Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_002947196,3510CG21.9% 248.7 / 78.3 129T619T (ACC→ACG) PP_0168putative surface adhesion protein
Reads supporting (aligned to +/- strand):  ref base C (44/56);  new base G (16/12);  total (60/69)
Fisher's exact test for biased strand distribution p-value = 2.85e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.49e-01
Rejected as consensus: Frequency below/above cutoff threshold.

Only 100 of 129 total aligned reads displayed.

GACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCG‑TCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCA‑TCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACGC  >  NC_002947/196204‑196496
                                                                                                                                                   |                                                                                                                                                   
gACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCa                                                                                                                                                    <  7:58276/149‑1 (MQ=39)
  ccACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCAtt                                                                                                                                                  <  2:285449/149‑1 (MQ=39)
  ccACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCAtt                                                                                                                                                  <  2:76381/149‑1 (MQ=39)
  ccACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTCAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCa                                                                                                                                                    >  5:79725/1‑147 (MQ=255)
   cACGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCAtt                                                                                                                                                  >  6:201573/1‑148 (MQ=21)
        tCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGt                                                                                                                                             <  6:125499/148‑1 (MQ=39)
          aaCGACTCGGTCGACACCACTACCGCGACCGTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTg                                                                                                                                           >  1:36778/1‑148 (MQ=255)
           aCGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGaa                                                                                                                                         <  7:343072/149‑1 (MQ=39)
           aCGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGa                                                                                                                                          <  5:349219/148‑1 (MQ=39)
            cGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGaa                                                                                                                                         <  6:79725/148‑1 (MQ=39)
                  ggTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCgg                                                                                                                                    >  6:316332/1‑147 (MQ=39)
                  ggTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGc                                                                                                                                   >  7:358356/1‑148 (MQ=39)
                   gTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGc                                                                                                                                   <  5:316332/147‑1 (MQ=39)
                   gTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCa                                                                                                                                  >  1:206831/1‑148 (MQ=39)
                   gTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCa                                                                                                                                  >  8:294423/1‑148 (MQ=39)
                         accacTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCa                                                                                                                           <  2:36778/149‑1 (MQ=38)
                          ccacTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCa                                                                                                                           <  5:298369/148‑1 (MQ=17)
                          ccacTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAg                                                                                                                          <  8:358356/149‑1 (MQ=17)
                           cacTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAgg                                                                                                                         >  2:39955/1‑149 (MQ=17)
                           cacTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAgg                                                                                                                         <  2:86218/149‑1 (MQ=17)
                           cacTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAgg                                                                                                                         <  7:294423/149‑1 (MQ=37)
                           cacTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAgg                                                                                                                         >  1:245625/1‑149 (MQ=37)
                           cacTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAgg                                                                                                                         >  1:203262/1‑149 (MQ=37)
                           cacTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAACGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGACGGCAAGACCCAg                                                                                                                          >  6:171707/1‑148 (MQ=12)
                            accaCCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAgg                                                                                                                         <  5:299043/145‑1 (MQ=0)
                            acTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCCCTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAgg                                                                                                                         >  6:299041/1‑148 (MQ=17)
                            acTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGtt                                                                                                                                            >  7:90488/1‑129 (MQ=35)
                            acTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAgg                                                                                                                         <  3:21248/148‑1 (MQ=37)
                             cTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCa                                                                                                                           >  7:108230/1‑145 (MQ=14)
                             cTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCa                                                                                                                           <  8:108230/145‑1 (MQ=14)
                             cTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAgg                                                                                                                         >  4:353640/1‑147 (MQ=35)
                                ccGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAg                                                                                                                     >  6:405111/1‑148 (MQ=34)
                                ccGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAg                                                                                                                     >  5:132126/1‑148 (MQ=34)
                                  gcgACCCTGCCGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACACTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGTCAAAACCCAGGGCAGCg                                                                                                                   >  5:131604/1‑148 (MQ=11)
                                  gcgACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCg                                                                                                                   >  3:345989/1‑148 (MQ=34)
                                   cgACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCG‑t                                                                                                                 <  4:345989/148‑1 (MQ=34)
                                      cccTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCG‑TCGa                                                                                                              >  4:212995/1‑148 (MQ=12)
                                       ccTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCG‑TCGac                                                                                                             >  4:241505/1‑147 (MQ=12)
                                         tGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCG‑TCGATTTc                                                                                                          >  8:7874/1‑149 (MQ=34)
                                           aCGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTTACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCG‑TCGATTTc                                                                                                          <  2:258927/147‑1 (MQ=21)
                                            cGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCG‑TCGACTTc                                                                                                          <  3:338394/146‑1 (MQ=255)
                                                  gCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTCACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCG‑TCGATTTCCAGAcccc                                                                                                  >  4:301739/1‑148 (MQ=21)
                                                   cccGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCG‑TCGATTTCCAGACCCCgg                                                                                                <  2:111787/149‑1 (MQ=34)
                                                   cccGTCGGTCACCGAAGGCGGCGTGATCACATACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACAGTGACCCTGTCCAACGGCCAAAACATAACAGTTGAAGCCGGCAAAACCCAGGGCAGCG‑TCGATTTCCAGaacgca                                                                                                 >  4:170059/1‑143 (MQ=11)
                                                    ccGTCGGGCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTGGAAGCCGGCAAAACCCAGGGCAGCG‑TCGATTTCCAGACCCCGGc                                                                                               <  2:128172/149‑1 (MQ=21)
                                                    ccGTCGCTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTAAGCAACACTGCCCAGACGCCGGTGACCGTGACCCCGACCAACCGCCAAACGATTACCGTTGAAGCCTGCAAAACCAAGCGCAGCC‑TCCACTTACAGACCCCgcc                                                                                               >  2:317912/1‑147 (MQ=11)
                                                      gTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGAACCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCAGGCAAAACCCAGGGCAGCG‑TCGATTTCCAGCACCCGGc                                                                                               >  4:206123/1‑147 (MQ=255)
                                                           tCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCG‑TCGATTTCCAGACCCCGGCGAATGAc                                                                                        <  1:369792/149‑1 (MQ=34)
                                                             aCCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCG‑TCGACTTCCAGACCCCGGCGAATGACGt                                                                                      <  7:120837/149‑1 (MQ=255)
                                                             aCCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCAGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCG‑TCGACTTCCa                                                                                                        >  4:41339/1‑131 (MQ=11)
                                                              ccGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCTGCAAAACCCAGGGCAGCGATCGACTTCCAGACCCCGGCGAATGACGt                                                                                      <  1:25442/149‑1 (MQ=11)
                                                              ccGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCAGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCG‑TCGACTTCCAg                                                                                                       <  3:41339/131‑1 (MQ=11)
                                                               cGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCG‑TCGACTTCCAGACCCCGGCGAATGACGt                                                                                      >  3:330197/1‑147 (MQ=255)
                                                               cGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCG‑TCGACTTCCAGACCCCGGCGAATGACGTc                                                                                     >  8:1348/1‑148 (MQ=255)
                                                               cGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCG‑TCGACTTCCAGACCCCGGCGAATGACGTc                                                                                     >  7:88461/1‑148 (MQ=255)
                                                                gAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCG‑TCGACTTCCAGACCCCGGCGAATGACGTCt                                                                                    <  6:225991/148‑1 (MQ=255)
                                                                gAAGGCGCCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCCGTGACAATGACCCTGTCAAACGGCCAAACCATTACCGAAGAAGACGGCAATCCCCAGGGCAGCG‑TCGATTTCCATACACCGGAGAATGACGTCTa                                                                                   >  8:360576/1‑149 (MQ=11)
                                                                  aGGCGGCGGGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACTGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCG‑TCGACTTCCAGACCCCGGCGAATGACGTCTac                                                                                  <  8:188604/148‑1 (MQ=11)
                                                                      ggcgTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCG‑TCGATTTCCAGACCCCGGCGAATGAc                                                                                        >  7:375019/1‑138 (MQ=34)
                                                                      ggcgTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCG‑TCGATTTCCAGACCCCGGCGAATGACGTCTAcaacaa                                                                             >  8:256316/1‑149 (MQ=34)
                                                                       gcgTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCG‑TCGATTTCCAGACCCCGGCGAATGACGTCTACaacaac                                                                            >  1:291207/1‑149 (MQ=34)
                                                                       gcgTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCG‑TCGATTTCCAGACCCCGGCGAATGACGTCTACaacaac                                                                            <  7:38679/149‑1 (MQ=34)
                                                                       gcgTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCAAGGGCAGCG‑TCGATTTCCAGACCCCGGCGAATGACGTCTAcaacaa                                                                             >  5:195819/1‑148 (MQ=21)
                                                                           gATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAg                                                                                                                          >  3:231060/1‑100 (MQ=11)
                                                                            aTCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAgg                                                                                                                         <  4:231060/100‑1 (MQ=11)
                                                                             tCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCG‑TCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTc                                                                       <  2:104218/148‑1 (MQ=34)
                                                                               acctACACCGGGACCCTGACCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTACAACGGCAAAACCATTACCCTTGAAGCCGGCAAAACCCAGTGCAGCT‑TCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGa                                                                     <  4:198792/145‑1 (MQ=1)
                                                                                cTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGTCAGTCACCCTGTCCAACGTCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCG‑TCGATTTCCAGACCCCGGCGAATGACGTCTACAACTACGGTTCGAcc                                                                   <  2:89734/149‑2 (MQ=255)
                                                                                cTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCg                                                                                                                                     >  5:365449/1‑84 (MQ=32)
                                                                                 ttACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCgg                                                                                                                                    <  6:365449/84‑1 (MQ=31)
                                                                                 ttACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCG‑TCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTg                                                                  >  2:344355/1‑149 (MQ=255)
                                                                                   acacCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCG‑TCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGt                                                                 <  8:42713/148‑1 (MQ=34)
                                                                                   acacCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCG‑TCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGt                                                                 >  7:4440/1‑148 (MQ=34)
                                                                                    cacCGTGACCCTTAGAAATCCTGCCCATACGCCGGTTAAAGTTACCCTGTCCAACGGCAAAACAATTACCGTTGAAGCCGGAAAAACCCAGGGCTGCG‑TCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCa                                                               <  1:106839/149‑1 (MQ=11)
                                                                                    cacCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCG‑TCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTc                                                                <  1:369100/148‑1 (MQ=255)
                                                                                       cGTGACCCTGAGCAATCCTGCCCAGACGCAGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCG‑TCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAgt                                                             >  6:181792/1‑148 (MQ=25)
                                                                                          gACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCG‑TCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAgtgt                                                           >  6:122256/1‑147 (MQ=37)
                                                                                          gACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCG‑TCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTc                                                          <  6:195819/148‑1 (MQ=37)
                                                                                            cccTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCG‑TCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCa                                                         >  3:368211/1‑147 (MQ=11)
                                                                                             ccTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCG‑TCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCAcc                                                       >  8:354703/1‑148 (MQ=37)
                                                                                               tGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCG‑TCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCa                                                         <  1:390142/144‑1 (MQ=37)
                                                                                                 aGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCG‑TCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCA‑Tc                                                   >  7:100478/1‑147 (MQ=37)
                                                                                                  gCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCG‑TCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCA‑Tc                                                   <  3:314199/146‑1 (MQ=37)
                                                                                                      tCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCG‑TCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCA‑TCGAGAAc                                             <  6:132126/148‑1 (MQ=17)
                                                                                                      cccTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCG‑TCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAgc                                                             <  7:107143/132‑2 (MQ=9)
                                                                                                           cccAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCG‑TCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCA‑TCGAGAACGCCAc                                        >  3:65310/1‑148 (MQ=37)
                                                                                                             cAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCG‑TCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCA‑TCGAGAACGCCACcg                                      <  5:405111/148‑1 (MQ=38)
                                                                                                                aagCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCG‑TCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCA‑TCGAGAACGCCACcggcg                                   <  3:206123/146‑1 (MQ=39)
                                                                                                                aCGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCG‑TCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTGGACTGTCAGTGTCACCA‑TCGAGAACGCCACcggcgg                                  >  7:24137/1‑149 (MQ=255)
                                                                                                                  gCCGGTGACAGTTACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGTCAAAACCCAGGGCAGCG‑TCGATTTCCAGACCCCGCCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCA‑TCGAGAACGCCACCGCCGGTa                                <  7:365227/149‑1 (MQ=255)
                                                                                                                   ccGGTGCCAGTGCCCCTGTCCACCGGCCACCCCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCG‑GCGATTTCCAGCCCCCGGCGCATGCCGTCTCCAACCCCGGTTCGACTGTCAG‑GTGCCCACTCGAGAACGCCACCGGCGGTaa                               >  7:23657/1‑149 (MQ=11)
                                                                                                                       tGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCG‑TCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCA‑TCGAGAACGCCACCGGCGGTAATTTc                           <  7:256316/149‑1 (MQ=39)
                                                                                                                          cAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCG‑TCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCA‑TCGAGAACGCCACCGGCGGTAATTTCGAg                        <  2:206831/149‑1 (MQ=38)
                                                                                                                               aCCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCG‑TCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCA‑TCGAGAACGCCACCGGCGGTAATTTCGAGCAAc                    <  2:245625/148‑1 (MQ=37)
                                                                                                                                     tCCACCGGCCAAACCCTTACCGTTGAAGCCGGCAAACCCCAGGGCAGCG‑TCGATGTCCAGACCCCGGCGAATGACGGCTACAACAACGGTGCGACTGTCAGTGTCACCA‑TCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGAcccc             <  8:23657/149‑1 (MQ=11)
                                                                                                                                         aCGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCG‑TCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCA‑TCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAAt         <  8:100478/149‑1 (MQ=38)
                                                                                                                                             ccAAACCATTACCGTTGAAGCCGGCAAAACCGAGGGCAGCG‑TCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCA‑TCGAGAAGGCCACCGGCGGTAATTTCGTGCAACTGACCCCGAATCCGa     <  8:4440/149‑1 (MQ=255)
                                                                                                                                               aaaCCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCG‑TCGATTTCCAGACCCCGGCGAATGACGt                                                                                      >  8:266417/1‑67 (MQ=35)
                                                                                                                                                aaCCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCG‑TCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCA‑TCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACGc  <  1:161657/149‑1 (MQ=39)
                                                                                                                                                 aCCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCG‑TCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCA‑TCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACGc  <  5:211478/148‑1 (MQ=39)
                                                                                                                                                   |                                                                                                                                                   
GACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCG‑TCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCA‑TCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACGC  >  NC_002947/196204‑196496

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑