Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 3,422,207 | A→G | 7.2% | K122R (AAG→AGG) | PP_3038 → | TraC domain‑containing protein |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 3,422,207 | 0 | A | G | 7.2% | 158.2 / 2.4 | 55 | K122R (AAG→AGG) | PP_3038 | TraC domain‑containing protein |
Reads supporting (aligned to +/- strand): ref base A (29/22); new base G (2/2); total (31/24) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.02e-01 |
CCGACGAGCGTGAAGTGATGCGCGCCCGGCAGGCTGACGCCAAACGGCGTGCTGCAGAGATCGCCGCGAACGCTGCACGCCGTGCGGCCAAGCGTGCGGAAGCGCTGTTCAAGCGTATGCCCGAAAAGGGGCG‑TAGCGCCTACCTGGATCGAAAGCAGGTTGTCGGTTTCGGCGTCCGCTATGCGCCGAAGTCGGGCGCGGTGCTGGTTCCGATGCAGAATGCTCAGGACGCCATTGTCGGCCTGCAGGTAATTTTCCCGGCTGTCCAAGAGG > NC_002947/3422081‑3422353 | ccGACGAGCGTGAAGTGATGCGCGCCCGGCAGGCTGACGCCAAACGGCGTGCTGCAGAGATCGCCGCGAACGCTGCACGCCGTGCGGCCAAGCGTGCGGAAGCGCTGTTCAAGCGTATGCCCGAAAAGGGGCG‑TAGCGCCTTCCTGGAt < 4:303503/149‑1 (MQ=255) ccGACGAGCGTGAAGTGATGCGCGCCCGGCAGGCTGACGCCAAACGGCGTGCTGCAGAGATCGCCGCGAACGCTGCACGCCGTGCGGCCAAGCGTGCGGAAGCGCTGTTCAAGCGTATGCCCGAAAAGGGGCA‑TAGCGCCTACCTGGAt > 1:118327/1‑149 (MQ=255) gaGCGTGAAGTGATGCGCGCCCGGCAGGCTGACGCCAAACGGCGTGCTGCAGAGATCGCCGCGAACGCTGCACGCCGTGCGGCCAAGCGTGCGGAAGCGCTGTTCAAGCGTATGCCCGAAAAGGGGCG‑TAGCGCCTACCTGGATCGa > 5:27350/1‑147 (MQ=255) cGTGAAGTGATGCGCGCCCGGCAGGCTGACGCCAAACGGCGTGCTGCAGAGATCGCCGCGAACGCTGCACGCCGTGCGGCCAAGCGTGCGGAAGCGCTGTTCAAGCGTATGCCCGAAAAGGGGCG‑TAGCGCCTACCTGGATCGAAAGCa < 7:101368/149‑1 (MQ=255) tGAAGTGATGCGCGCCCGGCAGGCTGACGCCAAACGGCGTGCTGCAGAGATCGCCGCGAACGCTGCACGCCGTGCGGCCAAGCGTGCGGAAGCGCTGTTCAAGCGTATGCCCGAAAAGGGGCG‑TAGCGCCTACCTGGATCGAAAGCAgg > 8:44524/1‑149 (MQ=255) aaGTGATGCGCGCCCGGCAGGCTGACGCCAAACGGCGTGCTGCAGAGATCGCCGCGAACGCTGCACGCCGTGCGGCCAAGCGTGCGGAAGCGCTGTTCAAGCGTATGCCCGAAAAGGGGCG‑TAGCGCCTACCTGGATCGAAAGCAGGtt > 2:66716/1‑149 (MQ=255) aTGCGCGCCCGGCAGGCTGACGCCAAACGGCGTGCTGCAGAGATCGCCGCGAACGCTGCACGCCGTGCGGCCAAGCGTGCGGAAGCGCTGTTCAAGCGTATGCCCGAAAAGGGGCG‑TAGCGCCTACCTGGATCGAAAGCAGGTTGTCg < 4:319268/148‑1 (MQ=255) aTGCGCGCCCGGCAGGCTGACGCCAAACGGCGTGCTGCAGAGATCGCCGCGAACGCTGCACGCCGTGCGGCCAAGCGTGCGGAAGCGCTGTTCAAGCGTATGCCCGAAAAGGGGCG‑TAGCGCCTACCTGGATCGAAAGCAGGTTGTCg > 3:319268/1‑148 (MQ=255) tGCGCGCCCGGCAGGCTGACGCCAAACGGCGTGCTGCAGAGATCGCCACGAACGCTGCACGCCGTGCGGCCAAGCGTGCGGAAGCGCTGTTCAAGCGTATGCCCGAAAAGGGGCG‑TAGCGCCTACCTGGATCGAAAGCAGGTTGTCGGt > 1:77578/1‑149 (MQ=255) gcgcCCGGCAGGCTGACGCCAAACGGCGTGCTGCAGAGATCGCCGCGAACGCTGCACGCCGTGCGGCCAAGCGTGCGGAAGCGCTGTTCAAGCGTATGCCCGAAAAGGGGCG‑TAGCGCCTACCTGGATCGAAAGCAGGTTGTCGGTTTc > 6:123310/1‑149 (MQ=255) cgcCCGGCAGGCTGACGCCAAACGGCGTGCTGCAGAGATCGCCGCGAACGCTGCACGCCGTGCGGCCAAGCGTGCGGAAGCGCTGTTCAAGCGTATGCCCGAAAAGGGGCG‑TAGCGCCTACCTGGATCGAAAGCAGGTTGTCGGTTTCg > 3:30545/1‑149 (MQ=255) gCAGGCTGACGCCAAACGGCGTGCTGCAGAGATCGCCGCGAACGCTGCACGCCGTGCGGCCAAGCGTGCGGAAGCGCTGTTCAAGCGTATGGCCGAAAAGGGGCGCTAGCGCCTACCTGGATCGAAAGCAGGTTGTCGGTTTCGGCGTc < 1:66716/149‑1 (MQ=255) gCTGACGCCAAACGGCGTGCTGCAGAGATCGCCGCGAACGCTGCACGCCGTGCGGCCAAGCGTGCGGAAGCGCTGTTCAAGCGTATGCCCGAAAAGGGGCG‑TAGCGCCTACCTGGATCGAAAGCAGGTTGTCGGTTTCGGCGTCCGCTa > 3:49258/1‑149 (MQ=255) aCGCCAAACGGCGTGCTGCAGAGATCGCCGCGAACGCTGCACGCCGTGCGGCCAAGCGTGCGGAAGCGCTGTTCAAGCGTATGCCCGAAAAGGGGCG‑TAGCGCCTACCTGGATCGAAAGCAGGTTGTCGGTTTCGGCGTCCGCTATgc < 8:315928/148‑1 (MQ=255) gCCAAACGGCGTGCTGCAGGGATCGCCGCGAACGCTGCACGCCGTGCGGCCAAGCGTGCGGAAGCGCTGTTCAAGCGTATGCCCGAAAAGGGGCG‑TAGCGCCTACCTGGATCGAAAGCAGGTTGTCGGTTTCGGCGTCCGCTATGCGcc > 1:117575/1‑149 (MQ=255) gCCAAACGGCGTGCTGCAGAGATCGCCGCGAACGCTGCACGCCGTGCGGCCAAGCGTGCGGAAGCGCTGTTCAAGCGTATGCCCGAAAAGGGGCG‑TAGCGCCTACCTGGATCGAAAGCAGGTTGTCGGTTTCGGCGTCCGCTATGCGcc > 2:32286/1‑149 (MQ=255) cAAACGGCGGGCTGCAGAGATCGCCGCGAACGCTGCACGCCGTGCGGCCAAGCGTGCGGCAGCGCTGTTCAAGCGTATGCCCGAAAAGGGGCG‑TAGCGCCTCCCTGGATCGAAAGCAGGTTGGCGGTTTCGGCGTCCGCTATGCGCCg > 4:220360/1‑148 (MQ=255) tgcAGAGATCGCCGCGAACGCTGCACGCCGTGCGGCCAAGCGTGCGGAAGCGCTGTTCAAGCGTATGCCCGAAAAGGGGCG‑TAGCGCCTACCTGGATCGAAAGCAGGTTGTCGGTTTCGGCGTCCGCTATGCGCCGAAGTCGGGCGCgg > 2:278933/1‑149 (MQ=255) gggaTCGCCGCGAACGCTGCACGCCGTGCGGCCAAGCGTGCGGAAGCGCTGTTCAAGCGTATGCCCGAAAAGGGGCG‑TAGCGCCTACCTGGATCGAAAGCAGGTTGTCGGTTTCGGCGTCCGCTATGCGCCGAAGTCGGGCGCGGTGCt < 2:117575/147‑1 (MQ=255) aTCGCCGCGAACGCTGCACGCCGTGCGGCCAAGCGTGCGGAAGCGCTGTTCAAGCGTATGCCCGAAAGGGGGCG‑TAGCGCCTACCTGGATCGAAAGCAGGTTGTCGGTTTCGGCGTCCGCTATGCGCCGAAGTCGGGCGCGGTGCTGGt > 6:54417/1‑149 (MQ=255) aTCGCCGCGAACGCTGCACGCCGTGCGGCCAAGCGTGCGGAAGCGCTGTTCAAGCGTATGCCCGAAAGGGGGCG‑TAGCGCCTACCTGGATCGAAAGCAGGTTGTCGGTTTCGGCGTCCGCTATGCGCCGAAGTCGGGCGCGGTGCTGGt > 6:49352/1‑149 (MQ=255) cgccgcGAACGCTGCACGCCGTGCGGCCAAGCGTGCGGAAGCGCTGTTCAAGCGTATGCCCGAAAAGGGGCG‑TAGCGCCTACCTGGATCGAAAGCAGGTTGTCGGTTTCGGCGTCCGCTATGCGCCGAAGTCgg < 5:53261/134‑1 (MQ=255) cgccgcGAACGCTGCACGCCGTGCGGCCAAGCGTGCGGAAGCGCTGTTCAAGCGTATGCCCGAAAAGGGGCG‑TAGCGCCTACCTGGATCGAAAGCAGGTTGTCGGTTTCGGCGTCCGCTATGCGCCGAAGTCgg > 6:53261/1‑134 (MQ=255) cgccgcGAACGCTGCACGCCGTGCGGCCAAGCGTGCGGAAGCGCTGTTCAAGCGTATGCCCGAAAAGGGGCG‑TAGCGCCTACCTGGATCGAAAGCAGGTTGTCGGTTTCGGCGTCCGCTATGCGCCGAAGTCGGGCGCGGTGCTGGTTc > 6:234470/1‑149 (MQ=255) gccgcGAACGCTGCACGCCGTGCGGCCAAGCGTGCGGAAGCGCTGTTCAAGCGTATGCCCGAAAAGGGGCG‑TAGCGCCTACCTGGATCGAAAGCAGGTTGTCGGTTTCGGCGTCCGCTATGCGCCGAAGTCGGGCGCGGTGCTGGTTc < 4:30545/148‑1 (MQ=255) ccgcGAACGCTGCACGCCGTGCGGCCAAGCGTGCGGAAGCGCTGTTCAAGCGTATGCCCGAAAAGGGGCG‑TAGCGCCTACCTGGATCGAAAGCAGGTTGTCGGTTTCGGCGTCCGCTATGCGCCGAAGTCGGGcgcg > 7:271737/1‑137 (MQ=255) ccgcGAACGCTGCACGCCGTGCGGCCAAGCGTGCGGAAGCGCTGTTCAAGCGTATGCCCGAAAAGGGGCG‑TAGCGCCTACCTGGATCGAAAGCAGGTTGTCGGTTTCGGCGTCCGCTATGCGCCGAAGTCGGGcgcg < 8:271737/137‑1 (MQ=255) ccgcGAACGCTGCACGCCGTGCGGCCAAGCGTGCGGAAGCGCTGTTCAAGCGTATGCCCGAAAAGGGGCG‑TAGCGCCTACCTGGATCGAAAGCAGGTTGTCGGTTTCGGCGTCCGCTATGCGCCGAAGTCGGGCGCGGTGCTGGTTCCg < 1:278933/149‑1 (MQ=255) cgcgAACGCTGCACGCCGTGCGGCCAAGCGTGCGGAAGCGCTGTTCAAGCGTATGCCCGAAAAGGGGCG‑TAGCGCCTACCTGGATCGAAAGCAGGTTGTCGGTTTCGGCGTCCGCTAAGCGCCCAAGTAGGGCGCGGTGCTGGTTCCGa > 8:279714/1‑149 (MQ=255) gcgAACGCTGCACGCCGTGCGGCCAAGCGTGCGGAAGCGCTGTTCAAGCGTATGCCCGAAAAGGGGCG‑TAGCGCCTACCTGGATCGAAAGCAGGTTGTCGGTTTCGGCGTCCGCTATGGGCCGAAGTCGGGCGCGGTGCTGGTTCCGAt < 1:32286/149‑1 (MQ=255) aaCGCTGCACGCCGTGCGGCCAAGCGTGCGGAAGCGCTGTTCAAGCGTATGCCCGAAAAGGGGCG‑TAGCGCCTACCTGGATCGAAAGCAGGTTGTCGGTTTCGGCGTCCGCTATGCGCCGaa < 4:135580/122‑1 (MQ=255) aaCGCTGCACGCCGTGCGGCCAAGCGTGCGGAAGCGCTGTTCAAGCGTATGCCCGAAAAGGGGCG‑TAGCGCCTACCTGGATCGAAAGCAGGTTGTCGGTTTCGGCGTCCGCTATGCGCCGaa > 3:135580/1‑122 (MQ=255) aaCGCTGCACGCCGTGCGGCCAAGCGTGCGGAAGCGCTGTTCAAGCGTATGCCCGAAAAGGGGCG‑TAGCGCCTACCTGGATCGAAAGCAGGTTGTCGGTTTCGGCGTCCGCTATGCGCCGAAGTCGGGCGCGGTGCTGGTTCCGATGCa < 2:77578/149‑1 (MQ=255) tGCACGCCGTGCGGCCAAGCGTGCGGAAGCGCTGTTCAAGCGTATGCCCGAAAAGGGGCG‑TAGCGCCTACCTGGATCGAAAGCAGGTTGTCGGTTTCGGCGTCCGCTATGCGCCGAAGTCGGGCGCGGTGCTGGtt < 6:335500/136‑1 (MQ=255) tGCACGCCGTGCGGCCAAGCGTGCGGAAGCGCTGTTCAAGCGTATGCCCGAAAAGGGGCG‑TAGCGCCTACCTGGATCGAAAGCAGGTTGTCGGTTTCGGCGTCCGCTATGCGCCCAAGACGGGCGCGGTGCTGGtt > 5:335500/1‑136 (MQ=255) gCACGCCGTGCGGCCAAGCGTGCGGAAGCGCTGTTCAAGCGTATGCCCGAAAAGGGGCG‑TAGCGCCTACCTGGATCGAAAGCAGGTTGTCGGTTTCGGCGTCCGCTATGCGCCGAAGTCGGGCGCGGTGCTGGTTCCGATGCAg < 8:158063/144‑1 (MQ=255) gCACGCCGTGCGGCCAAGCGTGCGGAAGCGCTGTTCAAGCGTATGCCCGAAAAGGGGCG‑TAGCGCCTACCTGGATCGAAAGCAGGTTGTCGGTTTCGGCGTCCGCTATGCGCCGAAGTCGGGCGCGGTGCTGGTTCCGATGCAg > 7:158063/1‑144 (MQ=255) gCCGTGCGGCCAAGCGTGCGGAAGCGCTGTTCAAGCGTATGCCCGAAAAGGGGCG‑TAGCGCCTACCTGGATCGAAAGCAGGTTGTCGGTTTCGGCGTCCGCTATGCGCCGAAGTCGGGCGCGGTGCTGGTTCCGATGCAGAATGCTCAg < 7:44524/149‑1 (MQ=255) gCCAAACGTGCGGAAGCGCTGTTCAAGCGTATGCCCGAAAAGGGGCG‑TAGCGCCTACCTGGATCGAAAGCAGGTTCGCGCATTCGGCGTCCGCTATGCGCCGAAGACGGGCGCGGTGCAGGTACCGATGCAGAATGCTCAGGCCGca > 2:178638/1‑146 (MQ=255) gCGTGCGGAAGCGCTGTTCAAGCGTATGCCCGAAAAGGGGCG‑TAGCGCCTACCTGGATCGAAAGCAGGTTGTCGGTTTCGGCGTCCGCTATGCGCCGAAGTCGGGCGCGGTGCTGGTTCCGATGCAGAATGCTCAGGACGCCATTGTCg < 4:49258/149‑1 (MQ=255) gTGCGGAAGCGCTGTTCAAGCGTATGCCCGAAAAGGGGCG‑TAGCGCCTACCTGGATCGAAAGCAGGTTGTCGGTTTCGGCGTCCGCTATGCGCCGAAGTCGGGCGCGGTGCTGGTTCCGATGCAGAATGCTCAGGACGCCATTGTc < 5:9602/146‑1 (MQ=255) gTGCGGAAGCGCTGTTCAAGCGTATGCCCGAAAAGGGGCG‑TAGCGCCTACCTGGATCGAAAGCAGGTTGTCGGTTTCGGCGTCCGCTATGCGCCGAAGTCGGGCGCGGTGCTGGTTCCGATGCAGAATGCTCAGGACGCCATTGTc > 6:9602/1‑146 (MQ=255) gTGCGGAAGCGCTGTTCAAGCGTATGCCCGAAAAGGGGCG‑TAGCGCCTACCTGGATCGAAAGCAGGTTGTCGGTTTCGGCGTCCGCTATGCGCCGAAGTCGGGCGCGGTGCTGGTTCCGATGCAGAATGCTCAGGACGCCATTGTCGGc < 5:234470/149‑1 (MQ=255) ggAAGCGCTGTTCAAGCGTATGCCCGAAAAGGGGCG‑TAGCGCCTACCTGGATCGAAAGCAGGTTGTCGGTTTCGGCGTCCGCTATGCGCCGAAGTCGGGCGCGGTGCTGGTTCCGATGCAGAATGCTCAGGCCGACAATGGCGTCCTga < 1:178638/149‑2 (MQ=255) ggAAGCGCTGTTCAAGCGTATGCCCGAAAAGGGGCG‑TAGCGCCTACCTGGATCGAAAGCAGGTTGTCGGTTTCGGCGTCCGCTATGCGCCGAAGTCGGGCGCGGTGCTGGTTCCGATGCAGAATGCTCAGGACGCCATTGTCGGCCTg > 7:322403/1‑148 (MQ=255) ggAAGCGCTGTTCAAGCGTATGCCCGAAAAGGGGCG‑TAGCGCCTACCTGGATCGAAAGCAGGTTGTCGGTTTCGGCGTCCGCTATGCGCCGAAGTCGGGCGCGGTGCTGGTTCCGATGCAGAATGCTCAGGACGCCATTGTCGGCCTg > 2:183345/1‑148 (MQ=255) gAAGCGCTGTTCAAGCGTATGCCCGAAAAGGGGCG‑TAGCGCCTACCTGGATCGAAAGCAGGTTGTCGGTTTCGGCGTCCGCTATGCGCCGAAGTCGGGCGCGGTGCTGGTTCCGATGCAGAATGCTCAGGACGCCATTGTCGGCCTg > 1:117553/1‑147 (MQ=255) ttCAAGCGTATGCCCGAAAAGGGGCG‑TAGCGCCTACCTGGATCGAAAGCAGGTTGTCGGTTTCGGCGTCCGCTATGCGCCGAAGTCGGGCGCGGTGCTGGTTCCGATGCAGAATGCTCAGGCCGACAATGGCGTCCTga < 6:104033/139‑2 (MQ=255) ttCAAGCGTATGCCCGAAAAGGGGCG‑TAGCGCCTACCTGGATCGAAAGCAGGTTGTCGGTTTCGGCGTCCGCTATGCGCCGAAGTCGGGCGCGGTGCTGGTTCCGATGCAGAATGCTCAGGCCGACAATGGCGTCCTga > 5:104033/1‑138 (MQ=255) aaGCGTATGCCCGAAAAGGGGCG‑TAGCGCCTACCTGGATCGAAAGCAGGTTGTCGGTTTCGGCGTCCGCTATGCGCCGAAGTCGGGCGCGGTGCTGGTTCCGATGCAGCATGCTCAGGACGCCATTCTCGTCCGGCAGGTAATTTAccc > 3:190277/1‑149 (MQ=255) aaGCGTATGCCCGAAAAGGGGCG‑TAGCGCCTACCTGGATCGAAAGCAGGTTGTCGGTTTCGGCGTCCGCTATGCGCCGAAGTCGGGCGCGGTGCTGGTTCCGATGCAGAATGCTCAGGACGCCATTGTCGGCCTGCAGGTAATTTTcc < 2:142725/148‑1 (MQ=255) aaGCGTATGCCCGAAAAGGGGCG‑TAGCGCCTACCTGGATCGAAAGCAGGTTGTCGGTTTCGGCGTCCGCTATGCGCCGAAGTCGGGCGCGGTGCTGGTTCCGATGCAGAATGCTCAGGACGCCATTGTCGGCCTGCAGGTAATTTTcc > 1:142725/1‑148 (MQ=255) gTATGCCCGAAAGGGGGCG‑TAGCGCCTACCTGGATCGAAAGCAGGTTGTCGGTTTCGGCGTCCGCTATGCGCCGAAGTCGGGCGCGGTGCTGGTTCCGATGCAGAATGCTCAGGACGCCATTGTCGGCCTGCAGGTAATTTTCCCGGCt < 5:54417/149‑1 (MQ=255) gTATGCCCGAAAGGGGGCG‑TAGCGCCTACCTGGATCGAAAGCAGGTTGTCGGTTTCGGCGTCCGCTATGCGCCGAAGTCGGGCGCGGTGCTGGTTCCGATGCAGAATGCTCAGGACGCCATTGTCGGCCTGCAGGTAATTTTCCCGGCt < 5:49352/149‑1 (MQ=255) tATGCCCGAAAAGGGGCG‑TAGCGCCTACCTGGATCGAAAGCAGGTTGTCGGTTTCGGCGTCCGCTATGCGCCGAAGTCGGGCGCGGTGCTGGTTCCGATGCAGAATGCTCAGGACGCCATTGTCGGCCTGCAGGTAATTTTCCCGGCTg > 7:59898/1‑149 (MQ=255) aaaGGGGCG‑TAGCGCCTACCTGGATCGAAAGCAGGTTGTCGGTTTCGGCGTCCGCTATGCGCCGATGTCGGGCGCGGTGCTGGTTCCGTTGCAGAATGCTCAGGACGCCATTGTCGGCCTGCAGGTAATTTTCCCGGCTGTCCAAGAgg < 5:79291/149‑1 (MQ=255) | CCGACGAGCGTGAAGTGATGCGCGCCCGGCAGGCTGACGCCAAACGGCGTGCTGCAGAGATCGCCGCGAACGCTGCACGCCGTGCGGCCAAGCGTGCGGAAGCGCTGTTCAAGCGTATGCCCGAAAAGGGGCG‑TAGCGCCTACCTGGATCGAAAGCAGGTTGTCGGTTTCGGCGTCCGCTATGCGCCGAAGTCGGGCGCGGTGCTGGTTCCGATGCAGAATGCTCAGGACGCCATTGTCGGCCTGCAGGTAATTTTCCCGGCTGTCCAAGAGG > NC_002947/3422081‑3422353 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |