGACCATCTTGTC‑GATCGCCTGCACCGGGATCATCGCATCGACCTGCAGCGGCTGGTCGAGCGGTACCACTTCCATGATCTTGGCCCCGGGCTGgatgat < 5:37618/149‑1 (MQ=255) tCTGCGCATGGTTGAAGGCCGGGAAGGCGATGTCCACGGCAAGGCCTGGGACCATCTTGTC‑GATCGCCTGCACCGGGATCATCGCATCGACCTGCAGCGGCTGGTCGAGCGGTACCACTTCCATGATCTTGGCCCCGGGCTGGatgatg < 8:261455/149‑1 (MQ=255) ggTTGAAGGCCGGGAAGGCGATGTCCACGGCAAGGCCTGGGACCATCTTGTCGGATCGCCTGCACCGGGATCAACGCATCGCCCTGCAGCGGCTGGTCTAGCGGTACCACTTCAATGATCTTGGCCCCGGGCTGGATGATGCCGCCGAc > 1:90601/1‑149 (MQ=255) ttGAAGGCCGGGAAGGCGATGTCCACGGCAAGGCCTGGGACCATCTTGTC‑GATCGCCTGCACCGGGATCATCGCATCGACCTGCAGCGGCTGGTCGAGCGGTACCACTTCCa > 6:215645/1‑112 (MQ=255) ttGAAGGCCGGGAAGGCGATGTCCACGGCAAGGCCTGGGACCATCTTGTC‑GATCGCCTGCACCGGGATCATCGCATCGACCTGCAGCGGCTGGTCGAGCGGTACCACTTCCa < 5:215645/112‑1 (MQ=255) aaGGCCGGGAAGGCGATGTCCACGGCAAGGCCTGGGACCATCTTGTC‑GATCGCCTGCACCGGGATCATCGCATCGACCTGCAGCGGCTGGTCGAGCGGTACCACTTCCATGATCTTGGCCCCGGGCTGGATGATGCCGCCGACCGTgg < 4:33441/148‑1 (MQ=255) ggCCGGGAAGGCGATGTCCACGGCAAGGCCTGGGACCATCTTGTC‑GATCGCCTGCACCGGGATCATCGCATCGACCTGCAGCGGCTGGTCGAGCGGTACCACTTCCATGATCTTGGCCCCGGGCTGGATGATGCCGCCGACCGTGGCGa > 7:7869/1‑149 (MQ=255) gCCGGGAAGGCGATGTCCACGGCAAGGCCTGGGACCATCTTGTC‑GATCGCCTGCACCGGGATCATCGCATCGACCTGCAGCGGCTGGTCGAGCGGTACCACTTCCATGATCTTGGCCCCGGGCTGGATGATGCCGCCGACCGTGGCGAt > 3:295276/1‑149 (MQ=255) gggAAGGCGATGTCCACGGCAAGGCCTGGGACCATCTTGTC‑GATCGCCTGCACCGGGATCATCGCATCGACCTGCAGCGGCTGGTCGAGCGGTACCACTTCCATGATCTTGGCCCCGGGCTGGATGATGCCGCCGACCGTGGCGATGCt < 7:128567/149‑1 (MQ=255) gATGTCCACGGCAAGGCCTGGGACCATCTTGTC‑GATCGCCTGCACCGGGATCATCGCATCGACCTGCAGCGGCTGGTCGAGCGGTACCACTTCCATGAACTTGGCCCCGGGCTGGATGATGCCGCCGACCGTGGCGATGCTCAGGCCCt > 6:36062/1‑149 (MQ=255) gATGTCCACGGCAAGGCCTGGGACCATCTTGTC‑GATCGCCAGCACCGGGATCATCGCATCGACCTGCAGCCGCTGGTCGACCCGTACCACTTCCATGAACTTGGCCCCGGGCTCGATGAAGCCCCCGACCGAGGCGATGCTCAGGCACt > 6:30942/1‑149 (MQ=255) aTGTCCACGGCAAGGCCTGGGACCATCTTGTC‑GATCGCCTGCACCGGGATCATCGCATCGACCTGCAGCGGCTGGTCGAGCGGTACCACTTCCATGATCTTGGCCCCGGGCTGGATGATGCCGCCGACCGTGGCGATGCTCAGGCCCTg > 5:168093/1‑149 (MQ=255) tGTCCACGGCAAGGCCTGGGACCATCTTGTC‑GATCGCCTGCACCGGGATCATCGCATCGACCTGCAGCGGCTGGTCGAGCGGTACCACTTCCATGATCTTGGCCCCGGGCTGGATGATGCCGCCGACCGTGGCGATGCTCAGGCCCTgg < 8:7869/149‑1 (MQ=255) ccACGGCAAGGCCTGGGACCATCTTGTC‑GATCGCCTGCACCGGGATCATCGCATCGACCTGCAGCGGCTGGTCGAGCGGTACCACTTCCATGATCTCGGCCCCGGGCTGGATGATGCCGCCGACCGTGGCGATGCTCAGGCCCTGGAc > 3:121323/1‑148 (MQ=255) aCGGCAAGGCCTGGGACCATCTTGTC‑GATCGCCTGCACCGGGATCATCGCATCGACCTGCAGCGGCTGGTCGAGCGGTACCACTTCCATGATCTTGGCCCCGGGCTGGATGATGCCGCCGACCGTGGCGATGCTCAGGCCCTGGACCAt > 8:159943/1‑149 (MQ=255) cTGGGACCATCTTGTC‑GATCGCCTGTACCGGGATCATCGCATCGACCTGCAGCGGCTGGTCGAGCGGTACCACTTCCATGATCTTGGCCCCGGGCTGGATGATGCCGCCGACCGTGGCGATGCTCa < 2:200439/126‑1 (MQ=255) cTGGGACCATCTTGTC‑GATCGCCTGTACCGGGATCATCGCATCGACCTGCAGCGGCTGGTCGAGCGGTACCACTTCCATGATCTTGGCCCCGGGCTGGATGATGCCGCCGACCGTGGCGATGCTCa > 1:200439/1‑126 (MQ=255) tGGGACCATCTTGTC‑GATCGCCTGCACCGGGATCATCGCATCGACCTGCAGCGGCTGGTCGAGCGGTACCACTTCCATGATCTTGGCCCCGGGCTGGATGATGCCGCCGACCGTGGCGATGCTCAGGCCCTGGACCATGCCGTCGATCg > 3:138317/1‑149 (MQ=255) ggACCATCTTGTC‑GATCGCCTGCACCGGGATCATCGCATCGACCTGCAGCGGCTGGTCGAGCGGTACCACTTCCATGATCTTGGCCCCGGGCTGGATGATGCCGCCGACCGTGGCGATGCTCAGGCCCTg < 7:64288/130‑1 (MQ=255) ggACCATCTTGTC‑GATCGCCTGCACCGGGATCATCGCATAGACCTGCAGCGGCTGGTCGAGCGGTACCACTTCCATGATCTTGGCCCCGGGCTGGATGATGCCGCCGACCGTGGCGATGCTCAGGCCCTg > 8:64288/1‑130 (MQ=255) cATCTTGTC‑GATCGCCTGCACCGGGATCATCGCATCGACCTGCAGCGGCTGGTCGAGCGGTACCACTTCCATGATCTTGGCCCCGGGCTGGATGATGCCGCCGACCGTGGCGATGCTCAGGCCCTGGACCATGCCGTCGATCGGCGAGc < 5:111799/149‑1 (MQ=255) tCTTGTC‑GATCGCCTGCACCGGGATCATCGCATCGACCTGCAGCGGCTGGTCGAGCGGTACCACTTCCATGATCTTGGCCCCGGGCTGGATGATGCCGCCGACCGTGGCGATGCTCAGGCCCTGGACCATGCCGTCGATCGGCGAGCg > 1:238338/1‑148 (MQ=255) gTC‑GATCGCCTGCACCGGGATCATCGCATCGACCTGCAGCGGCTGGTCGAGCGGTACCACTTCCATGATCTTGGCCCCGGGCTGGATGATGCCGCCGACCGTGGCGATGCTCAGGCCCTGGACCATGCCGTCGATCGGCGAGCGGAt < 2:238338/147‑1 (MQ=255) aTCGCCTGCACCGGGATCATCGCATCGACCTGCAGCGGCTGGTCGAGCGGTACCACTTCCATGATCTTGGCCCCGGGCTGGATGATGCCGCCGACCGTGGCGATGCTCAGGCCCTGGACCATGCCGTCGATCGGCGAGCGGATCACCgt < 2:69763/149‑1 (MQ=255) aTCGCCTGCACCGGGATCATCGCATCGACCTGCAGCGGCTGGTCGAGCGGTACCACTTCCATGATCTTGGCCCCGGGCTGGATGATGCCGCCGACCGTGGCGATGCTCAGGCCCTGGACCATGCCGTCGATCGGCGAGCGGATCACCgt > 4:122879/1‑149 (MQ=255) aCCGGGATCATCGCATCGACCTGCAGCGGCTGGTCGAGCGGTACCACTTCCATGATCTTGGCCCCGGGCTGGATGATGCCGCCGACCGTGGCGATGCTCAGGCCCTGGACCATGCCGTCGATCGGCGAGCGGATCACCGTGTGGGTCAc < 6:168093/149‑1 (MQ=255) cGGGATCATCGCATCGACCTGCAGCGGCTGGTCGAGCGGTACCACTTCCATGATCTTGGCCCCGGGCTGGATGATGCCGCCGACCGTGGCGATGCTCAGGCCCTGGACCATGCCGTCGATCGGCGAGCGGATCACCGTGTgg > 2:22094/1‑142 (MQ=255) cGGGATCATCGCATCGACCTGCAGCGGCTGGTCGAGCGGTACCACTTCCATGATCTTGGCCCCGGGCTGGATGATGCCGCCGACCGTGGCGATGCTCAGGCCCTGGACCATGCCGTCGATCGGCGAGCGGATCACCGTGTgg < 1:22094/142‑1 (MQ=255) cGGGATCATCGCATCGACCTGCAGCGGCTGGTCGAGCGGTACCACTTCCATGATATTGGCCCCGGGCTGGATGATGCCGCCGACCGTGGCGATGCTCAGGCCCTGGACCATGCCGTCGATCGGCGAGCGGATCACCGTGTGGGTCACtt > 1:260428/1‑149 (MQ=255) ggATCATCGCATCGACCTGCAGCGGCTGGTCGAGCGGTACCACTTCCATGATCTTGGCCCCGGGCTGGATGATGCCGCCGACCGTGGCGATGCTCAGGCCCTGGACCATGCCGTCGATCGGCGAGCGGATCACCGTGTGGGTCACTTCa < 2:93790/149‑1 (MQ=255) cgcatcgACCTGCAGCGGCTGGTCGAGCGGTACCACTTCCATGATCTTGGCCCCGGGCTGGATGATGCCGCCGACCGTGGCGATGCTCAGGCCCTGGACCATGCCGTCGATCGGCGAGCGGATCACCGTGTGGGTCACTTCATAGTc > 8:186207/1‑147 (MQ=255) tcgACCAGCCGCTGCAGGTCGAGCGGTACCACTTTCATGATCTTGGCCCCGGGCTGGATGATGCCGCCGACCGTGGCGATGCTCAGGCCCTGGACCATGCCGTCGATCGGCGAGCGGATCACCGTGTgg < 7:19008/129‑1 (MQ=255) tcgACCAGCCGCTGCAGGTCGAGCGGTACCACTTTCATGATCTTGGCCCCGGGCTGGATGATGCCGCCGACCGTGGCGATGCTCAGGCCCTGGACCATGCCGTCGATCGGCGAGCGGATCACCGTGTgg > 8:19008/1‑129 (MQ=255) tcgACCAGCCGCTGCAGGTCGAGCGGTACCACTTCCATGATCTTGGCCCCGGGCTGGATGATGCCGCCGACCGTGGCGATGCTCAGGCCCTGGACCATGCCGTCGATCGGCGAGCGGATCACCGTGTGGGTCACTTCATAGTCCAGTgc > 4:214376/1‑149 (MQ=255) aCCTGCAGCGGCTGGTCGAGCGGTACCACTTCCATGATCTTGGCCCCGGGCTGGATGATGCCGCCGACCGTGGCGATGCTCAGGCCCTGGACCATGCCGTCGATCGGCGAGCGGAt > 7:64133/1‑116 (MQ=255) aCCTGCAGCGGCTGGTCGAGCGGTACCACTTCCATGATCTTGGCCCCGGGCTGGATGATGCCGCCGACCGTGGCGATGCTCAGGCCCTGGACCATGCCGTCGATCGGCGAGCGGAt < 8:64133/116‑1 (MQ=255) gCAGCGGCTGGTCGAGCGGTACCACTTCCATGATCTTGGCCCCGGGCTGGATGATGCCGCCGACCGTGGCGATGCTCAGGCCCTGGACCATGCCGTCGATCGGCGAGCGGATCACCGTGTGGGTCACTTCATAGTCCAGTgcgc > 7:189115/1‑144 (MQ=255) gCAGCGGCTGGTCGAGCGGTACCACTTCCATGATCTTGGCCCCGGGCTGGATGATGCCGCCGACCGTGGCGATGCTCAGGCCCTGGACCATGCCGTCGATCGGCGAGCGGATCACCGTGTGGGTCACTTCATAGTCCAGTgcgc < 8:189115/144‑1 (MQ=255) | GGCGGAAATGGTTTTTACCCGGCCGGGAATGTTCGGCGTCTGCGCATGGTTGAAGGCCGGGAAGGCGATGTCCACGGCAAGGCCTGGGACCATCTTGTC‑GATCGCCTGCACCGGGATCATCGCATCGACCTGCAGCGGCTGGTCGAGCGGTACCACTTCCATGATCTTGGCCCCGGGCTGGATGATGCCGCCGACCGTGGCGATGCTCAGGCCCTGGACCATGCCGTCGATCGGCGAGCGGATCACCGTGTGGGTCACTTCATAGTCCAGTGCGC > NC_002947/2907561‑2907835 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |