| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 36,886 | T→C | 10.5% | Y256C (TAT→TGT) | PP_0033 ← | undecaprenyl‑glycosyl transferase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 36,886 | 0 | T | C | 10.5% | 96.6 / 2.7 | 38 | Y256C (TAT→TGT) | PP_0033 | undecaprenyl‑glycosyl transferase |
| Reads supporting (aligned to +/- strand): ref base T (18/16); new base C (2/2); total (20/18) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
CCACAGCCAGAGGTAGGCTTTGAAGCGCTGCATCGATCCACGCTTGCGGATCAACAGTGGTAGAAACAAGGCCCATGGCAGTAGCGACAATCCGAGCTGGATCCAGATGCTGCCGTACGGCTTGGCATGAGCACTACCATAGAGGTCCCCTGCCCAGTTACTGACGACGTAGCGGCTCCAGTGCTCACCAACGAAGAAGTACTCCATGAAGCCGGGCGTTTTCATCTCGGCCGCGACATACCATGGCACGGATATACCGAACATGAGTACAAGGCCGCTAATCCAGG > NC_002947/36747‑37033 | ccACAGCCAGAGGTAGGCTTTGAAGCGCTGCATCGATCCACGCTTGCGGATCAACAGTGGTAGAAACAAGGCCCATGGCAGTAGCGACAATCCGAGCTGGATCCAGATGCTGCCGTACGGCTTGGCATGAGCACTACCATAGAGGTccc < 5:340576/149‑1 (MQ=255) ccAGAGGTAGGCTTTGAAGCGCTGCATCGATCCACGCTTGCGGATCAACAGTGGTAGAAACAAGGCCCATGGCAGTAGCGACAATCCGAGCTGGATCCAGATGCTGCCGTACGGCTTGGCATGAGCACTACCATAGAGGTCCCCTGccc < 6:24504/149‑1 (MQ=255) gCTTTGAAGCGCTGCATCGATCCACGCTTGCGGATCAACAGTGGTAGAAACAAGGCCCATGGCAGTAGCGACAATCCGAGCTGGATCCAGATGCTGCCGTACGGCTTGGCATGAGCACTACCATAGAGGTCCCCTGCCCAGTTACTgac < 4:188583/149‑1 (MQ=255) gCTTTGAAGCGCTGCATCGATCCACGCTTGCGGATCAACAGTGGTAGAAACAAGGCCCATGGCAGAAGCGCAAATCCGAGCTGGATCCAGATGCTGCCGTCCGGCTTGGCATGAGCACTACCATACAGGTCCCCTGCCCAGTTACTgac > 7:281347/1‑149 (MQ=255) tttGAAGCGCTGCATCGATCCACGCTTGCGGATCAACAGTGGTAGAAACAAGGCCCATGGCAGTAGCGACAATCCGAGCTGGATCCAGATGCTGCCGTACGGCTTGGCATGAGCACTACCATag < 6:76519/124‑1 (MQ=255) tttGAAGCGCTGCATCGATCCACGCTTGCGGATCAACAGTGGTAGAAACAAGGCCCATGGCAGTAGCGACAATCCGAGCTGGATCCAGATGCTGCCGTACGGCTTGGCATGAGCACTACCATag > 5:76519/1‑124 (MQ=255) aGCGCTGCATCGATCCACGCTTGCGGATCAACAGTGGTAGAAACAAGGCCCATGGCAGTAGCGACAATCCGAGCTGGATCCAGATGCTGCCGTACGGCTTGGCATGAGCACTACCATAGAGGTCCCCTGCCCAGTTACTGACGACGTa < 6:340947/148‑1 (MQ=255) aTCGATCCACGCTTGCGGATCAACAGTGGTAGAAACAAGGCCCATGGCAGTAGCGACAATCCGAGCTGGATCCAGATGCTGCCGTACGGCTTGGCATGAGCACTACCATAGAGGTCCCCTGCCCAGTTACTGACGACGTAGCGGCTCCa < 8:49164/149‑1 (MQ=255) cACGCTTGCGGATCAACAGTGGTAGAAACAAGGCCCATGGCAGTAGCGACAATCCGAGCTGGATCCAGATGCTGCCGTACGGCTTGGCATGAGCACTACCATAGAGGTCCCCTGCCCAGTTACTGACGACGTAGCGGCTCCAGTGCTc < 4:46142/148‑1 (MQ=255) aGTGGTAGAAACAAGGCCCATGGCAGTAGCGACAATCCGAGCTGGATCCAGATGCTGCCGTACGGCTTGGCATGAGCACTACCACAGAGGTCCCCTGCCCAGTTACTg > 3:105761/1‑108 (MQ=255) aGTGGTAGAAACAAGGCCCATGGCAGTAGCGACAATCCGAGCTGGATCCAGATGCTGCCGTACGGCTTGGCATGAGCACTACCACAGAGGTCCCCTGCCCAGTTACTg < 4:105761/108‑1 (MQ=255) gTGGTAGAAACAAGGCCCATGGCAGTAGCGACAATCCGAGCTGGATCCAGATGCTGCCGTACGGCTTGGCATGAGCACTACCATAGAGGTCCCCTGCCCAGTTACTGACGACGTAGCGGCTCCAGTGCTCACCAACGAAGAAGTACTc > 2:124483/1‑148 (MQ=255) tGGTAGAAACAAGGCCCATGGCAGTAGCGACAATCCGAGCTGGATCCAGATGCTGCCGTACGGCTTGGCATGAGCACTACCATAGAGGTCCCCTGCCCAGTTACTGACGACGTAGCGGCTCCAGTGCTCACCAACGAAGAAGTACTCCa > 2:37620/1‑149 (MQ=255) tAGAAACAAGGCCCATGGCAGTAGCGACAATCCGAGCTGGATCCAGATGCTGCCGTACGGCTTGGCATGAGCACTACCATAGAGGTCCCCTGCCCAGTTACTGACGACGTAGCGGCTCCAGTGCTCACCAACGAAGAAGTACTCCATg > 5:64603/1‑148 (MQ=255) tAGAAACAAGGCCCATGGCAGTAGCGACAATCCGAGCTGGATCCAGATGCTGCCGTACGGCTTGGCATGAGCACTACCATAGAGGTCCCCTGCCCAGTTACTGACGACGTAGCGGCTCCAGTGCTCACCAACGAAGAAGTACTCCATg > 1:97616/1‑148 (MQ=255) tAGAAACAAGGCCCATGGCAGTAGCGACAATCCGAGCTGGATCCAGATGCTGCCGTACGGCTTGGCATGAGCACTACCACAGAGGTCCCCTGCCCAGTTACTGACGACGTAGCGGCTCCAGTGCTCACCAACGAAGAAGTACTCCATg > 8:32811/1‑148 (MQ=255) aaGGCCCATGGCAGTAGCGACAATCCGAGCTGGATCCAGATGCTGCCGTACGGCTTGGCATGAGCACTACCATAGAGGTCCCCTGCCCAGTTACTGACGACGTAGCGGCTCCAGTGCTCACCAACGAAGAAGTACTCCATGAAGCCggg < 6:64603/149‑1 (MQ=255) aTGGCAGTAGCGACAATCCGAGCTGGATCCAGATGCTGCCGTACGGCTTGGCATGAGCACTACCATAGAGGTCCCCTGCCCAGTTACTGACGACGTAGCGGCTCCAGTGCTCCCCAACGAAGAAGTACTCCATGAAGCCGGGCGtttt > 8:204813/1‑148 (MQ=255) gTAGCGACAATCCGAGCTGGATCCAGATGCTGCCGTACGGCTTGGCATGAGCACTACCATAGAGGTCCCCTGCCCAGTTACTGACGACGTAGCGGCTCCAGTGCTCACCAACGAAGAAGTACTCCATGAAGCCGGGCGTTTTCATCTCg > 4:212173/1‑149 (MQ=255) ccGAGCTGGATCCAGATGCTGCCGTACGGCTTGGCATGAGCACTACCATAGAGGTCCCCTGCCCAGTTACTGACGACGTAGCGGCTCCAGTGCTCACCAACGAAGAAGTACTCCATGAAGCCGGGCGTTTTCATCTCGGCCGCGACATa < 3:212173/149‑1 (MQ=255) gAGCTGGATCCAGATGCTGCGGTACGGCTTGGCATGAGCACTACCATAGAGGTCCCCTGCCCAGTTACTGACGACGTAGCGGCTCCAGTGCTCACCAACGAAGAAGTACTCCATGAAGCCGGGCGTTTTCATCTCGGCCGCGACATAc > 5:240929/1‑148 (MQ=255) ccAGATGCTGCCGTACGGCTTGGCATGAGCACTACCATAGAGGTCCCCTGCCCAGTTACTGACGACGTAGCGGCTCCAGTGCTCACCAACGAAGAAGTACTCCATGAAGCCGGGCGTTTTCATCTCGGCCGCGACATAACATGTCaag > 8:229272/1‑146 (MQ=255) cAGATGCTGCCGTACGGCTTGGCATGAGCACTACCATAGAGGTCCCCTGCCCAGTTACTGACGACGTAGCGGCTCCAGTGCTCACCAACGAAGAAGTACTCCATGAAGCCGGGCGTTTTCATCTCGGCCGCGACATACCATGGCACGGa < 7:229272/149‑1 (MQ=255) aGATGCTGCCGTACGGCTTGGCATGAGCACTACCATAGAGGTCCCCTGCCCAGTTACTGACGACGTAGCGGCTCCAGTGCTCACCAACGAAGAAGTACTCCATGAAGc > 4:196033/1‑108 (MQ=255) tgctgcCGTACGGCTTGGCATGAGCACTACCACAGAGGTCCCCTGCCCAGTTACTGACGACGTAGCGGCTCCAGTGCTCACCAACGAAGAAGTACTCCATGAAGCCGGGCGTTTTCATCTCGGCCGCGACATACCATGGCACGGAtata < 7:32811/149‑1 (MQ=255) ccGTACGGCTTGGCATGAGCACTACCATAGAGGTCCCCTGCCCAGTTACTGACGACGTAGCGGCTCCAGTGCTCACCAACGAAGAAGTACTCCATGAAGCCGGGCGTTTTCATCTCGGCCGCGACATACCATGGCACGGATATACCGaa < 1:124483/149‑1 (MQ=255) gTACGGCTTGGCATGAGCACTACCATAGAGGTCCCCTGCCCAGTTACTGACGACGTAGCGGCTCCAGTGCTCACCAACGAAGAAGTACTCCATGAAGCCGGGCGTTTTCATCTCGGCCGCGACATACCATGGCACGGATATACCGAACa > 8:32671/1‑149 (MQ=255) cGGCTTGGCATGAGCACTACCATAGAGGTCCCCTGCCCAGTTACTGACGACGTAGCGGCTCCAGTGCTCACCAACGAAGAAGTACTCCATGAAGCCGGGCGTTTTCATCTCGGCCGCGACATACCATGGCACGGat < 2:196050/136‑1 (MQ=255) cGGCTTGGCATGAGCACTACCATAGAGGACCCCTGCCCAGTTACTGACGACGTAGCGGCTCCAGTGCTCACCAACGAAGAAGTACTCCATGAAGCCGGGCGTTTTCATCTCGGCCGCGACATACCATGGCACGGat > 1:196050/1‑136 (MQ=255) ggCATGAGCACTACCATAGAGGTCCCCTGCCCAGTTACTGACGACGTAGCGGCTCCAGTGCTCACCAACgaag < 6:39083/73‑1 (MQ=255) ggCATGAGCACTACCATAGAGGTCCCCTGCCCAGTTACTGACGACGTAGCGGCTCCAGTGCTCACCAACgaag > 5:39083/1‑73 (MQ=255) ggCATGAGCACTACCATAGAGGTCCCCTGCCCAGTTACTGACGACGTAGCGGCTCCAGTGCTCACCAACGAAGAAGTACTCCATGAAGCCGGGCGTTTTCATCTCGGCCGCGACATACCATGGCACGGATATACCGAACATGAGTAc < 8:204419/147‑1 (MQ=255) gAGCACTACCATAGAGGTCCCCTGCCCAGTTACTGACGACGTAGCGGCTCCAGTGCTCACCAACGAAGAAGTACTCCATGAAGCCGGGCGTTTTCATCTCGGCCGCGACATACCATGGCACGGATATACCGAACATGAGTACAAGGCCg > 7:45574/1‑149 (MQ=255) aGCACTACCATAGAGGTCCCCTGCCCAGTTACTGACGACGTAGCGGCTCCAGTGCTCACCAACGAAGAAGTACTCCATGAAGCCGGGCGTTTTCATCTCGGCCGCGACATACCATGGCACGGATATACCGAACATGAGTACAAGGCCGc < 7:32671/149‑1 (MQ=255) tACCATAGAGGTCCCCTGCCCAGTTACTGACGACGTAGCGGCTCCAGTGCTCACCAACGAAGAAGTACTCCATGAAGCCGGGCGTTTTCATCTCGGCCGCGACATACCATGGCACGGATATACCGAACATGAGTACAAGGCCGCTAATc > 3:38253/1‑149 (MQ=255) ccATAGAGGTCCCCTGCCCAGTTACTGACGACGTAGCGGCTCCAGTGCTCACCAACGAAGAAGTACTCCATGAAGCCGGGCGTTTTCATCTCGGCCGCGACATACCATGGCACGGATATACCGAACATGAGTACAAGGCCGCTAATc > 2:133296/1‑147 (MQ=255) ccATAGAGGTCCCCTGCCCAGTTACTGACGACGTAGCGGCTCCAGTGCTCACCAACGAAGAAGTACTCCATGAAGCCGGGCGTTTTCATCTCGGCCGCGACATACCATGGCACGGATATACCGAACATGAGTACAAGGCCGCTAATc < 8:45574/147‑1 (MQ=255) aTAGAGGTCCCCTGCCCAGTTACTGACGACGTAGCGGCTCCAGTGCTCACCAACGAAGAAGTACTCCATGAAGCCGGGCGTTTTCATCTCGGCCGCGACATACCATGGCACGGATATACCGAACATGAGTACAAGGCCGCTAATCCAgg > 1:212386/1‑149 (MQ=255) | CCACAGCCAGAGGTAGGCTTTGAAGCGCTGCATCGATCCACGCTTGCGGATCAACAGTGGTAGAAACAAGGCCCATGGCAGTAGCGACAATCCGAGCTGGATCCAGATGCTGCCGTACGGCTTGGCATGAGCACTACCATAGAGGTCCCCTGCCCAGTTACTGACGACGTAGCGGCTCCAGTGCTCACCAACGAAGAAGTACTCCATGAAGCCGGGCGTTTTCATCTCGGCCGCGACATACCATGGCACGGATATACCGAACATGAGTACAAGGCCGCTAATCCAGG > NC_002947/36747‑37033 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |