Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_002947 3,118,279 G→T 7.4% H101Q (CAC→CAA cfa ← cyclopropane‑fatty‑acyl‑phospholipid synthase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0029473,118,2790GT 7.4% 166.7 / 3.8 54H101Q (CAC→CAAcfacyclopropane‑fatty‑acyl‑phospholipid synthase
Reads supporting (aligned to +/- strand):  ref base G (27/23);  new base T (2/2);  total (29/25)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 2.38e-01

CCTGCTCCAGTGTTTGCCCCGGGTGTTCGAATTGCGCAGCCGAATACATCATGGTGGGGTCCAGCAGCCGCTCGAACAGGGCATTGCCCAGGTCGTAGTGGGCCAGAATGTTGCGCCGGGCGCCGCGCTTGTCGTTGCGGTTGAGCCGGTGCAGCAGGCGCAGGGCAGGGCGGCCCAGGCGGGCCAGGCCACCCTCGAGCGCGTCGAGCACTTCAAGGTTGGCGACGAACAGGCGGGTCACCAGCGCCAGGTCGGGGCTGCGCCAATAGCCGTGAATGTAGGCTTCGCCAGCTC  >  NC_002947/3118131‑3118424
                                                                                                                                                    |                                                                                                                                                  
ccTGCTCCAGTGTTTGCCCCGGGTGTTCGAATTGCGCAGCCGAATACATCATGGTGGGGTCCAGCAGCCGCTCGAACAGGGCATTGCCCAGGTCGTAGTGGGCCAGAATGTTGCGCCGGGCGCCGCGCTTGTCGTTGCGGTTGAGCCgg                                                                                                                                                    >  3:117781/1‑149 (MQ=255)
 cTGCTCCAGTGTTTGCCCCGGGTGTTCGAATTGCGCAGCCGAATACATCATGGTGGGGTCCAGCAGCCGCTCGAACAGGGCATTGCCCAGGTCGTAGTGGGCCAGAATGTTGCGCCGGGCGCCGCGCTTGTCGTTGCGGTTGAGCCGGt                                                                                                                                                   >  7:275590/1‑149 (MQ=255)
 cTGCTCCAGTGTTTGCCCCGGGTGTTCGAATTGCGCAGCCGAATACATCATGGTGGGGTCCAGCAGCCGCTCGAACAGGGCATTGCCCAGGTCGTAGTGGGCCAGAATGTTGCGCCGGGCGCCGCGCTTGTCGTTGCGGTTGAGCCGGt                                                                                                                                                   >  2:196387/1‑149 (MQ=255)
    cTCCAGTGTTTGCCCCGGGGGTGCGAATTGCGCAGCCGAATACATCATGGGGGGGTCCAGCAGCCGCTCGAACAGGGCATTGCCCAGGTCGTAGTGGGCCAGAATGTTGCGCCGGGCGCCGCGCTTGTCGTTGCGGTTGAGCCGGTgca                                                                                                                                                <  2:124376/149‑1 (MQ=255)
       cAGTGTTTGCCCCGGGTGTTCGAATTGCGCAGCCGAATACATCATGGTGGGGTCCAGCAGCCGCTCGAACAGGGCATTGCCCAGGTCGTAGTGGGCCAGAATGTTGCGCCGGGCGCCGCGCTTGTCGTTGCGGTTGAGCCGGTgcag                                                                                                                                               >  5:307189/1‑147 (MQ=255)
       cAGTGTTAGCCCCGGGTGTTCGAATTGCGCAGCCGAATACATCATGGTGGGGTACAGCAGCAGCTCTAACAGGGCATTGCCCAGGTCGTAGTGGGCCAGAATGTTGCGCCGGGCGCCGCGCTTGTAGTTGCGGTTGAGCCGGTgcag                                                                                                                                               >  5:28955/1‑147 (MQ=255)
        aGTGTTTGCCCCGGGTGTTCGAATTGCGCAGCCGAATACATCATGGTGGGGTCCAGCAGCCGCTCGAACAGGGCATTGCCCAGGTCGTAGTGGGCAAGAATGTTGCGCCGGGCGCCGCGCTTGTCGTTGCGGTTGAGCCGGTGcagcag                                                                                                                                            <  1:262777/149‑1 (MQ=255)
         gtgtTTGCCCCGGGTGTTCGAATTGCGCAGCCGAATACATCATGGTGGGGTCCAGCAGCCGCTCGAACAGGGCATTGCCCAGGTCGTAGTGGGCCAGAATGTTGCGCCGGGCGCCGCGCTTGTCGTTGCGGTTGAGCCGGTGCAGCAgg                                                                                                                                           >  2:173469/1‑149 (MQ=255)
            tttGCCCCGGGTGTTCGAATTGCGCAGCCGAATACATCATGGTGGGGTCCAGCAGCCGCTCGAACAGGGCATTGCCCAGGTCGTAGTGGGCCAGAATGTTGCGCCGGGCGCCGCGCTTGTCGTTGCGGTTGAGCCGGTGCAGCAGgcg                                                                                                                                         <  2:19627/148‑1 (MQ=255)
               gCCCCGGGTGTTCGAATTGCGCAGCCGAATACATCATGGTGGGGTCCAGCAGCCGCTCGAACAGGGCATTGCCCAGGTCGTAGTGGGCCAGAATGTTGCGCCGGGCGCCGCGCTTGTCGTTGCGGTTGACCCGGTGCAGCAGGCgcagg                                                                                                                                     >  4:56058/1‑149 (MQ=255)
                  ccGGGTGTTCGAATTGCGCAGCCGAATACATCATGGTGGGGTCCAGCAGCCGCTCGAACAGGGCATTGCCCAGGTCGTAGTGGGCCAGAATGTTGCGCCGGGCGCCGCGCTTGTCGTTGCGGTTGAGCCGGTGCAGCAGGCgcagggca                                                                                                                                  <  8:275590/149‑1 (MQ=255)
                  ccGGGTGTTCGAATTGCGCAGCCGAATACATCATGGTGGGGTCCAGCAGCCGCTCGAACAGGGCATTGCCCAGGTCGTAGTGGGCCAGAATGTTGCGCCGGGCGCCGCGCTTGTCGTTGCGGTTGAGCCGGTGCAGCAGGCgcaggg                                                                                                                                    >  3:108656/1‑147 (MQ=255)
                            gAATTGCGCAGCCGAATACATCATGGTGGGGTCCAGCAGCCGCTCGAACAGGGCATTGCCCAGGTCGTAGTGGGCCAGAATGTTGCGCCGGGCGCCGCGCTTGTCGTTGCGGTTGAGCCGGTGCAGCAGGCgcagggcag                                                                                                                                 >  8:86849/1‑140 (MQ=255)
                            gAATTGCGCAGCCGAATACATCATGGTGGGGTCCAGCAGCCGCTCGAACAGGGCATTGCCCAGGTCGTAGTGGGCCAGAATGTTGCGCCGGGCGCCGCGCTTGTCGTTGCGGTTGAGCCGGTGCAGCAGGCgcagggcag                                                                                                                                 <  7:86849/140‑1 (MQ=255)
                            gAATTGCGCAGCCGAATACATCATGGTGGGGTCCAGCAGCCGCTCGAACAGGGCATTGCCCAGGTCGTAGTGGGCCAGAATGTTGCGCCGGGCGCCGCGCTTGTCGTTGCGGTTGAGCCGGTGCAGCAGGCGCAGGGCAGGGCGGcc                                                                                                                          >  4:125202/1‑147 (MQ=255)
                            gAAGTGCGCAGCCGACTACCTCATGGGGGGGTCCAGCAGCCGCTCGAACAGGGCATTGCCCAGGTCGTAGTGGGCCAGAAGGTTGCGCCGGGCGCCGCGCTTGTCGTTGCGGTTGAGCCGGTGCAGCAGGCGCAGGGCAGGGCGGccc                                                                                                                         <  8:193902/148‑1 (MQ=255)
                                  cgcAGCCGAATACATCATGGTGGGGTCCAGCAGCCGCTCGAACAGGGCATTGCCCAGGTCGTAGTGGGCCAGAATGTTGCGCCGGGCGCCGCGCTTGTCGTTGCGGTTGAGCCGGTGCAGGAGGCGCAGGGCAGGGCGGcccgcctggg                                                                                                                  <  1:196387/149‑8 (MQ=255)
                                         gAATACATCATGGTGGGGTCCAGCAGCCGCTCGAACAGGGCATTGCCCAGGTCGTAGTGGGCCAGAATGTTGCGCCGGGCGCCGCGCTTGTCGTTGCGGTTGAGCCGGTGCAGCAGGCGCAGGGCAGGGCGGCCCAGGCGggccaggcc                                                                                                           >  3:5941/1‑149 (MQ=255)
                                         gAATACATCATGGTGGGGTCCAGCAGCCGCTCGAACAGGGCATTGCCCAGGTCGTAGTGGGCCAGAATGTTGCGCCGGGCGCCGCGCTTGTCGTTGCGGTTGAGCCGGTGCAGCAGGCGCAGGGCAGGGCGGCCCAGGCGggccaggc                                                                                                            >  3:151383/1‑148 (MQ=255)
                                         gAATACATCATGGTGGGGTCCAGCAGCCGCTCGAACAGGGCATTGCCCAGGTCGTAGTGGGCCAGAATGTTGCGCCGGGCGCCGCGCTTGTCGTTGCGGTTGAGCCGGTGCAGCAGGCGCAGGGCAGGGCGGCCCAGGCGggccaggc                                                                                                            >  8:313973/1‑148 (MQ=255)
                                                tcatGGTGGGGTCCAGCAGCCGCTCGAACAGGGCATTGCCCAGGTCGTAGTGGGCCAGAATGTTGCGCCGGGCGCCGGGCTTGTCGTTGCGGTTGAGCCGGTGCAGCAGGCGCAGGGCAGGGCGGCCCAGGCGGGCCAGGCCACCCTc                                                                                                     >  1:109979/1‑148 (MQ=255)
                                                  atGGTGGGGTCCAGCAGCCGCTCGAACAGGGCATTGCCCAGGTCGTAGTGGGCCAGAATGTTGCGCCGGGCGCCGCGCTTGTCGTTGCGGTTGAGCCGGTGCAGCAGGCGCAGGGCAGGGCGGCCCAGGCGGGCCAGGCCACCCTCGa                                                                                                   <  4:108656/148‑1 (MQ=255)
                                                  agggtggGGTCCAGCAGCCGCTCGAACAGTGCATTGCCCTGGTCGTAGTGTGCCAGAATGTTGCTCCGGGCGCCGCGCTTGTCTTTGCGGTTTAGCCGGTGAAGAAGGCGCAGGGCAGGGCGGCCCAGGCGGGCAAGGCCACCCTAGa                                                                                                   <  6:28955/146‑1 (MQ=255)
                                                   tggtggGGTCCAGCAGCCGCTCGAACAGGGCATTGCCCAGGTCGTAGTGGGCCAGAATGTTGCGCCGGGCGCCGCGCTTGTCGTTGCGGTTGAGCCGGTGCAGCAGGCGCAGGGCAGGGCGGCCCAGGCGGGCCAGGCCACCCTCGAgc                                                                                                 <  4:309442/149‑1 (MQ=255)
                                                                  gcCGCTCGAACAGGGCATTGCCCAGGTCGTAGTGGGCCAGAATGTTGCGCCGGGCGCCGCGCTTGTCGTTGCGGTTGAACCGGTGCAGCAGGCGCAGGGCAGGGCGGCCCAGGCGGGCCAGGCCACCCTCGAGCGCGTCGAGCACTTCa                                                                                  <  3:56058/149‑1 (MQ=255)
                                                                     gCTCGAACAGGGCATTGCCCAGGTCGTAGTGGGCCAGAATGTTGCGCCGGGCGCCGCGCTTGTCGTTGCGGTTGAGCCGGTGCAGCAGGCGCAGGGCAGGGCGGCCCAGGCGGGCCAGGCCACCCTCGAGCGCGTCGAGCACTTCAAgg                                                                               <  4:151383/149‑1 (MQ=255)
                                                                       tCGAACAGGGCATTGCCCAGGTCGTAGTGGGCCAGAATGTTGCGACGGGCGCCGCGCTTGTCGTTGCGGTTGAGCCGGTGCAGCAGGCGCAGGGCAGGGCGGCCCAGGCGTGCCAGGCCACCCTCGAGCGCGTCGAGCACTTCAAGGtt                                                                            >  5:229348/1‑149 (MQ=255)
                                                                         caaCTGGGCATTGACCATGGCGTACTGGGGCAGAATGTTGCGCCGGGGGCCGCGCTTGTCGTTGCGGTTGAGCCGGTGCAGCAGGCGCAGGGCAGGGCGGCCCAGTCGGGCCAGGCCAGCCTCGAGCGCTTCGAGCACTTCAAGGtttg                                                                          <  6:229328/148‑3 (MQ=255)
                                                                            cAGGGCATTGCCCAGGTCGTAGTGGGCCAGAATGTTGCGCCGGGCGCCGCGCTTGTCGTTGCGGTTGAGCCGGTGCAGCAGGCGCAGGGCAGGGCGGCCCAGGCGGGCCAGGCCACCCTCGAGCGCGTCGAGCACTTCAAGGTTGGcga                                                                       <  8:212765/149‑1 (MQ=255)
                                                                             aGGGCATTGCCCAGGTCGTAGTGGGCCAGAATGTTGCGCCGGGCGCCGCGCTTGTCGTTGCGGTTGAGCCGGTGCAGCAGGCGCAGGGCAGGGCGGCCCAGGCGGGCCAGGCCACCCTCGAGCGCGTCGAGCACTTCAAGGTTGGcgac                                                                      <  3:266779/149‑1 (MQ=255)
                                                                              gggCATTGCCCAGGTCGTAGTGGGCCAGAATGTTGCGCCGGGCGCCGCGCTTGTCGTTGCGGTTGAGCCGGTGCAGCAGGCGCAGGGCAGGGCGGCCCAGGCGGGCCAGGCCACCCTCGAGCGCGTCGAGCACTTCAAGGTTg                                                                           <  8:256080/143‑1 (MQ=255)
                                                                              gggCATTGCCCAGGTCGTAGTGGGCCAGAATGTTGCGCCGGGCGCCGCGCTTGTCGTTGCGGTTGAGCCGGTGCAGCAGGCGCAGGGCAGGGCGGCCCAGGCGGGCCAGGCCACCCTCGAGCGCGTCGAGCACTTCAAGGTTg                                                                           >  7:256080/1‑143 (MQ=255)
                                                                               ggCATTGCCCAGGTCGTAGTGGGCCAGAATGTTGCGCCGGGCGCCGCGCTTGTCGTTGCGGTTGAGCCGGTgca                                                                                                                                                >  6:111445/1‑74 (MQ=255)
                                                                               ggCATTGCCCAGGTCGTAGTGGGCCAGAATGTTGCGCCGGGCGCCGCGCTTGTCGTTGCGGTTGAGCCGGTgca                                                                                                                                                <  5:111445/74‑1 (MQ=255)
                                                                               ggCATTGCCCAGGTCGTAGTGGGCCAGAATGTTGCGCCGGGCGCCGCGCTTGTCGTTGCGGTTGAGCCGGTGCAGCAGGCGCAGGGCAGGGCGGCCCAGGCGGGCCAGGCCACCCTCGAGCGCGTCGAGCACTTCAAGGTTGGcgacg                                                                     >  3:88528/1‑148 (MQ=255)
                                                                                       ccAGGTCGTAGTGGGCCAGAATGTTGCGCCGGGCGCCGCGCTTGTCGTTGCGGTTGAGCCGGTGCAGCAGGCGCAGGGCAGGGCGGCCCAGGCGGGCCAGGCCACCCTCGAGCGCGTCGAGCACTTCAAGGTTGGCGACGAACAGGCgg                                                            <  6:307189/149‑1 (MQ=255)
                                                                                       ccAGGTCGTAGTGGGCCAGAATGTTGCGCCGGGCGCCGCGCTTGTCGTTGCGGTTGAGCCGGTGCAGCAGGCGCAGGGCAGGGCGGCCCAGGCGGGCCAGGCCACCCTCGAGCGCGTCGAGCACTTCAAGGTTGGCGACGAACAGGCgg                                                            >  6:72503/1‑149 (MQ=255)
                                                                                       ccAGGTCGTAGTGGGCCAGAATGTTGCGCCGGGCGCCGCGCTTGTCGTTGCGGTTGAGCCGGTGCAGCAGGCGCAGGGCAGGGCGGCCCAGGCGGGCCAGGCCACCCTCGAGCGCGTCGAGCACTTCAAGGTTGGCGACGAACAGGCgg                                                            <  7:313973/149‑1 (MQ=255)
                                                                                         aGGTCGTAGTGGGCCAGAATGTTGCGCCGGGCGCCGCGCTTGTCGTTGCGGTTGAGCCGGTGCAGCAGGCGCAGGGCAGGGCGGCCCAGGCGGGCCAGGCCACCCTCGAGCGCGTCGAGCACTTCAAGGTTGGCGACGAACAGGCGGGt                                                          >  2:54961/1‑149 (MQ=255)
                                                                                           gTCGTAGTGGGCCAGAATGTTGCGCCGGGCGCCGCGCTTGTCGTTGCGGTTGAGCCGGTGCAGCAGGCGCAGGGCAGGGCGGCCCAGGCGGGCCAGGCCACCCTCGAGCGCGTCGAGCACTTCAAGGTTGGCGACGAACAGGCGGGTCa                                                        >  2:267357/1‑149 (MQ=255)
                                                                                              gTAGTGGGCCAGAATGTTGCGCCGGGCGCCGCGCTTGTCGTTGCGGTTGAGCCGGTGCAGCAGGCGCAGGGCAGGGCGGCCCAGGCGGGCCAGGCCACCCTCGAGCGCGTCGAGCACTTCAAGGTTGGCGACGAACAGGCGGGTCAcc                                                      <  1:173469/148‑1 (MQ=255)
                                                                                                    ggCCAGAATGTTGCGCCGGGCGCCGCGCTTGTCGTTGCGGTTGAGCCGTTGCAGCAGGCGCAGGGCAGGGCGGCCCAGGCGGGCCAGGCCACCCTCGAGCGCGTCGAGCACTTCAAGGTTGGCGACGAACAGGCGGGTCACCAgcgc                                                 >  8:6822/1‑147 (MQ=255)
                                                                                                    ggCCAGAATGTTGCGCCGGGCGCCGCGCTTGTCGTTGCGGTTGAGCCGTTGCAGCAGGCGCAGGGCAGGGCGGCCCAGGCGGGCCAGGCCACCCTCGAGCGCGTCGAGCACTTCAAGGTTGGCGACGAACAGGCGGGTCACCAgcgc                                                 >  8:1817/1‑147 (MQ=255)
                                                                                                    ggCCAGAATGTTGCGCCGGGCGCCGCGCTTGTCGTTGCGGTTGAGCCGGTGCAGCAGGCGCAGGGCAGGGCGGCCCAGGCGGGCCAGGCCACCCTCGAGCGCGTCGAGCACTTCAAGGTTGGCGACGAACAGGCGGGTCACCAGCGcc                                                <  2:74381/148‑1 (MQ=255)
                                                                                                    ggCCAGAATGTTGCGCCGGGCGCCGCGCTTGTCGTTGCGGTTGAGCCGGTGCAGCAGGCGCAGGGCAGGGCGGCCCAGGCGGGCCAGGCCACCCTCGAGCGCGTCGAGCACTTCAAGGTTGGCGACGAACAGGCGGGTCACCAGCGcc                                                >  1:74381/1‑148 (MQ=255)
                                                                                                         gAATGTTGCGCCGGGCGCCGCGCTTGTCGTTGCGGTTGAGCCGGTGCAGCAGGCGCAGGGCAGGGCGGCCCAGGCGGGCCAGGCCACCCTCGAGCGCGTCGAGCACTTCAAGGTTGGCGACGAACAGGCGGGTCACCAGCGCCAGGTCg                                          >  5:14885/1‑149 (MQ=255)
                                                                                                            tGTTGCGCCGGGCGCCGCGCTTGTCGTTGCGGTTGAGCCGTTGCAGCAGGCGCAGGGCAGGGCGGCCCAGGCGGGCCAGGCCACCCTCGAGCGCGTCGAGCACTTCAAGGTTGGCGACGAACAGGCGGGTCACCAGCGCCAGGTCgggg                                       <  7:6822/149‑1 (MQ=255)
                                                                                                            tGTTGCGCCGGGCGCCGCGCTTGTCGTTGCGGTTGAGCCGTTGCAGCAGGCGCAGGGCAGGGCGGCCCAGGCGGGCCAGGCCACCCTCGAGCGCGTCGAGCACTTCAAGGTTGGCGACGAACAGGCGGGTCACCAGCGCCAGGTCgggg                                       <  7:1817/149‑1 (MQ=255)
                                                                                                                           cgcgCTTGTCGTTGCGGTTGAGCCGGTGCAGCAGGCGCAGGGCAGGGCGGCCCAGGCGGGCCAGGCCACCCTCGAGCGCGTCGAGCACTTCAAGGTTGGCGACGAACAGGCGGGTCACCAGCGCCAGGTCGGGGCTGCGCCAATAGCCg                        >  3:180896/1‑149 (MQ=255)
                                                                                                                           cgcgCTTGTCGTTGCGGTTGAGCCGGTGCAGCAGGCGCAGGGCAGGGCGGCCCAGGCGGGACATGACACACTAGAGCGCGTCGAGCACTTCAAGGTTGGCGACGAACAGGCGGGTCACCAGCTCCAGGTCGGGGCTGCGCCACTAGACg                        >  3:185436/1‑149 (MQ=255)
                                                                                                                              gcTTGTCGTTGCGGTTGAGCCGGTGCAGCAGGCGCAGGGCAGGGCGGCCCAGGCGGGCCAGGCCACCCTCGAGCGCGTCGAGCACTTCAAGGTCTGGCGACGAACAGGCGGGTCACCAGCGCCAGGTCGGGGCTGCGCCAATAGCCGTg                      <  1:267357/149‑1 (MQ=255)
                                                                                                                                   tCGTTGCGGTTGAGCCGGTGCAGCAGGCGCAGGGCAGGGCGGCCCAGGCGGGCCAGGCCACCCTCGAGCGCGTCGAGCACTTCAAGGTTGGCGACGAACAGGCGGGTCACCAGCGCCAGGTCGGGGCTGCGCCAATAGCCGTGAATGt                 <  3:125202/148‑1 (MQ=255)
                                                                                                                                               aGCCGGTGCAGCAGGCGCAGGGCAGGGCGGCCCAGGCGGGCCAGGCCACCCTCGAGCGCGTCGAGCACTTCAAGGTTGGCGACGAACAGGCGGGTCACCAGCGCCAGGTCGGGGCTGCGCCAATAGCCGTGAATGTAGGCTTCGCCAg     >  7:14926/1‑148 (MQ=255)
                                                                                                                                                gCCGGTGCAGCAGGCGCAGGGCAGGGCGGCCCAGGCGGGCCAGGCCACCCTCGAGCGCGTCGAGCACTTCAAGGTTGGCGACGAACAGGCGGGTCACCAGCGCCAGGTCGGGGCTGCGCCAATAGCCGTGAATGTAGGCTTCGCCAGCt   >  7:247487/1‑149 (MQ=255)
                                                                                                                                                 ccGGTGCAGCAGGCGCAGGGCAGGGCGGCCCAGGCGGGCCAGGCCACCCTCGAGCGCGTCGAGCACTGCAAGGTTGGCGACGAACAGGCGGGTCACCAGCGCCAGGTCGGGGCTGCGCCAATAGCCGTGAATGTAGGCTTCGCCAGCTc  >  5:243303/1‑149 (MQ=255)
                                                                                                                                                    |                                                                                                                                                  
CCTGCTCCAGTGTTTGCCCCGGGTGTTCGAATTGCGCAGCCGAATACATCATGGTGGGGTCCAGCAGCCGCTCGAACAGGGCATTGCCCAGGTCGTAGTGGGCCAGAATGTTGCGCCGGGCGCCGCGCTTGTCGTTGCGGTTGAGCCGGTGCAGCAGGCGCAGGGCAGGGCGGCCCAGGCGGGCCAGGCCACCCTCGAGCGCGTCGAGCACTTCAAGGTTGGCGACGAACAGGCGGGTCACCAGCGCCAGGTCGGGGCTGCGCCAATAGCCGTGAATGTAGGCTTCGCCAGCTC  >  NC_002947/3118131‑3118424

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: