| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_002947 | 1,070,248 | +GA | intergenic (+48/+94) | aroP‑I → / ← PP_0928 | aromatic amino acid transport protein/K+‑dependent Na+/Ca+ exchanger‑like protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 1,070,246 | 1 | . | G | 92.9% | 221.5 / 9.8 | 71 | intergenic (+46/+96) | aroP‑I/PP_0928 | aromatic amino acid transport protein/K+‑dependent Na+/Ca+ exchanger‑like protein |
| Reads supporting (aligned to +/- strand): ref base . (1/4); new base G (36/29); total (37/34) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.81e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| * | NC_002947 | 1,070,246 | 2 | . | A | 93.0% | 224.4 / 10.1 | 71 | intergenic (+46/+96) | aroP‑I/PP_0928 | aromatic amino acid transport protein/K+‑dependent Na+/Ca+ exchanger‑like protein |
| Reads supporting (aligned to +/- strand): ref base . (1/4); new base A (36/30); total (37/34) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.87e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
CCTGACGCCGCCGATTCGCATCTCGGTAATGCTGATCCCGGCATGGATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCCTGT‑‑G‑‑ATCGAGCGCCGCGCGGGCGGCGCTC‑GATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGCCCCTCAATGCTGCCTCCGCCAAGCACGCACAGTGGTGTACAG > NC_002947/1070098‑1070380 || ccTGACGCCGCCGATTCGCATCTCGGTAATGCTGATCCCGGCATGGATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCTCGCCAGGCTAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCCtgt < 5:155890/149‑1 (MQ=255)ccTGACGCCGCCGATTCGCATCTCGGTAATGCTGATCCCGGCATGGATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCCtgt > 6:185743/1‑149 (MQ=255) cTGACGCCGCCGATTCGCATCTCGGTAATGCTGATCCCGGCATGGATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCCtgt‑‑g < 6:262072/149‑1 (MQ=255) tGACGCCGCCGATTCGCATCTCGGTAATGCTGATCCCGGCATGGATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCCtgt > 1:322622/1‑147 (MQ=255) ctccgccgATTCTCATCTCGTTAATGCTGATCCCGGCATGTATCGCTGTGCTGTGGGTTGCTTTCACGCTGAAGACGGCTCGCCAGGCCAAGGGCTGATCGGGGTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCCTGT‑‑G‑‑agat < 6:362874/147‑4 (MQ=255) ctccgccgATTCGCATCTCGGTACTGCTGATCCCGGCATTGATCGCTGTGCTGTGGGTGGCTTTCACGCTGAAGACGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCCTGT‑‑G‑‑agat < 6:368167/147‑4 (MQ=255) cgccgcCGATTCGCATCTCGGTAATGCTGATCCCGGCATGGATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCCTGT‑‑G‑‑agat < 8:57165/149‑4 (MQ=255) ccgccgATTCGCATCTCGGTAATGCTGATCCCGGCATGGATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCCTGT‑‑G‑‑agatc > 2:101947/1‑144 (MQ=255) gATTCGCATCTCGGTAATGCTGATCCCGGCATGGATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCCTGTGAG‑‑ATCGAgcgc > 3:267728/1‑149 (MQ=255) tCGCATCTCGGTAATGCTGATCCCGGCATGGATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCCTGTGAG‑‑ATCGAGcgccgc > 4:18567/1‑149 (MQ=255) cGCATCTCGGTAATGCTGATCCCGGCATGGATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCCTGTGAG‑‑ATCGAGCGCcgcg > 8:250824/1‑149 (MQ=255) gCATCTCGGTAATGCTGATCCCGGCATGGATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCCTGTGAG‑‑ATCGAGCGCcgcgc > 3:24949/1‑149 (MQ=255) gCATCTCGGTAATGCTGATCCCGGCATGGATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCCTGTGAG‑‑ATCGAGCGCcgcgc > 6:103487/1‑149 (MQ=255) aTCTCGGTAATGCTGATCCCGGCATGGATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCCTGTGAG‑‑ATCGAGCGCCGCgcgg > 5:86965/1‑149 (MQ=255) ggTAATGCTGATCCCGGCATGGATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCCTGTGAG‑‑ATCGAGCGCCGCgcgggcg < 6:86965/147‑1 (MQ=255) ggTAATGCTGATCCCGGCATGGATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCCTGTGAG‑‑ATCGAGCGCCGCGCGggcggc < 1:56952/149‑1 (MQ=255) aTGCTGATCCCGGCATGGATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCCTGTGAG‑‑ATCGAGCGCCGCGCGGGCGGCGCt < 5:367303/148‑1 (MQ=255) aTGCTGATCCCGGCATGGATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCCTGTGAG‑‑ATCGAGCGCCGCGCGGGCGGCGCTc < 2:322622/149‑1 (MQ=255) cTGATCCCGGCATGGATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCCTGTGAG‑‑ATCGAGCGCCGCGCGGGCGGCGCTC‑Ga < 4:24949/148‑1 (MQ=255) cTGATCCCGGCATGGATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCCTGTGAG‑‑ATCGAGCGCCGCCCGCGCGGCGCTC‑GAt < 5:240080/149‑1 (MQ=38) tGATCCCGGCATGGATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCCTGTGAG‑‑ATCGAGCGCCGCGCGGGCGGCGCTC‑GAtc > 1:335529/1‑149 (MQ=255) aTCCCGGCATGGATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCCTGTGAG‑‑ATCGAGCGCCGCgcgggcg < 6:208754/137‑1 (MQ=255) aTCCAGGCATGGATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCCTGTGAG‑‑ATCGAGCGCCGCgcgggcg > 5:208754/1‑137 (MQ=255) cGGCATGGATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCCTGTGAG‑‑ATCGAGCGCCGCGCGGGCGGCGCTC‑GATCTCACAg < 7:250824/149‑1 (MQ=255) cATGGATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCCTGTGAG‑‑ATCGAGCGCCGCGCGGGCGGCGCTC‑GATCTCACAg > 1:104449/1‑146 (MQ=255) cATGGATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCCTGTGAG‑‑ATCGAGCGCCGCGCGGGCGGCGCTC‑GATCTCACAg < 2:104449/146‑1 (MQ=255) aTGGATCGCAGCGCTGTGGCTCGCGTTCCAGCTGACGAAGGCTCCCCACGCCAAGCGCTGCTCGCCCGTGCCCGTCAGGCGTCTGCCGGAAGGCTTTCGGCGCCTGTCAC‑‑AGCCAGCGCCGCGCGGGCCGCGCTC‑GATCTCACAGGCGa < 4:211418/149‑1 (MQ=255) ggATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCCTGTGAG‑‑ATCGAGCGCCGCGCGGGCGGCGCTC‑GATCTCACAGGCGAt > 1:238707/1‑148 (MQ=255) aTCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCCTGTGAG‑‑ATCGAGCGCCGCGCGGGCGGCGCTC‑GATCTCACAGGCGATGa > 2:228471/1‑148 (MQ=255) tCGCTGTGCTTTGGGTGGCTTTCAATCTGAAGAAGGCTCGCCAGGAGAAGGGCTGAGCGGGTTTGTTCGTAATGGGTATGCCGTTAGGTTTTCGGCGCCTGTGAG‑‑ATCGAGCGCCGCGCGGGCTGCGCTC‑GATCTCACAGGCGATGaaa < 6:87313/149‑1 (MQ=37) tCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCCTGTGAG‑‑ATCGAGCGCCGCGCGGGCGGCGCTC‑GATCTCACAGGCGATGaaa < 5:103487/149‑1 (MQ=255) gctgtgctgtGGGTGGCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCCTGTGAG‑‑ATCGAGCGCCGCGCGGGCGGCGCTC‑GATCTCACAGGCGATGAAAGc < 1:247074/149‑1 (MQ=255) tgggtggCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCCTGTGAG‑‑ATCGTGGGCCGGGCGGGCGGCGCTC‑GATCTCACAGGCGATGAAAGCCTAAAGGc < 2:112108/148‑1 (MQ=39) gtggCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCCTGTGAG‑‑ATCGAGCGCCGCGCGGGCGGCGCTC‑GATCTCACAGGCGATGAAAGCCTAAAGGCATGc > 2:327147/1‑149 (MQ=255) tggCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCCTGTGAG‑‑ATCGAGCGCCGCGCGGGCGgcgc < 3:72543/113‑1 (MQ=255) tggCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCCTGTGAG‑‑ATCGAGCGCCGCGCGGGCGgcgc > 4:72543/1‑113 (MQ=255) ggCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCCTGTGAG‑‑ATCGAGCGCCGCGCGGgcggcg < 6:188448/111‑1 (MQ=255) ggCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCCTGTGAG‑‑ATCGAGCGCCGCGCGGgcggcg > 5:188448/1‑111 (MQ=255) gCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCCTGTGAG‑‑ATCGAGCGCCGCGCGGGCGGCGCTC‑GATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTc > 6:297477/1‑149 (MQ=255) tttCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCCTGTGAG‑‑ATCGAGCGCCGCGCGGGCGGCGCTC‑GATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTg > 2:313074/1‑149 (MQ=255) tttCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCATAAGGGGTATGCCGTTAGGTTTTCGGCGCCTGTGAG‑‑ATCGAGCGCCGCGCGGGCGGCGCTC‑GATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTg > 3:245313/1‑149 (MQ=255) ttCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCCTGTGAG‑‑ATCGAGCGCCGCGCGGGCGGCGCTC‑GATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTgg > 7:276414/1‑149 (MQ=255) tCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCCTGTGAG‑‑ATCGAGCGCCGCGCGGGCGGCGCTC‑GATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTg < 5:185743/147‑1 (MQ=255) gaagaaGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCCTGTGAG‑‑ATCGAGCGCCGCGCGGGCGgcgc > 4:363021/1‑100 (MQ=37) gaagaaGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCCTGTGAG‑‑ATCGAGCGCCGCGCGGGCGgcgc < 3:363021/100‑1 (MQ=37) gaagGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCCTGTGAG‑‑ATCGAGCGCCGCGCGGGCGGCGCTC‑GAGCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGCcg > 5:201269/1‑149 (MQ=38) gCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCCTGTGAG‑‑ATCGAGCGCCGCGCGGGCGGCGCTC‑GATCTCACAGGCGATGAAAGCCTaaa > 2:24787/1‑121 (MQ=255) gCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCCTGTGAG‑‑ATCGAGCGCCGCGCGGGCGGCGCTC‑GATCTCACAGGCGATGAAAGCCTaaa < 1:24787/121‑1 (MQ=255) cTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCCTGTGAG‑‑ATCGAGCGCCGCGCGGGCGGCGCTC‑GATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTc < 1:327147/149‑1 (MQ=255) gCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCCTGTGAG‑‑ATCGAGCGCCGCGCGGGCGGCGCTCTGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTccc < 1:101947/149‑1 (MQ=38) ccAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCCTGTGAG‑‑ATCGAGCGCCGCGCGGGCGGCGCTC‑GATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGcc < 7:14245/134‑1 (MQ=255) ccAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCCTGTGAG‑‑ATCGAGCGCCGCGCGGGCGGCGCTC‑GATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGcc > 8:14245/1‑134 (MQ=255) ccAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCCTGTGAG‑‑ATCGAGCGCCGCGCGGGCGGCGCTC‑GATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCt > 6:325246/1‑149 (MQ=255) gCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCCTGTGAG‑‑ATCGAGCGCCGCGCGGGCGGCGCTC‑GATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCa > 3:320489/1‑149 (MQ=255) gCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCCTGTGAG‑‑ATCGAGCGCCGCGCGGGCGGCGCTC‑GATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCa > 5:351256/1‑149 (MQ=255) gCCAAGGGCTGATCGGGTTTGTTCCTAAGGGGTATGCCGTTAGGTTTTCAGCGCCTGTGAG‑‑ATCGAGCGCCGCGCGGGCGGCGCTC‑GATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCa > 1:88670/1‑149 (MQ=38) gCCAAGGGCTGATCGGGTTGGGTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCCTGT‑‑GACATCGAGCGCCGCGCGGGCGGCGCTC‑GATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCTGCCCTGACGCGTTCCCCTTc < 7:328057/147‑1 (MQ=38) aGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCCTGTGAG‑‑ATCGAGCGCCGCGCGGGCGGCGCTC‑GATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGcc < 2:335529/149‑1 (MQ=255) gggCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCCTGTGAG‑‑ATCGAGCGCCGCGCGGGCGGCGCTC‑GATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGccc > 6:80437/1‑149 (MQ=255) ggCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTTGGCGCCTGTGAG‑‑ATCGAGCGCCGCGCGGGCGGCGCTC‑GATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGccc > 4:15254/1‑148 (MQ=255) tggtCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCCTGTGAG‑‑ATAGAGCGCCGCGCGGGCGGCGCTC‑GATCTAACAGGCGATGAAAGCCAAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCATCCATTccccac > 2:131335/4‑146 (MQ=37) aTCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCCTGTGAG‑‑ATCGAGCGCCGCGCGGGCGGCGCTC‑GATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGCCCCTCAAt < 4:267728/149‑1 (MQ=255) gggTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCCTGTGAG‑‑ATCGAGCGCCGCGCGGGCGGCGCTC‑GATGTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTGCCCGTGCATGCCCCTACAtgct > 6:200988/1‑149 (MQ=37) ttCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCCTGTGAG‑‑ATCGAGCGCCGCGCGGGCGGCGCTC‑GATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGCCGCGGTCCCCTTCCATGCGCCGCAAAGCTGCCTCCg > 6:8353/1‑149 (MQ=37) gTAAGGGGTATGCCGTTAGGTTTTCGGCGCCTGTGAG‑‑ATCGAGCGCCGCGCGGGCGGCGCTC‑GATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGCCCCTCAATGCTGCCTCCGcc < 5:325246/148‑1 (MQ=255) tAAGGGGTATGCCGTTAGGTTTTCGGCGCCTGTGAG‑‑ATCGAGCGCCGCGCGGGCGGCGCTC‑GATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGCCCCTCAATGCTGCCTCCGCCaa < 5:297477/149‑1 (MQ=255) aGGGGTATGCCGTTAGGTTTTCGGCGCCTGTGAG‑‑ATCGAGCGCCGCGCGGGCGGCGCTC‑GATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGCCCCTCAATGCTGCCTCCGCCAAgc < 5:80437/149‑1 (MQ=255) gCCGTTAGGTTTTCGGCGCCTGTGAG‑‑ATCGAGCGCCGCGCGGGCGGCGCTC‑GATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGCCCCTCAATGCTGCCTCCGCCAAGCACGCACAg > 7:271587/1‑149 (MQ=255) cGTTAGGTTTTCGGCGCCTGTGAG‑‑ATCGAGCGCCGCGCGGGCGGCGCTC‑GATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGCCCCTCAATGCTGCCTCCGCCAAGCACGCACAgtg < 6:351256/149‑1 (MQ=255) cGTTAGGTTTTCGGCGCCTGTGAG‑‑ATCGAGCGCCGCGCGGGCGGCGCTC‑GATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGCCCCTCAATGCTGCCTCCGCCAAGCACGCACAgtg > 4:232756/1‑149 (MQ=255) gTTAGGTTTTCGGCGCCTGTGAG‑‑ATCGAGCGCCGCGCGGGCGGCGCTC‑GATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGCCCCTCAATGCTGCCTCCGCCAAGCACGCACAgtgg > 1:132248/1‑149 (MQ=255) aGGTTTTCGGCGCCTGTGAG‑‑ATCGAGCGCCGCGCGGGCGGCGCTC‑GATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGCCCCTCAATGCTGCCTCCGCCAAGCACGCACAgtggtg < 1:313074/148‑1 (MQ=255) gTTTTTGGCGCCTGTGAG‑‑ATCGAGCGCCGCGCGGGCGGCGCTC‑GATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGCCCCTCAATGCTGCCTCCGCCAAGCACGCACAGTGGTGTAc < 3:15254/149‑1 (MQ=255) gTTTTCGGCGCCTGTGAG‑‑ATCGAGCGCCGCGCGGGCGGCGCTC‑GATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGCCCCTCAATGCTGCCTCCGCCCAGCCCGCACAGTGGGGTa > 4:241865/1‑148 (MQ=38) tttCGGCGCCTGTGAG‑‑ATCGAGCGCCGCGCGGGCGGCGCTC‑GATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGCCCCTCAATGCTGCCTCCGCCAAGCACGCACAGTGGTGTACAg > 8:332948/1‑149 (MQ=255) || CCTGACGCCGCCGATTCGCATCTCGGTAATGCTGATCCCGGCATGGATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCCTGT‑‑G‑‑ATCGAGCGCCGCGCGGGCGGCGCTC‑GATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGCCCCTCAATGCTGCCTCCGCCAAGCACGCACAGTGGTGTACAG > NC_002947/1070098‑1070380 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |