| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_002947 | 278,744 | +A | intergenic (‑239/+75) | PP_0224 ← / ← sctC | DszC family monooxygenase/sulfur compound ABC transporter ATP‑binding protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 278,742 | 1 | . | A | 90.7% | 160.5 / 10.6 | 54 | intergenic (‑237/+77) | PP_0224/sctC | DszC family monooxygenase/sulfur compound ABC transporter ATP‑binding protein |
| Reads supporting (aligned to +/- strand): ref base . (4/1); new base A (19/30); total (23/31) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.51e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
ATGTCGCTACAGCTGATCGCGACAGACGTGTGCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGGT‑A‑A‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGCCGCAGTCCCGAGGAACTTGCGCAAGAACTGCCGCGTACGCTCTTCCTTCGGCGCT > NC_002947/278595‑278885 | aTGTCGCTACAGCTGATCGCGACAGACGTGTGCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGGt < 3:72597/148‑1 (MQ=255) gCTACAGCTGATCGCGACAGACGTGTGCTGGTCCGGTGGTCCGGTATATATACCCTAATCATTTATAAAATTTTTATCAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGGT‑A‑A‑accc > 7:240067/1‑148 (MQ=255) cTACAGCTGATCGCGACAGACGTGTGCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGGT‑A‑A‑acccg > 1:273885/1‑147 (MQ=255) cTACAGCTGATCGCGACAGACGTGTGCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGGT‑A‑A‑acccg > 3:164184/1‑147 (MQ=255) cAGCTGATCGCTACAGACGTGTGCTGGTCCGGTGTTCAAGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGGTAA‑A‑CCCGCt < 1:124511/148‑1 (MQ=255) cAGCTGATCGCGACAGACGTGTGCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGGTAA‑A‑CCCGCTc < 3:22769/149‑1 (MQ=255) cTGATCGCGACAGACGTGTGCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGGTAA‑A‑CCCGCTCCTa > 6:71822/1‑149 (MQ=255) gACAGACGTGTGCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGGTAA‑A‑CCCGCTCCTACACACATg < 5:178525/149‑1 (MQ=255) gACAGACGTGTGCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGGTAA‑A‑CCCGCTCCTACACACATg < 4:247867/149‑1 (MQ=255) cGTGTGCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGGTAA‑A‑CCCGCTCCTACACACATGCCTCaa < 4:38648/149‑1 (MQ=255) gtgCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGGTAA‑A‑CCCGCTCCTACACACATGCCTCAAGa > 8:296624/1‑148 (MQ=255) cTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGGTAA‑A‑CCCGCTCCTACACACATGCCTCAAGATCtg > 1:156009/1‑149 (MQ=255) tggtccggtggtccggTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGGTAA‑A‑CCCGCTCCTACACACATGCCTCAAGATCtgt > 8:141709/1‑149 (MQ=255) tggtccggtggtccggTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGGTAA‑A‑ACCGCTCCTACACACATGCCTCAAGATCtgt > 7:74042/1‑149 (MQ=255) ccgtttgtccggtATATATACCCTAATGATTTATAAAATTTTTATGAACTAAGTTTTTTGAATATTTATAGAATGGTGATTTGTTACAGAGGTGCCGGGCTCTTCGCGTGTAA‑A‑CCCGCTCCTACACACATTCCTCAAGATCTGTGCa < 1:364730/142‑1 (MQ=255) ggtggtccggtATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGGTAA‑A‑CCCGCTCCTACACACATGCCTCAAGAt < 7:207907/139‑1 (MQ=255) ggtggtccggtATAAATACACTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGGTAA‑A‑CCCGCTCCTACACACATGCCTCAAGAt > 8:207907/1‑139 (MQ=255) tatatataCCATAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGGTAA‑A‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCgg < 7:296624/148‑1 (MQ=255) taCCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGGTAA‑A‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGTTTAc < 5:71822/148‑1 (MQ=255) cccTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGGTAA‑A‑CCCGCTCCTACACACATGCCTc < 6:29545/116‑1 (MQ=255) cccTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGGTAA‑A‑CCCGCTCCTACACACATGCCTc > 5:29545/1‑116 (MQ=255) cccTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGGTAA‑A‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGTTTAccc < 1:272226/148‑1 (MQ=255) cccTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGGTAA‑A‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGTTTACCcg < 2:156009/149‑1 (MQ=255) cccTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGGTAA‑A‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGTTTACCcg < 5:152568/149‑1 (MQ=255) ccTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGGTAA‑A‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGTTTACCcgc < 7:141709/149‑1 (MQ=255) tAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGGTAA‑A‑CCCGCTCCTACACCCATGCCTCAAGATCTGTGCACTGTAGGAGCGGGTTTACCcgcg > 2:264709/1‑148 (MQ=255) tAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGGTAA‑A‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGTTTACCCGCGa < 6:321594/149‑1 (MQ=255) tAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGGTAA‑A‑AACGCTCCTTAACACATGGCGCAAGATATGTGGACTGTAGGAGCGGGTTTTACcgcg > 3:204776/1‑148 (MQ=255) tGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGGT‑ATA‑CCCCCTACTACACACATTCCTCAAGATCTGTTCACTGTAGGAGCGGGTTTAAACGCGaaat > 6:326647/1‑148 (MQ=255) aTTTAAAATATTTTTATTAACAAACTTTTTGGAATATTTATCGAAGGGGGATTTGTTACAGCGGGGCCGGGCTCTTCGGGGGTAA‑A‑CCCGCTCCTACACACATGCCTCAAGATCTGTCCACTGTAGGAGCGGGTTTACCCGCGAAAgg < 2:299439/148‑1 (MQ=255) ttATAATTTTTTTATTAACTATCTTTTTTTAATTTTTATAGACGGGGTATTTGTTACAGAGGTGCCGGGCTCTTCGCGGGTAA‑A‑CCCGCTCCTACACACATGCCTCAACATCTGTTCACTGTCGGAGCGGGTTAACCCGCGAAAGGGc < 2:273885/148‑1 (MQ=255) taAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGGTAA‑A‑CCCGCTCCTACACACATGCCTCa < 4:121376/104‑1 (MQ=255) aTTTTAATGAACTAACTTTTTGGAAAATTTAAAGACGGGGGATTTGTTCCAGAGGTGCCGGGCTCTTCGCGGGTAA‑A‑CCCGCTCCAACACACATCCCTCAAGATCTGTCCACTGTCGGAGCGGGTTTACCCGCGAAAGGGCCGGAACAg < 6:207395/149‑1 (MQ=255) tttttATGAACTAACTTTTTGTAATATTTATAGAAGGGGCATTTGTTACAGAGGTGCCGGGCTCTTCGCGGGTAA‑A‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGAACAgg < 1:256976/149‑1 (MQ=255) ttttGAACTAATTTTTTGTAATATTTATAGATGGGGGATTTGTTACAGCGGGGCCGGGCTCTTCGGGGTTAA‑A‑CCCGCTCCTACACACTGGCCTCAATATCTGTGCACTGTCGGCGGGGGTTTACCCGCGAAAGGGCCGGAACAGGtt < 4:164184/145‑1 (MQ=255) aactaactTTTTGGAATATTTATAGAAGGGGGATTTGTTAGAGAGGTGCCGGGCTCTTCGCGGGTAA‑A‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCg > 6:69338/1‑149 (MQ=255) taactTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGTGGTGCCGGGCTCTTCGCGGGTAA‑A‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAg > 1:81578/1‑149 (MQ=255) tttATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGGTAA‑A‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGCCGCAGTCCCGAg > 3:275977/1‑148 (MQ=255) gAAGGGGTATTTGTTACAGAGGTGCCGGGCTCTTCGCGGGTAA‑A‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGCCGCAGTCCCGAGGAACTTg < 2:115364/149‑1 (MQ=255) aGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGGTAA‑A‑CCCGCTCCTACACACATGCCGCAAGATCTGTGCACTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGCCGCAGTCCCGAGGAACTTgcg > 2:23327/1‑149 (MQ=255) gggggATTTGTTACAGAGGTGCCGGGCTCTTCGCGGGTAA‑A‑CCCGCTCCTACACACATGCCTCAAGAt > 7:162133/1‑68 (MQ=255) gggggATTTGTTACAGAGGTGCCGGGCTCTTCGCGGGTAA‑A‑CCCGCTCCTACACACATGCCTCAAGAt < 8:162133/68‑1 (MQ=255) aTTTGTTACAGAGGTGCCGGGCTCTTCGCGGGTAA‑A‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGTTTACCCGCGaaa < 6:196636/96‑1 (MQ=255) ttACAGAGGTGCCGGGCTCTTCGCGGGTAA‑A‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGCCGCAGTCCCGAGGAACTTGCGCAAGAACTGcc > 6:357760/1‑149 (MQ=255) aCAGAGGTGCCGGGCTCTTCGCGGGTAA‑A‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGAACAGGTTTAc < 1:278199/107‑1 (MQ=255) aCAGAGGTGCCGGGCTCTTCGCGGGTAA‑A‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGAACAGGTTTAc > 2:278199/1‑107 (MQ=255) cAGAGGTGCCGGGCTCTGCGCGGGTAA‑A‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGCCGCAGTCCCGAGGAACTTGCGCAAGAACTGCcgc < 8:213880/148‑1 (MQ=255) gggcggggCTGTTCGCGGTT‑A‑ACCCCGAACCTACACACTTGCCTAAATATCTGTCCACTGTAGGCGCGGGTTAACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGCCGCAGTCCCGAGGAACTTGCGCAAGAACTGCCGCGTACg < 1:169125/143‑1 (MQ=37) gCCGGGCTCTTCGCGGGTAA‑A‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGa < 7:188088/104‑1 (MQ=255) gCCGGGCTCTTCGCGGGTAA‑A‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGa > 8:188088/1‑104 (MQ=255) ctTCGCGGGTAA‑A‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGCCGCAGTCCCGAGGAACTTGCGCAAGAACTGCCGCGTACGCTCTTCCTTCg > 1:343241/1‑149 (MQ=255) ttCGCGGGTAA‑A‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGa > 4:29856/1‑95 (MQ=255) ttCGCGGGTAA‑A‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGa < 3:29856/95‑1 (MQ=255) cgGGTAA‑A‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGCCGCAGTCCCGAGGAACTTGCGCAAGAACTGCCGCGTACGCTCTTCCTTCGGCGCt < 1:23327/149‑1 (MQ=255) cgGGTAA‑A‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGCCGCAGTCCCGAGGAACTTGCGCAAGAACTGCCGCGTACGCTCTTCCTTCGGCGCt < 4:275977/149‑1 (MQ=255) | ATGTCGCTACAGCTGATCGCGACAGACGTGTGCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGGT‑A‑A‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGCCGCAGTCCCGAGGAACTTGCGCAAGAACTGCCGCGTACGCTCTTCCTTCGGCGCT > NC_002947/278595‑278885 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |