| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 3,255,846 | T→G | 11.1% | intergenic (‑109/+27) | PP_2852 ← / ← PP_2853 | sulfatase domain‑containing protein/hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 3,255,846 | 0 | T | G | 11.1% | 152.3 / 11.4 | 54 | intergenic (‑109/+27) | PP_2852/PP_2853 | sulfatase domain‑containing protein/hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base T (25/23); new base G (2/4); total (27/27) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.69e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.87e-01 | |||||||||||
GCAAGCCGGGTGCTTGGGTGGTCGGACAGGTTCTTCACAAAAACTTCCCTTTTGCCATTAAATCGTCATGCATCTGTGCTTGATGATATCAGGCCAGGGCAGGGAAGGCGGCCAGTTACAAGGCTTGTAACCAAAGCCGGGCCCGTT‑CGCACAGGCCCGGCCGATGGCAACTATCAGAAGTAATAAGGGAATTTCAGGCTGAAAGAAAAGTCAGGTGCGTCATCGGTCAGACCAATGGACAGGTTGGGCACGATGGTCAGGTTGTCGGTGGCGGCGAAGGTC > NC_002947/3255700‑3255981 | gCAAGCCGGGTGCTTGGGTGGTCGGACAGGTTCTTCACAAAAACTTCCCTTTTGCCATTAAATCGTCATGCATCTGTGCTTGATGATATCAGGCCAGGGCAGGGAAGGCGGCCAGTTACAAGGCTTGTAACCAAAGCCGGGCCCGTT‑Cg > 1:6226/1‑149 (MQ=255)gCAAGCCGGGTGCTTGGGTGGTCGGACAGGTTCTTCACAAAAACTTCCCTTTTGCCATTAAATCGTCATGCATCTGTGCTTGATGATATCAGGCCAGGGCAGGGAAGGCGGCCAGTTACAAGGCTTGTAACCAAAGCCGGGCCCGTT‑Cg < 4:185537/149‑1 (MQ=255) aaGCCGGGTGCTTGGGTGGTCGGACAGGTTCTTCACAAAAACTTCCCTTTTGCCATTAAATCGTCATGCATCTGTGCTTGATGATATCAGGCCAGGGCAGGGAAGGCGGCCAGTTACAAGGCTTGTAACCAAAGCCGGGCCTGTG‑Cgaa > 3:180451/1‑147 (MQ=255) gCCGGGTGCTTGGGTGGTCGGACAGGTTCTTCACAAAAACTTCCCTTTTGCCATTAAATCGTCATGCATCTGTGCTTGATGATATCAGGCCAGGGCAGGGAAGGCGGCCAGTTACAAGGCTTGTAACCAAAGCCGGGCCCGTT‑CGcaca < 2:6226/149‑1 (MQ=255) ccGGGTGCTTGGGTGGTCGGACAGGTTCTTCACAAAAACTTCCCTTTTGCCATTAAATCGTCATGCATCTGTGCTTGATGATATCAGGCCAGGGCAGGGAAGGCGGCCAGTTACAAGGCTTGTAACCAAAGCCGGGCCCGTT‑CGCACAg > 2:335454/1‑149 (MQ=255) gggTGCTTGGGTGGTCGGACAGGTTCTTCACAAAAACTTCCCTTTTGCCATTAAATCGTCATGCATCTGTGCTTGATGATATCAGGCCAGGGCAGGGAAGGCGGCCAGTTACAAGGCTTGTAACCAAAGCCGGGCCCGTT‑CGCACAGGc < 6:17515/149‑1 (MQ=255) ctTGGGTGGTCGGACAGGTTCTTCACAAAAACTTCCCTTTTGCCATTAAATCGTCATGCATCTGTGCTTGATGATATCAGGCCAGGGCAGGGAAGGCGGCCAGTTACAAGGCTTGTAACCAAAGCCGGGCCTGTG‑CGAACGGGCCCGGc < 4:180451‑M2/147‑1 (MQ=255) ctTGGGTGGTCGGACAGGTTCTTCACAAAAACTTCCCTTTTGCCATTAAATCGTCATGCATCTGTGCTTGATGATATCAGGCCAGGGCAGGGAAGGCGGCCAGTTACAAGGCTTGTAACCAAAGCCGGGCCCGTT‑CGCACAGGCCCGGc < 6:1760‑M2/147‑1 (MQ=255) ctTGGGTGGTCGGACAGGTTCTTCACAAAAACTTCCCTTTTGCCATTAAATCGTCATGCATCTGTGCTTGATGATATCAGGCCAGGGCAGGGAAGGCGGCCAGTTACAAGGCTTGTAACCAAAGCCGGGCCCGTT‑CGCACAGGCCCGGc > 5:1760‑M2/3‑149 (MQ=255) gggTGGTCGGACAGGTTCTTCACAAAAACTTCCCTTTTGCCATTAAATCGTCATGCATCTGTGCTTGATGATATCAGGCCAGGGCAGGGAAGGCGGCCAGTTACAAGGCTTGTAACCAAAGCCGGGCCTGTG‑CGAACGGGCCCGGctt < 3:32588/148‑3 (MQ=255) gggTGGTCGGACAGGTTCTTCACAAAAACTTCCCTTTTGCCATTAAATCGTCATGCATCTGTGCTTGATGATATCAGGCCAGGGCAGGGAAGGCGGCCAGTTACAAGGCTTGTAACCAAAGCCGGGCCTGTG‑CGAACGGGCCCGGct < 3:309981/147‑2 (MQ=255) gggTGGTCGGACAGGTTCTTCACAAAAACTTCCCTTTTGCCATTAAATCGTCATGCATCTGTGCTTGATGATATCAGGCCAGGGCAGGGAAGGCGGCCAGTTACAAGGCTTGTAACCAAAGCCGGGCCCGTT‑CGCACAGGCCCGGcc < 6:116684/147‑1 (MQ=255) gggTGGTCGGACAGGTTCTTCACAAAAACTTCCCTTTTGCCATTAAATCGTCATGCATCTGTGCTTGATGATATCAGGCCAGGGCAGGGAAGGCGGCCAGTTACAAGGCTTGTAACCAAAGCCGGGCCCGTT‑CGCACAGGCCCGGCCGa > 5:232983/1‑149 (MQ=255) ggtCGGACAGGTTCTTCACAAAAACTTCCCTTTTGCCATTAAATCGTCATGCATCTGTGCTTGATGATATCAGGCCAGGGCAGGGAAGGCGGCCAGTTACAAGGCTTGTAACCAAAGCCGGGCCCGTT‑CGCACAGGCCCGGCCGATGGc < 3:37031/149‑1 (MQ=255) gACAGGTTCTTCACAAAAACTTCCCTTTTGCCATTAAATCGTCATGCATCTGTGCTTGATGATATCAGGCCAGGGCAGGGAAGGCGGCCAGTTACAAGGCTTGTAACCAAAGCCGGGCCCGTT‑CGCACAGGCCCGGCCGATGGCAACTa > 2:259154/1‑149 (MQ=255) aCAGGTTCTTCACAAAAACTTCCCTTTTGCCATTAAATCGTCATGCATCTGTGCTTGATGATATCAGGCCAGGGCAGGGAAGGCGGCCAGTTACAAGGCTTGTAACCAAAGCCGGGCCCGTT‑CGCACAGGCCCGGCCGATGGCAACTAt < 6:232983/149‑1 (MQ=255) aGGTTCTTCACAAAAACTTCCCTTTTGCCATTAAATCGTCATGCATCTGTGCTTGATGATATCAGGCCAGGGCAGGGAAGGCGGCCAGTTACAAGGCTTGTAACCAAAGCCGGGCCCGTT‑CGCACAGGCCCGGCCGATGGCAACTATCa < 8:139319/149‑1 (MQ=255) ttcttcACAAAAACTTCCCTTTTGCCATTAAATCGTCATGCATCTGTGCTTGATGATATCAGGCCAGGGCAGGGAAGGCGGCCAGTTACAAGGCTTGTAACCAAAGCCGGGCCCGTT‑CGCACAGGCCCGGCCGATGGCAACTATCAGaa < 7:187427/149‑1 (MQ=255) acaAAAACTTCCCTTTTGCCATTAAATCGTCATGCATCTGTGCTTGATGATATCAGGCCAGGGCAGGGAAGGCGGCCAGTTACAAGGCTTGTAACCAAAGCCGGGCCTGTG‑CGAACGGGCCCgg > 5:132805/1‑124 (MQ=255) acaAAAACTTCCCTTTTGCCATTAAATCGTCATGCATCTGTGCTTGATGATATCAGGCCAGGGCAGGGAAGGCGGCCAGTTACAAGGCTTGTAACCAAAGCCGGGCCTGTG‑CGAACGGGCCCgg < 6:132805/124‑1 (MQ=255) aaaaaCTTCCCTTTTGCCATTAAATCGTCATGCATCTGTGCTTGATGATATCAGGCCAGGGCAGGGAAGGCGGCCAGTTACAAGGCTTGTAACCAAAGCCGGGCCCGTT‑CGCACAGGCCCGGCCGATGGCAACTATCAGaa < 5:107103/141‑1 (MQ=255) aaaaaCTTCCCTTTTGCCATTAAATCGTCATGCATCTGTGCTTGATGATATCAGGCCAGGGCAGGGAAGGCGGCCAGTTACAAGGCTTGTAACCAAAGCCGGGCCCGTT‑CGCACAGGCCCGGCCGATGGCAACTATCAGAAGtaatagg > 3:67248/1‑147 (MQ=255) aaaaaCTTCCCTTTTGCCATTAAATCGTCATGCATCTGTGCTTGATGATATCAGGCCAGGGCAGGGAAGGCGGCCAGTTACAAGGCTTGTAACCAAAGCCGGGCACGTT‑CGCACAGGCCCGGCCGATGGCAACTATCAGaa > 6:107103/1‑141 (MQ=255) aaaaCTTCCCTTTTGCCATTAAATCGTCATGCATCTGTGCTTGATGATATCAGGCCAGGGCAGGGAAGGCGGCCAGTTACAAGGCTTGTAACCAAAGCCGGGCCCGTT‑CGCACAGGCCCGGCCGATGGCAACTATCAGAAGTAATAAgg < 5:207241/149‑1 (MQ=255) tGCCATTAAATCGTCATGCATCTGTGCTTGATGATATCAGGCCAGGGCAGGGAAGGCGGCCAGTTACAAGGCTTGTAACCAAAGCCGGGCCCGTTCCGCACAGGCCCGGCCGATGGCAACTATCAGAAGTAATAAGGGAATTTCAGGc < 1:259154/148‑1 (MQ=255) aTTAAATCGTCATGCATCTGTGCTTGATGATATCAGGCCAGGGCAGGGAAGGCGGCCAGTTACAAGGCTTGTAACCAAAGCCGGGCCCGTT‑CGCACAGGCCCGGCCGATGGCAACTATCAGAAGTAATAAgg > 3:264634/1‑132 (MQ=255) aTTAAATCGTCATGCATCTGTGCTTGATGATATCAGGCCAGGGCAGGGAAGGCGGCCAGTTACAAGGCTTGTAACCAAAGCCGGGCCCGTT‑CGCACAGGCCCGGCCGATGGCAACTATCAGAAGTAATAAgg < 4:264634/132‑1 (MQ=255) aTTAAATCGTCATGCATCTGTGCTTGATGATATCAGGCCAGGGCAGGGAAGGCGGCCAGTTACAAGGCTTGTAACCAAAGCCGGGCCCGTT‑CGCACAGGCCCGGCCGATGGCAACTATCAGAAGTAATAAGGGAATTTCAGGCTga > 7:254827/1‑146 (MQ=255) ttAAATCGTCATGCATCTGTGCTTGATGATATCAGGCCAGGGCAGGGAAGGCGGCCAGTTACAAGGCTTGTAACCAAAGCCGGGCCCGTT‑CGCACAGGCCCGGCCGATGGCAACTATCAGAAGTAATAAGGGAATTTCAGGCTgaaag > 4:161230/1‑148 (MQ=255) aaTCGTCATGCATCTGTGCTTGATGATATCAGGCCAGGGCAGGGAAGGCGGCCAGTTACAAGGCTTGTAACCAAAGCCGGGCCCGTT‑CGCACAGGCCCGGCCGATGGCAACTATCAGAAGtaa < 6:262514/123‑1 (MQ=255) aaTCGTCATGCATCTGTGCTTGATGATATCAGGCCAGGGCAGGGAAGGCGGCCAGTTACAAGGCTTGTAACCAAAGCCGGGCCCGTT‑CGCACAGGCCCGGCCGATGGCAACTATCAGAAGtaa > 5:262514/1‑123 (MQ=255) gTCATGCATCTGTGCTTGATGATATCAGGCCAGGGCAGGGAAGGCGGCCAGTTACAAGGCTTGTAACCAAAGCCGGGCCCGTT‑CGCACAGGCCCGGCCGATGGCAACTATCAGAAGTAATAAGGGAATTTCAGGCTGAAAGAAAAGt > 7:138984/1‑147 (MQ=255) gCATCTGTGCTTGATGATATCAGGACAGGGCAGGGAAGGCGGCCAGTTACAAGGCTTGTAACCAAAGCCGGGCCAGTT‑CGCACAGGCACGGCCGATGGCAACTATCAGAATTAATAAGGGAATTTCAGGCTGAAAGAAAAGTCAGCTGc > 3:311572/1‑149 (MQ=255) gtgCTTGATGATATCAGGCCAGGGCAGGGAAGGCGGCCAGTTACAAGGCTTGTAACCAAAGCCGGGCCCGTT‑CGCACAGGCCCGGCCGATGGCAACTATCAGAAGTAATAAGGGAATTTCAGGCTGAAAGAAAAGTCAGGTGCGTCATc > 8:24216/1‑149 (MQ=255) gatgatATCAGGCCAGGGCAGGGAAGGCGGCCAGTTACAAGGCTTGTAACCAAAGCCGGGCCCGTT‑CGCACAGGCCCGGCCGATGGCAACTATCAGAAGTAATAAGGGAATTTCAGGCTGAAAGAAAAGTCAGGTGCGTCATCGGt > 5:110061/1‑146 (MQ=255) tgatATCAGGCCAGGGCAGGGAAGGCGGCCAGTTACAAGGCTTGTAACCAAAGCCGGGCCCGTT‑CGCACAGGCCCGGCCGATGGCAACTATCAGAAGTAATAAGGGAATTTCAGGCTGAAAGAAAAGTCAGGTGCGTCATCGGTCAGAc < 4:113152/149‑1 (MQ=255) tatCAGGCCAGGGCAGGGAAGGCGGCCAGTTACAAGGCTTGTAACCAAAGCCGGGCCCGTT‑CGCACAGGCCCGGCCGATGGCAACTATCAGAAGTAATAAGGGAATTTCAGGCTGAAAGAAAAGTCAGGTGCGTCATCGGTCAGACCaa < 7:24216/149‑1 (MQ=255) atCAGGCCAGGGCAGGGAAGGCGGCCAGTTACAAGGCTTGTAACCAAAGCCGGGCCCGTT‑CGCACAGGCCCGGCCGATGGCAACTATCAGAAGTAATAAGGGAATTTCAGGCTGAAAGAAAAGTCAGGTGCGTCATCGGTCAGACCAAt > 6:237767/1‑149 (MQ=255) tCAGGCCAGGGCAGGGAAGGCGGCCAGTTACAAGGCTTGTAACCAAAGCCGGGCCCGTT‑CGCACAGGCCCGGCCGATGGCAACTATCAGAAGTAATAAGGGAATTTCAGGCTGAAAGAAAAGTCAGGTGCGTCATCGGTCAGACCAAt < 1:335454/148‑1 (MQ=255) tCAGGCCAGGGCAGGGAAGGCGGCCAGTTACAAGGCTTGTAACCAAAGCCGGGCCCGTT‑CGCACAGGCCCGGCCGATGGCAACTATCAGAAGTAATAAGGGAATTTCAGGCTGAAAGAAAAGTCAGGTGCGTCATCGGTCAGACCAATg < 8:254827/149‑1 (MQ=255) ggCCAGGGCAGGGAAGGCGGCCAGTTACAAGGCTTGTAACCAAAGCCGGGCCCGTT‑CGCACAGGCCCGGCCGATGGCAACTATCAGAAGTAATAAGGGAATTTCAGGCTGAAAGAAAAGTCAGGTGCGTCATCGGTCAGACCAATGGa > 2:31171/1‑148 (MQ=255) agggcagggAAGGCGGCCAGTTACAAGGCTTGTAACCAAAGCCGGGCCCGTT‑CGCACAGGCCCGGCCGATGGCAACTATCAGAAGTAATAAGGGAATTTAAGGCTGAAAGAAAAGTCAGGTGCGTCATCGGTCAGACCAATGGACAGGt > 3:270169/1‑149 (MQ=255) ggcCAGTTACAAGGCTTGTAACCAAAGCCGGGCCCGTT‑CGCACAGGCCCGGCCGATGGCAACTATCAGAAGTAATAAGGGAATTTCAGGCTGAAAGAAAAGTCAGGTGCGTCATCGGTCAGACCAATGGACAGGTTGGGCACGATGGt > 7:305262/1‑148 (MQ=255) ggcCAGTTACAAGGCTTGTAACCAAAGCCGGGCCCGTT‑CGCACAGGCCCGGCCGATGGCAACTATCAGAAGTAATAAGGGAATTTCAGGCTGAAAGAAAAGTCAGGTGCGTCATCGGTCAGACCAATGGACAGGTTGGGCACGATGGt > 1:265359/1‑148 (MQ=255) aaGGCTTGTAACCAAAGCCGGGCCCGTT‑CGCACAGGCCCGGCCGATGGCAACTATCAGAAGTAATAAGGGAATTTCAGGCTGAAAGAAAAGTCAGGTGCGTCATCGGTCAGACCAATGGACAGGTTGGGCACg > 7:259090/1‑133 (MQ=255) aaGGCTTGTAACCAAAGCCGGGCCCGTT‑CGCACAGGCCCGGCCGATGGCAACTATCAGAAGTAATAAGGGAATTTCAGGCTGAAAGAAAAGTCAGGTGCGTCATCGGTCAGACCAATGGACAGGTTGGGCACg < 8:259090/133‑1 (MQ=255) aaGGCTTGTAACCAAAGCCGGGCCCGTT‑CGCACAGGCCCGGCCGATGGCAACTATCAGAAGTAATAAGGGAATTTCAGGCTGAAAGAAAAGTCAGGTGCGTCATCGGTCAGACCAATGGACAGGTTGGGCACGATGGTCAGGtt > 7:275890/1‑144 (MQ=255) aaGGCTTGTAACCAAAGCCGGGCCCGTT‑CGCACAGGCCCGGCCGATGGCAACTATCAGAAGTAATAAGGGAATTTCAGGCTGAAAGAAAAGTCAGGTGCGTCATCGGTCAGACCAATGGACAGGTTGGGCACGATGGTCAGGtt < 8:275890/144‑1 (MQ=255) gTAACCAAAGCCGGGCCCGTT‑CGCACAGGCCCGGCCGATGGCAACTATCAGAAGTAATAGGGGAATTTCAGGCTGAAAGAAAAGTCAGGTGCGTCATCGGTCAGACCAATGGACAGGTTGGGCACGATGGTCAGGTTGTCGGTggcgg < 4:67248/148‑1 (MQ=255) tAACCAAAGACGGGCAATTT‑CGCAAAGGCAAGGACTATTGAAACTATAAGAAGTAATAAGGTAATTTCAGGCTGAAAGAAAAGTAAGGTGAGTCATAGGTCATCCCATTTGACAGGTTGTGCACTATGGTCAGGTTGTCGGTggcgtc > 3:150793/1‑146 (MQ=255) aCCAAAGCCGGGCCCGTT‑CGCACAGGCCCGGCCGATGGCAACTATCAGAAGTAATAAGGGAATTTCAGGCTGAAAGAAAAGTTAGGTGCGTCATCGGTCAGACCAATGGACAGGTTGGGCACGATGGTCAGGTTGTCGGTGgcggcg > 3:202852/1‑147 (MQ=255) ccAAAGCCGGGCCCGTT‑CGCACAGGCCCGGCCGATGGCAACTATCAGAAGTAATAAGGGAATTTCAGGCTGAAAGAAAAGTCAGGTGCGTCATCGGTCAGACCAATGGACAGGTTGGGCACGATGGTCAGGTTGTCGGTGGCGGCGAAg < 5:237767/149‑1 (MQ=255) cAAAGCCGGGCCCGTT‑CGCACAGGCCCGGCCGATGGCAACTATCAGAAGTAATAAGGGAATTTCAGGCTGAAAGAAAAGTCAGGTGCGTCATCGGTCAGACCAATGGACAGGTTGGGCACGATGGTCAGGTTGTCGGTGGCGGCGAAgg > 3:160739/1‑149 (MQ=255) aaGCCGGGCCCGTT‑CGCACAGGCCCGGCCGATGGCAACTATCAGAAGTAATAAGGGAATTTCAGGCTGAAAGAAAAGTCAGGTGCGTCATCGGTCAGACCAATGGACAGGTTGGGCACGATGGTCAGGTTGTCGGTGGCGGCGAAGGTc < 1:31171/149‑1 (MQ=255) | GCAAGCCGGGTGCTTGGGTGGTCGGACAGGTTCTTCACAAAAACTTCCCTTTTGCCATTAAATCGTCATGCATCTGTGCTTGATGATATCAGGCCAGGGCAGGGAAGGCGGCCAGTTACAAGGCTTGTAACCAAAGCCGGGCCCGTT‑CGCACAGGCCCGGCCGATGGCAACTATCAGAAGTAATAAGGGAATTTCAGGCTGAAAGAAAAGTCAGGTGCGTCATCGGTCAGACCAATGGACAGGTTGGGCACGATGGTCAGGTTGTCGGTGGCGGCGAAGGTC > NC_002947/3255700‑3255981 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |