| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_002947 | 3,845,705 | +G | intergenic (‑72/+26) | PP_3394 ← / ← PP_3395 | 3‑hydroxy‑3‑methylglutaryl‑CoA lyase/LysR family transcriptional regulator |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 3,845,703 | 1 | . | G | 98.2% | 183.1 / ‑3.1 | 54 | intergenic (‑70/+28) | PP_3394/PP_3395 | 3‑hydroxy‑3‑methylglutaryl‑CoA lyase/LysR family transcriptional regulator |
| Reads supporting (aligned to +/- strand): ref base . (0/1); new base G (27/26); total (27/27) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.04e-01 | |||||||||||
GCTGCTGTCGGCATGATCACTTGCAGGCTCTGCAAGCCATCGCGCAGGCCGACTTCATTGATTGT‑TATTGTTGTCATCGCGGTCTCTCTGTCTGAAGCGTTGCGCCAGACTAAGAGCTGGATGACGGGCAGAAAAGACGTGTTTC‑GC‑GGCTGATCCATCGTCAGCCACGATGGATCAGCCCGCGCCCTGCCAGGCCGGTGCACGCAGCAACAGGTGGTCAAGCAGGCGCCGAGCCGACAG‑CGAGAGCGTGTGCCGGTCGCGCATGCAGATGACGAATTCACCAAGC > NC_002947/3845557‑3845842 | gctgctGTCGGCATGATCACTTGCAGGCTCTGCAAGCCATCGCGCAGGCCGACTTCATTGATTGT‑TATTGTTGTCATCGCGGTCTCTCTGTCTGAAGCGTTGCGCCAGACTAAGAGCTGGATGACGGGCAGAAAAGACGTGTTTC‑GC‑gg < 7:151413/149‑1 (MQ=255) tCGGCATGATCACTTGCAGGCTCTGCAAGCCATCGCGCAGGCCGACTTCATTGATTGT‑TATTGTTGTCATCGCGGTCTCTCTGTCTGAAGCGTTGCGCCAGACTAAGAGCTGGATGACGGGCAGAAAAGACGTGTTTC‑GC‑gggctga < 1:138427/147‑6 (MQ=255) ggCATGATCACTTGCAGGCTCTGCAAGCCATCGCGCAGGCCGACTTCATTGATTGT‑TATTGTTGTCATCGCGGTCTCTCTGTCTGAAGCGTTGCGCCAGACTAAGAGCTGGATGACGGGCAGAAAAGACGTGTTTC‑GCGGGCTGAtac > 6:376858/1‑146 (MQ=255) gCATGATCACTTGCAGGCTCTGCAAGCCATCGCGCAGGCCGACTTCATTGATTGTGTATTGTTGTCATCGCGGTCTCTCTGTCTGAAGCGTTGCGCCAGACTAAGAGCTGGATGACGGGCAGAAAAGACGTGTTTC‑GCGGGCTGATCCa > 1:112511/1‑149 (MQ=255) cATGATCACTTGCAGGCTCTGCAAGCCATCGCGCAGGCCGACTTCATTGATTGT‑TATTGTTGTCATCGCGGTCTCTCTGTCTGAAGCGTTGCGCCAGACTAAGAGCTGGATGACGGGCAGAAAAGACGTGTTTC‑GCGGGCTGATCCATc < 1:190868/149‑1 (MQ=255) aTCACTTGCAGGCTCTGCAAGCCATCGCGCAGGCCGACTTCATTGATTGT‑TATTGTTGTCATCGCGGTCTCTCTGTCTGAAGCGTTGCGCCAGACTAAGAGCTGGATGACGGGCAGAAAAGACGTGTTTC‑GCGGGCTGATCCATc > 4:247876/1‑145 (MQ=255) aTCACTTGCAGGCTCTGCAAGCCATCGCGCAGGCCGACTTCATTGATTGT‑TATTGTTGTCATCGCGGTCTCTCTGTCTGAAGCGTTGCGCCAGACTAAGAGCTGGATGACGGGCAGAAAAGACGTGTTTC‑GCGGGCTGATCCATc < 3:247876/145‑1 (MQ=255) cACTTGCAGGCTCTGCAAGCCATCGCGCAGGCCGACTTCATTGATTGT‑TATTGTTGTCATCGCGGTCTCTCTGTCTGAAGCGTTGCGCCAGACTAAGAGCTGGATGACGGGCAGAAAAGACGTGTTTC‑GCGGGCTGATCCATCGTCAg < 3:400812/148‑1 (MQ=255) aCTTGCAGGCTCTGCAAGCCATCGCGCAGGCCGACTTCATTGATTGT‑TATTGTTGTCATCGCGGTCTCTCTGTCTGAAGCGTTGCGCCAGACTAAGAGCTGGATGACGGGCAGAAAAGACGTGTTTC‑GCGGGCTGATCCATCGTCAGc < 7:195988/148‑1 (MQ=255) aGGCTCTGCAAGCCATCGCGCAGGCCGACTTCATTGATTGT‑TATTGTTGTCATCGCGGTCTCTCTGTCTGAAGCGTTGCGCCAGACTAAGAGCTGGATGACGGGCAGAAAAGACGTGTTTC‑GCGGGCTGATCCATCGTCAGCCACGAt > 5:334326/1‑148 (MQ=255) gCTCTGCAAGCCATCGCGCAGGCCGACTTCATTGATTGT‑TATTGTTGTCATCGCGGTCTCTCTGTCTGAAGCGTTGCGCCAGACTAAGAGCTGGATGACGGGCAGAAAAGACGTGTTTC‑GCGGGCTGATCCATCGTCAGCCACGATgg < 6:388600/148‑1 (MQ=255) gCTCTGCAAGCCATCGCGCAGGCCGACTTCATTGATTGT‑TATTGTTGTCATCGCGGTCTCTCTGTCTGAAGCGTTGCGCCAGACTAAGAGCTGGATGACGGGCAGAAAAGACGTGTTTC‑GCGGGCTGATCCATCGTCAGCCACGATgg > 4:318019/1‑148 (MQ=255) gCTCTGAAATCCATCGCGCAGGCCGACTTCATTGATTGT‑TATTGTTGTCATCGCGTTCTCTCTGTCTGAAGCGTTGCGCCAGACTATGAGCTGGATGACGGGCAGAAAAGACGTGTTTC‑GCGGGCTGATCCATCGTCAGCCACGATGGa < 7:181674/149‑1 (MQ=255) cAAGCCATCGCGCAGGCCGACTTCATTGATTGT‑TATTGTTGTCATCGCGGTCTCTCTGTCTGAAGCGTTGCGCCAGACTAAGAGCTGGATGACGGGCAGAAAAGACGTGTTTC‑GCGGGCTGATCCATCGTCAGCCACGATGGATCAGc < 1:42512/148‑1 (MQ=255) aaGCCATCGCGCAGGCCGACTTCATTGATTGT‑TATTGTTGTCATCGCGGTCTCTCTGTCTGAAGCGTTGCGCCAGACTAAGAGCTGGATGACGGGCAGGAAAGACGTGTTTC‑GCGGGCTGATCCATCGTCAGCCACGATGGATCAGccc > 7:221866/1‑149 (MQ=255) aaGCCATCGCGCAGGCCGACTTCATTGATTGT‑TATTGTTGTCATCGCGGTCTCTCTGTCTGAAGCGTTGCGCCAGACTAAGAGCTGGATGACGGGCAGAAAAGACGTGTTTC‑GCGGGCTGATCCATCGTCAGCCACGATGGATCAGc < 3:318019/147‑1 (MQ=255) aGCCATCGCGCAGGCCGACTTCATTGATTGT‑TATTGTTGTCATCGCGGTCTCTCTGTCTGAAGCGTTGCGCCAGACTAAGAGCTGGATGACGGGCAGAAAAGACGTGTTTC‑GCGGGCTGATCCATCGTCAGCCACGATGGAt < 1:225533/142‑1 (MQ=255) aGCCATCGCGCAGGCCGACTTCATTGATTGT‑TATTGTTGTCATCGCGGTCTCTCTGTCTGAAGCGTTGCGCCAGACTAAGAGCTGGATGACGGGCAGAAAAGACGTGTTTC‑GCGGGCTGATCCATCGTCAGCCACGATGGAt > 2:225533/1‑142 (MQ=255) cATCGCGCAGGCCGACTTCATTGGTTGT‑TATTGTTGTCATCGCGGTCTCTCTGTCTGAAGCGTTGCGCCAGACTAAGAGCTGGATGACGGGCAGAAAAGACGTGTTTC‑GCGGGCTGATCCATCGTCATCCCAGAAGGATCAACCcgcg > 6:283753/1‑148 (MQ=255) aTCGCGCAGGCCGACTTCATTTATTGT‑TTTTGTTGTCATCGCGGTCTCTCTGTCTTAAGGGTTGCGCCAGACTAAGAGCTGGATGACGGGCATAAAAGACGTTTTTC‑GCGGGCTTATCCATCGACAGCCACGATGTATCAGCCCgcgc < 4:359305/148‑1 (MQ=255) aGGCCTACTTCATTGTTTGT‑TATTGTTGTCATCGCTGTCTCTCTGTCTGAAGCGTTGCGCCAGACTAAGAGCTGGATGACGGGCAGAAAAGACGTGTTTC‑GCGGGCTGATCCATCGTCAGCCACGATGGATCAGCCCGCGCCCTGCCa < 5:283753/148‑1 (MQ=255) aGGCCGACTTCATTGTTTGT‑TATTGTTGTCATCGCGGTCTCTCTGTCTGAAGCGTTGCGCCAGACTAAGAGCTGGATGACGGGCAGAAAAGACGTGTTTC‑GCGGGCTGATCCATCGTCCGCCACGATGGATCAGCCCGCGCCCTGCCa > 4:288015/1‑148 (MQ=255) gCCGACTTCATTGATTGT‑TATTGTTGTCATCGCGGTCTCTCTGTCTGAAGCGTTGCGCCAGACTAAGAGCTGGATGACGGGCAGAAAAGACGTGTTTC‑GCGGGCTGATCCATCGTCAGCCACGATGGATCAGCCCGCGCCCTGCCAgg > 5:164960/1‑148 (MQ=255) cGACTTCATTCATTGT‑TATTGTTGTCATCGCGGGCGCTCTGTCTGACGCGTTGCGCCAGACTAAGAGCTGGATGACGGGCAGAAAACACGTGTTTC‑GCGGGCTGATCCATCGTCAGCCACGATGGATCAGCCCGCGCCCTGCCAGGCCg < 2:112511/149‑1 (MQ=255) ttCATTGATTGT‑TATTGTTGTCATCGCGGTCTCTCTGTCTGAAGCGTTGCGCCAGACTAAGAGCTGGATGACGGGCAGAAAAGACGTGTTTC‑GCGGGCTGATCCATCGTCAGCCACGATGGAt < 2:400374/123‑1 (MQ=255) ttCATTGATTGT‑TATTGTTGTCATCGCGGTCTCTCTGTCTGAAGCGTTGCGCCAGACTAAGAGCTGGATGACGGGCAGAAAAGACGTGTTTC‑GCGGGCTGATCCATCGTCAGCCACGATGGAt > 1:400374/1‑123 (MQ=255) cATTGATTGT‑TATTGTTGTCATCGCGGTCTCTCTGTCTGAAGCGTTGCGCCAGACTAAGAGCTGGATGACGGGCAGAAAAGACGTGTTTC‑GCGGGCTGATCCATCGTCAGCCACGATGGATCAGCCCGCGCCCTGCCAGGCCGGTGCa > 4:135862/1‑148 (MQ=255) cATTGACTGT‑TATTGTTGTCATCGCGGTCTCTCTGTCTGAAGCGTTGCGCCAGACTAAGAGCTGGATGACGGGCAGAAAAGACGTGTTTC‑GCGGGCTGATCCATCGTCAGCCACGATGGATCAGCCCGCGCCCTGCCAGGCCGGTGCAc > 8:118939/1‑149 (MQ=255) attgt‑tattgttGTCATCGCGGTCTCTCTGTCTGAAGCGTTGCGCCAGACTAAGAGCTGGATGACGGGCAGAAAAGACGTGTTTC‑GCGGGCTGATCCATCGTCAGCCACGATGGAt > 2:296277/1‑116 (MQ=255) attgt‑tattgttGTCATCGCGGTCTCTCTGTCTGAAGCGTTGCGCCAGACTAAGAGCTGGATGACGGGCAGAAAAGACGTGTTTC‑GCGGGCTGATCCATCGTCAGCCACGATGGAt < 1:296277/116‑1 (MQ=255) attgt‑tattgttGTCATCGCGGTCTCTCTGTCTGAAGCGTTGCGCCAGACTAAGAGCTGGATGACGGGCAGAAAAGACGTGTTTC‑GCGGGCTGATCCATCGTCAGCCACGATGGATCAGCCCGCGCCCTGCCAGGCCGGTGCACgcag > 7:88149/1‑148 (MQ=255) ttgttgTCATCGCGGTCTCTCTGTCTGAAGCGTTGCGCCAGACTAAGAGCTGGATGACGGGCAGAAAAGACGTGTTTC‑GCGGGCTGATCCATCGTCAGCCACGATGGATCAGCCCGCGCCCTGCCAGGCCGGTGCACGCAGCAACAggt > 2:114438/1‑149 (MQ=255) ttgttgTCATCGCGGTCTCTCTGTCTGAAGCGTTGCGCCAGACTAAGAGCTGGATGACGGGCAGAAAAGACGTGTTTC‑GCGGGCTGATCCATCGTCAGCCACGATGGATCAGCCCGCGCCCTGCCAGGCCGGTGCACGCAGCAACAg < 3:135862/147‑1 (MQ=255) ggtggtCATCGCGGTCTCTCTGTCTTACGCGTTGCGCCAGACTATGAGCTGGTTGCCGGGACTAAAAGCCGTGTTTC‑GCGGGCTGATCCATCGTCCGCCACGTTGGACCAGCCCGCGCCCTGCCAGGCCGGTGCACGCAGCAACAgg < 4:301104/143‑1 (MQ=255) aTCGCGGTCTCTCTGTCTGCCGCGTTGCGCCAGACTAAGAGCTGGATTACGGGCAGAAAAGACGTGTTTC‑GCGGGCTTATCCATCGTCCGCCACGATGTATCAGCCCGCGCCCTGCCAGGCCGGTGCACGCAGCAACAGGTGGTCAAGc < 8:305169/149‑1 (MQ=255) cgctctGTCTGAAGCGTGGCGCCAGACTAAGACCGGGATGACGGGCAGAAAACCCGTGTGTC‑GCGGGCTGATCCATCGCCACCCACGATGTATCAGCCCGCGCCCTGCCAGGCCGGTGCACGCAGCAACAGGTGGTCAAGCAGGCgcc < 3:288015/146‑1 (MQ=255) aaGCGTTGCGCCAGACTAAGAGCTGGATGACGGGCAGAAAAGACGTGTTTC‑GCGGGCTGATCCATCGTCAGCCACGATGGATCAGCCCGCGCCCTGCCAGGCCGGTGCACGCAGCAACAGGTGGTCAAGCAGGCGCCGAGCCGACAG‑c > 8:91064/1‑148 (MQ=255) aaGCGTTGCGCCAGACTAAGAGCTGGATGACGGGCAGAAAAGACGTGTTTC‑GCGGGCTGATACATCGTCAGCCACGATGGATCAGCCCGCGCCCTGCCAGGCCGGTGCCCGCAGCAACAGGTGGTCAAGCAGGCGCCGAGCCGACAG‑c > 5:45480/1‑148 (MQ=255) gCGTTGCGCCAGACTAAGAGCTGGATGACGGGCAGAAAAGACGTGTTTC‑GCGGGCTGATCCATCGTCAGCCACGATGGATCAGCCCGCGCCCTGCCAGGCCGGTGCACGCAGCAACAGGTGGTCAAGCAGGCGCCGAGCCGACAg > 3:326542/1‑145 (MQ=255) gcgaattaCTAAGTGTTGTTTGAGGGGCTGAAAATCGGTTTTTC‑GCGGGCGTTTCCATCGTCTGCCACTTTGGATCTGCCCGCGCCCTGCCAGGCCGGTGCACGCAGCAACAGGTGGTCAAGCAGGCGCCGAGCCGACAG‑CGAGAGc < 6:164960/140‑1 (MQ=255) cgcCAGACTAAGAGCTGGATGACGGGCAGAAAAGACGTGTTTC‑GCGGGCTGATCCATCGTCAGCCACGATGGATCAGCCCGCGCCCTGCCAGGCCGGTGCACGCAGCAACAGGTGGTCAAGCAGGCGCCGAGCCGACAG‑CGAGAGCgt < 8:88149/148‑1 (MQ=255) cgcCAGACTAAGAGCTGGATGACGGGCAGAAAAGACGTGTTTC‑GCGGGCTGATCCATCGTCAGCCACGATGGATCAGCCCGCGCCCTGCCAGGCCGGTGCACGCAGCAACAGGTGGTCAAGCAGGCGCCGAGCCGACAG‑CGAGAGCgt < 1:114438/148‑1 (MQ=255) cgcCAGACTAACAGCTGGATTACGGGCAGAAAACACGTGTGGC‑GCGGGCTGATCCATCGTCAGCCACGATGGATCAGCCCGCGCCCTGCCAGGCCGGTGCACGCAGCAACAGGTGGTCAAGCAGGCGCCGAGCCGACAG‑CGAGAGCgtg < 1:270684/149‑1 (MQ=255) ataCTAAGAGCTGGATTCCGGGCATAAAAGACGGGTTTCGGG‑GGCTGATCAATCGTCAGCCACGATGTATCAGCCCGCGCCCTGCCAGGCCGGTGCACGCAGCAACAGGTGGTCAAGCAGGCGCCGAGCCGACAG‑CGAGAGCGTGTGc < 4:326542/146‑1 (MQ=255) aCTAAGAGCTGGATGACGGGCAGAAAAGACGTGTTTC‑GCGGGCTGATCCATCGTCAGCCACGATGGATCAGCCCGCGCCCTGCCAGGCCGGTGCACGCAGCAACAGGTGGTCAAGCAGGCGCCGAGCCGACAG‑CGAGAGCGTGTGCCg > 6:94918/1‑148 (MQ=255) tAAGAGCTGGATGACGGGCAGAAAAGACGTGTTTC‑GCGGGCTGATCCATCGTCAGCCACGATGGATCAGCCCGCGCCCTGCCAGGCCGGTGCACGCAGCAACAGGTGGTCAAGCAGGCGCCGAGCCGACAG‑CGAGAGCGTGTGCCGGt > 4:330070/1‑148 (MQ=255) agagCTGGATGACGGGCAGAAAAGACGTGTTTC‑GCGGGCTGATACGTCGTGCGCCACGATGGGTCAGCCCGCGCCCTGCCAGGGCGGGGGCCGCAGCAACAGGTGGTGAAGCAGGCGGCGGGGCGGCCG‑CGGGAGCGGGGGCCGGtgg > 4:68503/1‑146 (MQ=255) cgagcgcGGGCAGAAAAGACGGGTTTC‑GCGGGCGGATCCATCGTCGGCCACGAGGGATCAGCCCGCGCCCTGCCAGGCCGGTGCACGCAGCAACAGGTGGTCAAGCAGGCGCCGAGCCGACAG‑CGAGAGCGTGTGCCGGTCGCGCATGc < 7:95551/143‑1 (MQ=255) tGACGGGCATAAAAGACGTGTTTC‑GCGGGCTGATCCATCGTCAGCCACGATGGATCAGCCCGCGCCCTGCCAGGCCGGTGCACGCAGCAACAGGTGGTCAAGCAGGCGCCGAGCCGACAG‑CGAGAGCGTGTGCCGGTCGCGCATGCAg < 5:375577/148‑1 (MQ=255) gACGGGCAGAAAAGACGTGTTTC‑GCGGGCTGATCCATCGTCAGCCACGATGGATCAGCCCGCGCCCTGCCAGGCCGGTGCACGCAGCAACAGGTGGTCAAGCAGGCGCCGAGCCGACAG‑CGAGAGCGTGTGCCGGTCGCGCATGCAGAt > 8:274235/1‑149 (MQ=255) gggCAGAAAAGACGTGTTTC‑GCGGGCTGATCCATCGTCGGCCACGATGGATCAGCCCGCGCCCTGCCAGGCCGGTGCACGCAGCAACAGGTGGTCAAGCAGGCGCCGAGCCGACAG‑CGAGAGCGTGTGCCGGTCGCGCATGc > 8:95551/1‑142 (MQ=255) gggCAGAAAAGACGTGTTTC‑GCGGGCTGATCCATCGTCAGCCACGATGGATCAGCCCGCGCCCTGCCAGGCCGGTGCACGCAGCAACAGGTGGTCAAGCAGGCGCCGAGCCGACAG‑CGAGAGCGTGTGCCGGTCGCGCATGCAGATGa > 4:195294/1‑148 (MQ=255) gCAGAAAAGACGTGTTTC‑GCGGGCTGATCCATCGTCAGCCACGATGGATCAGc < 4:77362/53‑1 (MQ=255) gCAGAAAAGACGTGTTTC‑GCGGGCTGATCCATCGTCAGCCACGATGGATCAGCCCGCGCCCTGCCAGGCCGGTGCACGCAGCAACAGGTGGTCAAGCCGGCGCCGAGCCGACAG‑CGAGAGCGTGTGCCGGTCGCGCATGCAGATGACg > 1:173318/1‑148 (MQ=255) aaaaGACGTGTTTC‑GCGGGCTGATCCATCGTCAGCCACGATGGATCAGCCCGCCCCATGCCAGGCCGGTGCCCGCAGCAACAGGTGGTAAAGCAGGACACGCGCC‑TCAGCCGACAGCGAGTGCCGGTCCCCCATCCGGTTGACGAAtgc > 8:291124/1‑147 (MQ=255) gtgtTTC‑GCGGGCTGATCCATCGTCAGCCACGATGGATCAGCCCGCGCCCTGCCAGGCCGGTGCACGCAGCAACAGGTGGTCAAGCAGGCGCCGAGCCGACAG‑CGAGAGCGTGTGCCGGTCGCGCATGCAGATGACGAATTCACCAAgc < 7:91064/149‑1 (MQ=255) | GCTGCTGTCGGCATGATCACTTGCAGGCTCTGCAAGCCATCGCGCAGGCCGACTTCATTGATTGT‑TATTGTTGTCATCGCGGTCTCTCTGTCTGAAGCGTTGCGCCAGACTAAGAGCTGGATGACGGGCAGAAAAGACGTGTTTC‑GC‑GGCTGATCCATCGTCAGCCACGATGGATCAGCCCGCGCCCTGCCAGGCCGGTGCACGCAGCAACAGGTGGTCAAGCAGGCGCCGAGCCGACAG‑CGAGAGCGTGTGCCGGTCGCGCATGCAGATGACGAATTCACCAAGC > NC_002947/3845557‑3845842 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |