Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 2,923,326 | C→A | 8.5% | A643S (GCG→TCG) | PP_2563 ← | antibiotic biosynthesis protein |
Read alignment evidence... | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 2,923,326 | 0 | C | A | 8.5% | 144.3 / 2.4 | 47 | A643S (GCG→TCG) | PP_2563 | antibiotic biosynthesis protein |
Reads supporting (aligned to +/- strand): ref base C (26/17); new base A (2/2); total (28/19) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.65e-01 |
CAGCAGCAGCGATTGCCAGTGCAGCCGGGCGAATACCAGCTGGATCAATGCGCTGTACAACAGGGTTGGCACCACGATGGCTGTCAGTGGCCTGAGCAGCGTGCGTGCATCGCCACGCGCTTCGATGGCCTTGAGCTGAAAGCGCGCCAGGGCGATGCCGGAGACCAGGAACAGCACCGAGGTTTCGCCGAGTATCGGCCAGTGGTCGAAATCACCCAGGTGGCCGACCACAATCAGGATGATGGCGAGCATGCGGATGAACACCGGCATTTCCATTACCCGCCACGCGCCTTTG > NC_002947/2923180‑2923474 | cagcagcagCGATTGCCAGTGCAGCCGGGCGAATACCAGCTGTATCAATGCGCTGTACAACAGGGTTGGCACCACGATGGCTGTCAGTGGCCTGAGCAGCGTGCGTGCATCGCCACGCGCTTCGATGGCCTTGAGCTGAAAgcgcgc > 8:132891/1‑147 (MQ=255) cagcagcagCGATTGCCAGTGCAGCCGGGCGAATACCAGCTGGATCAATGCGCTGTACAACAGGGTTGGCACCACGATGGCTGTCAGTGGCCTGAGCAGCGTGCGTGCATCGCCACGCGCTTCGATGGCCTTGAGCTGAAAgcgcgc > 2:46125/1‑147 (MQ=255) cagcGATTGCCAGTGCAGCCGGGCGAATACCAGCTGGATCAATGCGCTGTACAACAGGGTTGGCACCACGATGGCTGTCAGTGGCCTGAGCAGCGTGCGTGCATCGCCACGCGCTTCGATGGCCTTGAGCTGAAAGCGCGCCAGggcga > 1:161319‑M2/1‑144 (MQ=255) agcGATTGCCAGTGCAGCCGGGCGAATACCAGCTGGATCAATGCGCTGTACAACAGGGTTGGCACCACGATGGCTGTCAGTGGCCTGAGCAGCGTGCGTGCATCGCCACGCGCTTCGATGGCCTTGAGCTGAAAGCGCGCCAGggcgat > 1:46125‑M2/1‑143 (MQ=255) gcGATTGCCAGTGCAGCCGGGCGAATACCAGCTGGATCAATGCGCTGTACAACAGGGTTGGCACCACGATGGCTGTCAGTGGCCTGAGCAGCGTGCGTGCATCGCCACGCGCTTCGATGGCCTTGAGCTGAAAGCGCGCCAGggcgatg > 2:304607‑M2/1‑142 (MQ=255) ccAGTGCAGCCGGGCGAATACCAGCTGGATCAATGCGCTGTACAACAGGGTTGGCACCACGATGGCTGTCAGTGGCCTGAGCAGCGTGCGTGCATCGCCACGCGCTTCGATGGCCTTGAGCTGAAAGCGCGCCAGGGCGATGCCGgaga < 7:175594/149‑1 (MQ=255) aGTGCAGCCGGGCGAATACCAGCTGGATCAATGCGCTGTACAACAGGGTTGGCACCACGATGGCTGTCAGTGGCCTGAGCAGCGTGCGTGCATCGCCACGCGCTTCGATGGCCTTGAGCTGAAAGCGCGCCAGGGCGATGCCGGAGAcc < 4:199426/149‑1 (MQ=255) aTACCAGCTGGATCAATGCGCTGTACAACAGGGTTGGCACCACGATGGCTGTCAGTGGCCTGAGCAGCGTGCGTGCATCGCCACGCGCTTCGATGGCCTTGAGCTGAAAGCGCGCCAGGGCGATGCCGGAGACCAGGAACAGCACCGAg > 2:56177/1‑149 (MQ=255) aTACCAGCTGGATCAATGCGCTGTACAACAGGGTTGGCACCACGATGGCTGTCAGTGGCCTGAGCAGCGTGCGTGCATCGCCACGCGCTTCGATGGCCTTGAGCTGAAAGCGCGCCAGGGCGATGCCGGAGACCAGGAACAGCACCGAg < 2:166659/149‑1 (MQ=255) cAGCTGGATCAATGCGCTGTACAACAGGGTTGGCACCACGATGGCTGTCAGTGGCCTGAGCAGCGTGCGTGCATCGCCACGCGCTTCGATGGCCTTGAGCTGAAAGCGCGCCAGGGCGATGCCGGAGACCAGGAACAGCACCGAGGttt > 7:19388/1‑149 (MQ=255) aTCAATGCGCTGTACAACAGGGTTGGCACCACGATGGCTGTCAGTGGCCTGAGCAGCGTGCGTGCATCGCCACGCGCTTCGATGGCCTTGAGCTGAAAGCGCGCCAGGGCGATGCCGGAGACCAGGAACAGCACCGAGGTTTCGCCGa < 2:42253/148‑1 (MQ=255) cAATGCGCTGTACAACAGGGTTGGCACCACGATGGCTGTCAGTGGCCTGAGCAGCGTGCGTGCATCGCCACGCGCTTCGATGGCCTTGAGCTGAAAGCGCGCCAGGGCGATGCCGGAGACCAGGCACAGCACCGAGGTTTCGCCGAGTa > 3:75262/1‑149 (MQ=255) aTGCGCTGTACAACAGGGTTGGCACCACGATGGCAGTCAGTGGCCTGAGCAGCGTGCGTGCATCGCCACGCGCTTCGATGGCCTTGAGCTGAAAGCGCGCCAGGGCGATGCCGGAGACCAGGAACAGCACCGAGGTTTCGCCGAGTATc > 1:225989/1‑149 (MQ=255) tGCGCTGTACAACAGGGTTGGCACCACGATGGCTGTCAGTGGCCTGAGCAGCGTGCGTGCATCGCCACGCGCTTCGATGGCCTTGAGCTGAAAGCGCGCCAGGGCGATGCCGGAGACCAGGAACAGCACCGAGGTTTCGCCGAGTATCg < 2:225989/149‑1 (MQ=255) aacaGGGTTGGCACCACGATGGCTGTCAGTGGCCTGAGCAGCGTGCGTGCATCGCCACGCGCTTCGATGGCCTTGAGCTGAAAGCGCGCCAGGGCGATGCCGGAGACCAGGAACAGCACCGAGGTTTCGCCGAGTATCgg > 5:19196/1‑140 (MQ=255) aacaGGGTTGGCACCACGATGGCTGTCAGTGGCCTGAGCAGCGTGCGTGCATCGCCACGCGCTTCGATGGCCTTGAGCTGAAAGCGCGCCAGGGCGATGCCGGAGACCAGGAACAGCACCGAGGTTTCGCCGAGTATCgg < 6:19196/140‑1 (MQ=255) aacaGGGTTGGCACCACGATGGCTGTCAGTGGCCTGAGCAGCGTGCGTGCATCGCCACGCGCTTCGATGGCCTTGAGCTGAAAGCGCGCCAGGGCGATGCCGGAGACCAGGAACAGCACCGAGGTTTCGCCGAGTATCGGCCAGTGGTc > 6:116407/1‑149 (MQ=255) aacaGGGTTGGCACCACGATGGCTGTCAGTGGCCTGAGCAGCGTGCGTGAATCGCCACTCGCTTCGATGGCCTTGAGCTGAAAGCGCGCCAGGGCGATGCCGGAGACCAGGAACAGCACCGAGGTTACGCCGAGTATCGGCCAGTggac > 1:14734/1‑147 (MQ=255) aGGGTTGGCACCACGATGGCTGTCAGTGGCCTGAGCAGCGTGCGTGCATCGCCACGCGCTTCGATGGCCTTGAGCTGAAAGCGCGCCAGGGCGATGCCGGAGACCAGGAACAGCACCGAGGTTTCGCCGAGTATCGGCCAGTGGTCGa > 6:18198/1‑148 (MQ=255) gCACCACGATGGCTGTCAGTGGCCTGAGCAGCGTGCGTGCATCGCCACGCGCTTCGATGGCCTTGAGCTGAAAGCGCGCCAGGGCGATGCCGGAGACCAGGAACAGCACCGAGGTTTCGCCGAGTATCGGCCAGTGGTCGAAATCAcc < 7:132891/148‑1 (MQ=255) accacGATGGCTGTCAGTGGCCTGAGCAGCGTGCGTGCATCGCCACGCGCTTCGATGGCCTTGAGCTGAAAGCGCGCCAGGGCGATGCCGGAGACCAGGAACAGCACCGAGGTTTCGCCGAGTATCGGCCAGTGGTCGAAATCACCCAg > 4:117190/1‑149 (MQ=255) cacGATGGCTGTCAGTGGCCTGAGCAGCGTGCGTGCATCGCCACGCGCTTCGATGGCCTTGAGCTGAAAGCGCGCCAGGGCGATGCCGGAGACCAGGAACAGCACCGAGGTTTCGCCGAGTATCGGCCAGTGGTCGAAATCACCCAGGt > 2:268010/1‑149 (MQ=255) acGATGGCTGTCAGTGGCCTGAGCAGCGTGCGTGCATCGCCACGCGCTTCGATGGCCTTGAGCTGAAAGCGCGCCAGGGCGATGCCGGAGACCAGGAACAGCACCGAGGTTTCGCCGAGTATCGGCCAGTGGTCGAAATCACCCAGGTg > 2:92303/1‑149 (MQ=255) aTGGCTGTCAGTGGCCTGAGCAGCGTGCGTGCATCGCCACGCGCTTCGATGGCCTTGAGCTGAAAGCGCGCCAGGGCGATGCCGGAGACCAGGAACAGCACCGAGGTTTCGCCGAGTATCGGCCAGTGGTCGAAATCACCCAGGTGGcc < 5:116407/149‑1 (MQ=255) tGTCAGTGGCCTGAGCAGCGTGCGTGCATCGCCACGCGCTTCGATGGCCTTGAGCTGAAAGCGCGCCAGGGCGATGCCGGAGACCAGGAACAGCACCGAGGTTTCGCCGAGTATCGGCCAGTGGTCGAAATCACCCAGGTGGCCGAcc > 1:312567/1‑148 (MQ=255) tGTCAGTGGCCTGAGCAGCGTGCGTGCATCGCCACGCGCTTCGATGGCCTTGAGCTGAAAGCGCGCCAGGGCGATGCCGGAGACCAGGAACAGCACCGAGGTTTCGCCGAGTATCGGCCAGTGGTCGAAATCACCCAGGTGGCCGACca > 2:316677/1‑149 (MQ=255) gTGGCCTGAGCAGCGTGCGTGCATCGCCACGCGCTTCGATGGCCTTGAGCTGAAAGCGCGCCAGGGCGATGCCGGAGACCAGGAACAGCACCGAGGTTTCGCCGAGTATCGGCCAGTGGTCGAAATCACCCAGGTGGCCGACCACAATc < 5:18198/149‑1 (MQ=255) ccTGAGCAGCGTGCGTGCATCGCCACGCGCTTCGATGGCCTTGAGCTGAAAGCGCGCCAGGGCGATGCCGGAGACCAGGAACAGCACCGAGGTTTCGCCGAGTATCGGCCAGTGGTCGAAATCACCCAGGTGGCCGACCACAATCAGga < 3:117190/149‑1 (MQ=255) cTGAGCAGCGTGGGTGTATCGCCACGCGCTTCGATGGCCTTGAGCTGAAAGCGCGCCAGGGCGATGCCGGAGACCAGGAACAGCACCGAGGTTTCGCCGAGTATCGGCCAGTGGTCGAAATCACCCAGGTGGCCGTCCACAATCAGgat < 2:14734/149‑1 (MQ=255) cgtgcgtgCATCGCCACGCGCTTCGATGGCCTTGAGCTGAAAGCGCGCCAGGGCGATGCCGGAGACCAGGAACAGCACCGAGGTTTCGCCGAGTATCGGCCAGTGGTCGAAATCACCCAGGTGGCCGACCACAATCAGGATGATGGc > 2:252183/1‑147 (MQ=255) cgtgcgtgCATCGCCACGCGCTTCGATGGCCTTGAGCTGAAAGCGCGCCAGGGCGATGCCGGAGACCAGGAACAGCACCGAGGTTTCGCCGAGTATCGGCCAGTGGTCGAAATCACCCAGGTGGCCGACCACAATCAGGATGATGGCGa < 1:268010/149‑1 (MQ=255) gtgcgtgcATCGCCACGCGCTTCGATGGCCTTGAGCTGAAAGCGCGCCAGggcgatgcacgcacgctgctcaggccactgacagccatcgtggtgccaaccctgttgtacagcgcattgatccagctggtattcgcccggctgcactgg < 5:22317‑M2/149‑100 (MQ=255) gtgcgtgcATCGCCACGCGCTTCGATGGCCTTGAGCTGAAAGCGCGCCAGGGCGATGCCGGAGACCAGGAACAGCACCGAGGTTTCGCCGAGTATCGGCCAGTGGTCGAAATCACCCAGGTGGCCGACCACAATCAGGATGATGGCGAg > 4:242622/1‑149 (MQ=255) tgcgtgcATCGCCACGCGCTTCGATGGCCTTGAGCTGAAAGCGCGACAGGGCGATGCCGGAGACCAGGAACAGCACCGAGGTTTCGCCGAGTATCGGCCAGTGGTCGAAATCACCCAGGTGGCCGACCACAATCAGGATGATGGCGAg > 2:272350/1‑148 (MQ=255) tgcgtgcATCGCCACGCGCTTCGATGGCCTTGAGCTGAAAGCGCGACAGGGCGATGCCGGAGACCAGGAACAGCACCGAGGTTTCGCCGAGTATCGGCCAGTGGTCGAAATCACCCAGGTGGCCGACCACAATCAGGATGATGGCGAg > 2:268125/1‑148 (MQ=255) gcgtgcATCGCCACGCGCTTCGATGGCCTTGAGCTGAAAGCGCGCCAGGGCGATGCCGGAGACCAGGAACAGCACCGAGGTTTCGCCGAGTATCGGCCAGTGGTCGAAATCACCCAGGTGGCCGACCACAATCAGGATGATGGCGAGCa > 2:221948/1‑149 (MQ=255) gcATCGCCACGCGCTTCGATGGCCTTGAGCTGAAAGCGCGCCAGGGCGATGCCGGAGACCAGGAACAGCACCGAGGTTTCGCCGAGTATCGGCCAGTGGTCGAAATCACCCAGGTGGCCGACCACAATCAGGATGATGGCGAGCATCCg > 5:10717/1‑149 (MQ=255) gcATCGCCACGCGCTTCGATGGCCTTGAGCTGAAAGCGCGCCAGGGCGATGCCGGAGACAAGGAACAGCACAGAGGTTTCGCCGAGTATCGGACAGTGGTCGAAATCAACCAGGTGGCAGACAACAATCAGGATGATGGCg > 1:246464/1‑141 (MQ=255) cATCGCCACGCGCTTCGATGGCCTTGAGCTGAAAGCGCGCCAGGGCGATGCCGGAGACCAGGAACAGCACCGAGGTTTCGCCGAGTATCGGCCAGTGGTCGAAATCACCCAGGTGGCCGACCACAATCAGGATGATGGCGAGCATGCgg < 2:312567/149‑1 (MQ=255) cACGCGCTTCGATGGCCTTGAGCTGAAAGCGCGCCAGggcgatgcacgcacgctgctcaggccactgacagccatcgtggtgccaaccctgttgtaca > 7:61795‑M2/1‑37 (MQ=255) cACGCGCTTCGATGGCCTTGAGCTGAAAGCGCGCCAGggcgatgcacgcacgctgctcaggccactgacagccatcgtggtgccaaccctgttgtaca < 8:61795‑M2/98‑62 (MQ=255) ccTTGAGCTGAAAGCGCGACAGGGCGATGCCGGAGACCAGGAACAGCACCGAGGTTTCGCCGAGTATCGGCCAGTGGTCGAAATCACCCAGGTGGCCGACCACAATCAGGATGATGGCGAGCATGCGGATGAACACCGGCATTTCCAtt < 1:272350/149‑1 (MQ=255) ccTTGAGCTGAAAGCGCGACAGGGCGATGCCGGAGACCAGGAACAGCACCGAGGTTTCGCCGAGTATCGGCCAGTGGTCGAAATCACCCAGGTGGCCGACCACAATCAGGATGATGGCGAGCATGCGGATGAACACCGGCATTTCCAtt < 1:268125/149‑1 (MQ=255) gAGCTGAAAGCGCGCCAGGGCGATGCCGGAGACCAGGAACAGCACCGAGGTTTCGCCGAGTATCGGCCAGTGGTCGAAATCACCCAGGTGGCCGACCACAATCAGGATGATGGCGAGCATGCGGATGAACACCGGCATTTCCATTAccc > 2:139644/1‑149 (MQ=255) aGCTGAAAGCGCGCCAGGGCGATGCCGGAGACCAGGAACAGCACCGAGGTTTCGCCGAGTATCGGCCAGTGGTCGAAATCACCCAGGTGGCCGACCACAATCa < 5:316300/103‑1 (MQ=255) aGCTGAAAGCGCGCCAGGGCGATGCCGGAGACCAGGAACAGCACCGAGGTTTCGCCGAGTATCGGCCAGTGGTCGAAATCACCCAGGTGGCCGACCACAATCa > 6:316300/1‑103 (MQ=255) tGAAAGCGCGCCAGGGCGATGCCGGAGACCAGGAACAGCACCGAGGTTTCGCCGAGTATCGGCCAGTGGTCGAAATCACCCAGGTGGCCGACCACAATCAGGATGATGGCGAGCATGCGGATGAACACCGGCATTTCCATTACCCGCCa > 2:237280/1‑149 (MQ=255) aaaGCGCGCCAGGGCGATGCCGGAGACCAGGAACAGCACCGAGGTTTCGCCGAGTATCGGCCAGTGGTCGAAATCACCCAGGTGGCCGACCACAATCAGGATGATGGCGAGCATGCGGATGAACACCg > 7:155070/1‑128 (MQ=255) aaaGCGCGCCAGGGCGATGCCGGAGACCAGGAACAGCACCGAGGTTTCGCCGAGTATCGGCCAGTGGTCGAAATCACCCAGGTGGCCGACCACAATCAGGATGATGGCGAGCATGCGGATGAACACCg < 8:155070/128‑1 (MQ=255) gcgcCAGGGCGATGCCGGAGACCAGGAACAGCACCGAGGTTTCGCCGAGTATCGGCCAGTGGTCGAAATCACCCAGGTGGCCGACCACAATCAGGATGATGGCGAGCATGCGGATGAACACCg < 4:19439/123‑1 (MQ=255) gcCAGGGCGATGCCGGAGACCAGGAACAGCACCGAGGTTTCGCCGAGTATCGGCCAGTGGTCGAAATCACCCAGGTGGCCGACCACAATCAGGATGATGGCGAGCATGCGGATGAACACCGGCATTTCCATTACCCGCCACGCGCCttt < 3:193882/149‑1 (MQ=255) ccAGGGCGATGCCGGAGACCAGGAACAGCACCGAGGTTTCGCCGAGTATCGGCCAGTGGTCGAAATCACCCAGGTGGCCGACCACAATCAGGATGATGGCGAGCATGCGGATGAACACCGGCATTTCCATTACCCGCCACGCGCCTTTg < 1:237280/149‑1 (MQ=255) | CAGCAGCAGCGATTGCCAGTGCAGCCGGGCGAATACCAGCTGGATCAATGCGCTGTACAACAGGGTTGGCACCACGATGGCTGTCAGTGGCCTGAGCAGCGTGCGTGCATCGCCACGCGCTTCGATGGCCTTGAGCTGAAAGCGCGCCAGGGCGATGCCGGAGACCAGGAACAGCACCGAGGTTTCGCCGAGTATCGGCCAGTGGTCGAAATCACCCAGGTGGCCGACCACAATCAGGATGATGGCGAGCATGCGGATGAACACCGGCATTTCCATTACCCGCCACGCGCCTTTG > NC_002947/2923180‑2923474 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |