New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1419549	32 (0.500)	16 (0.260) +CT	13/274	5.1	30.8%	intergenic (‑38/+98)	PP_1242/PP_1244	hypothetical protein/hypothetical protein
	?	NC_002947	= 1780139	41 (0.650)					intergenic (+98/+8)	PP_1587/dapC	NhaP‑type Na+(K+)/H+ antiporter/N‑succinyl‑L,L‑diaminopimelate aminotransferase
Rejected: Coverage evenness skew score above cutoff.

GGTGAGCTGGATATGAGTGAGGCGAACCTGGGTTCAGTCAAGTAGACCCTATCAAGGCCC‑TTCGCGGGCGCGCCCGCTCCCACAGGTACTGCGCTGCGCTTGAAATCAGCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGGTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGGCCAGCGGTGCAACCAGTGCCATGCGCACGCGCCCGGCACCCGGGTTCACCCCATCCACTTCACGCGACAGGTACGACCCCGG  >  NC_002947/1779997‑1780281                                                                                                                                                |                                                                                                                                               ggTGAGCTGGATATGAGTGAGGCGAACCTGGGTTCAGTCAAGTAGACCCTATCAAGGCCC‑TTCGCGGGCGCGCCCGCTCCCACAGGTAATGCGCTGCGCGTGAAATCAGCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGGtt                                                                                                                                           >  3:272896/1‑148 (MQ=255)          gATATGAGTGAGGCGAACCTGGGTTCAGTCAAGTAGACCCTATCAAGGCCC‑TTCGCGGGCGCGCCCGCTCCCACAGGTACTGCGCTTCGGTTGATATCAGCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGGTTGATCAGCggg                                                                                                                                 >  3:267249/1‑148 (MQ=255)               gagtgagGCGAACCTGGGTTCAGTCAAGTAGACCCTATCAAGGCCC‑TTCGCGGGCGCGCCCGCTACCCCAGGTAAATCCCTGCGGGAGCAATAAGCCCAGTACCAGAGGCAGCGGGCGTGCCAGCGAACGGGTTGATCAGCGGTTTTg                                                                                                                             >  2:86750/1‑148 (MQ=255)                 gtgagGCGAACCTGGGTTCAGTCAAGTAGACCCTATCAAGGCCC‑TTCGCGGGCGCGCCCGCTCCCACAGGTACTGCGCTGCGCTTGAAATCAGCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGGTTGATCAGCGGTTTTGCAg                                                                                                                          >  3:227115/1‑149 (MQ=255)                      gCGAACCTGGGTTCAGTCAAGTAGACCCTATCAAGGCCC‑TTCGCGGGCGCGCCCGCTCCCACAGGTACTGCGCTGCGCTTGAAATCAGCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGGTTGATCAGc                                                                                                                                    >  7:77345/1‑134 (MQ=255)                      gCGAACCTGGGTTCAGTCAAGTAGACCCTATCAAGGCCC‑TTCGAGGGCGCGCCCGCTAACAAAGTGACACCGATGCCCTTGAAATACACCCTGTACCTGAAGCATCGGGCGATCACGCGAAGTGGTTGATCAGCGGTTTTGCAGGaacg                                                                                                                     >  8:251647/1‑147 (MQ=255)                                           tAGACCCTATCAAGGCCC‑TTCGCGGGCGCGCCCGCGCCCACCGGGACGGGGCTGGGCGTGAAAAGGGCGGGGTACCGGGGGGAGCGGGGGTGGCCGCGCAGGGGTTGGAAAGCGGGGTTGGGGGAACGCGCGAAAGCGCTCCGCCGCtt                                                                                                >  8:99434/1‑149 (MQ=255)                                                ccctacAAGGCCCTTTCGCGTGCGGGCCCGCCCCCACGGGTAGCGGGGTGCTGTTAATTTCAGCGTTTTACGGGGGTTCGCGGGCGTGCCCGCGAAGGGGTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGa                                                                                             <  4:267249/143‑1 (MQ=255)                                                                ccatctcgcgcCCGCTCCCACAGGGACTGCGCTGCGCTGGACCTCCGCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGGTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGGCCAGCGGt                                                                            <  8:323375/143‑1 (MQ=38)                                                                       gcgcCCGCTCCCACAGGTACTGCGCTGCGCTTGAAATCAGCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGGTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGGCCAGCGGt                                                                            >  7:323375/1‑142 (MQ=255)                                                                           ccGCTCCCACAGGTACTGCGCTGCGCTTGAAATCAGCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGGTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGGCCAGCGGTGCAACCAGTGc                                                                 >  3:113117/1‑149 (MQ=255)                                                                              cTCCCACAGGTACTGCGCTGCGCTTGAAATCAGCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGGTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGGCCAGCGGTGCAACCAGTGCCAt                                                              <  4:113117/149‑1 (MQ=255)                                                                               tCCCACAGGTACTGCGCTGCGCTTGAAATCAGCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGGTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGGCCAGCGGTGCAACCAGTGCCATg                                                             >  6:202792/1‑149 (MQ=255)                                                                                 ccACAGGTACTGCGCTGCGCTTGAAATCAGCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGGTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGGCCAGCGGTGCAACCAGTGCCATgcg                                                           >  5:1684/1‑149 (MQ=255)                                                                                        tcctgcgctgcgCTTCAAACCAGCGGTGTACGTGGGGGAGCGGGCGGGCCCGCGAAGGGGTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGGCCAGCGGTGCAACCAGTGCCATGCGCACgcgc                                                    <  7:99434/147‑1 (MQ=255)                                                                                        tACTGCGCTGCGCTTGAAATCAGCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGGTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGGCCAGCGGTGCAACCAGTGCCATGCGCACgagc                                                    >  3:210862/1‑149 (MQ=255)                                                                                        tACTGCGCTGCGCTTGAAATCAGCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGGTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGGCCAGCGGTGCAACCAGTGCCATCCGCACgcgc                                                    >  3:215618/1‑149 (MQ=255)                                                                                                tgcgctTGAAATCAGCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGGTTGATCAGAGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGGCCAGCGGTGCAACCAGTGCCATGCGCACGCGCCCGGCAcc                                            >  5:260133/1‑149 (MQ=255)                                                                                                        aaaTCAGCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGGTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGGCCAGCGGTGCAACCAGTGCCATGCGCACGCGCCCGGCACCCGGGTTc                                     <  5:202792/148‑1 (MQ=255)                                                                                                           tCAGCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGGTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGGCCAGCGGTGCAACCAGTGcc                                                                <  5:151907/118‑1 (MQ=255)                                                                                                           tCAGCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGGTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGGCCAGCGGTGCAACCAGTGcc                                                                >  6:151907/1‑118 (MQ=255)                                                                                                             aGCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGGTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGGCCAGCGGt                                                                            >  8:338675/1‑104 (MQ=255)                                                                                                             aGCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGGTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGGCCAGCGGt                                                                            <  7:338675/104‑1 (MQ=255)                                                                                                              gcgcTGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGGTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGTCCAGCGGTGCAACCAGTGCCATGCGCACGCGCCCGGCACCCGGGTTCACCCCAt                              >  5:186429/1‑149 (MQ=255)                                                                                                              gcgcTGTACCTGTGGGAGCGGGCGTGCCAGCGAATGGGTTGATAATCGGTTTTGCAGGAAGGCGCGAATGCGCTACGCCGGTTCGATGCATTAGGCCAGCGGTTCAAACAGTTCCATTCGCACGCGCCCGGCACCCGGGTTCACCCCa                               >  1:21914/1‑148 (MQ=255)                                                                                                               cgcTGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGGTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGGCCAGCGGTGCAACCAGTGCCATGCGCACGCGCCCGGCACCCGGGTTCACCCCATc                             <  1:84077/149‑1 (MQ=255)                                                                                                                 cTGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGGTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGGCCAGCGGTGCAACCAGTGCCATGCGCACGCGCCCGGCACCCGGGTTCACCCCATcc                            >  3:281998/1‑148 (MQ=255)                                                                                                                  tGTACCTGTGGTTGCGGGCGTTACCGCGAATGTGTTGATCAGCTGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCTCTTCGATGCTTTCGGCCAGAGGTGCAACCAGTGCCATGCGCACGCGCCCGGCACCCTGTTTCACCCCATCCaa                          <  6:186429/149‑2 (MQ=255)                                                                                                                       cTGTGGGAGCGGGCGTGCCCGCGAAGGGGTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGGCCAGCGGTGCAACCAGTGCCATGCGCACGCGCCCGGCACCCGGGTTCACCCCATCCACTTCAc                     >  3:21326/1‑149 (MQ=255)                                                                                                                         ttgGGAGCGGGCGTGCCCGCGAAGGGGTTGATCCGCGGTTTTGCAGGACGGGGCGAATGCGCTCCGCGGCTTCGATGCTTTCGGCCAGCGGTGGAACCAGTGCGATGCGCACGCGCCCGGCACCCGGGTTCACCCCATCCACTTCAcgc                   <  4:215618/148‑1 (MQ=255)                                                                                                                         gtgGGAGCGGGCGGGCCCGCGAAGGGTTTGATCAGGGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGGCCAGCGGTGCAACCAGTGCCATGCGCACGCGCCCGGCACCCGGGTTCACCCCATCCACTTCAcgc                   <  4:210862/149‑1 (MQ=255)                                                                                                                           cttcgCGGGCGTGCCCGCGAAGGGGTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGGCCAGCGGTGCAACCAGTGCCATgc                                                            <  7:42517/102‑1 (MQ=255)                                                                                                                           cttcgCGGGCGTGCCCGCGAAGGGGTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGGCCAGCGGTGCAACCAGTGCCATgc                                                            >  8:42517/5‑106 (MQ=255)                                                                                                                            ggAGCGGGCGTGCCCGCGAAGGGGTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGGCCAGCGGTGCAACCAGTGCCATGCGCACGCGCCCGGCACCCGGGTTCACCCCATCCACTTCACGCGa                 >  1:2433/1‑148 (MQ=255)                                                                                                                                  ggCGCGCCCGCGAAGGGGTTGATCAGCGGTTTTGCAGGAAGGCTCGAATGCGCTCCGCCGCTTCGATGCATTCGGCCAGCGGTGCAACCAGTGCCATGCGCACGCGCCCGGCACCCGGGTTCACCCCATCCACTTCAAGCGACAGGTAc          >  4:19022/1‑149 (MQ=255)                                                                                                                                        cgcgcgAAGGGTTTGATCAGCTGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGGCCAGCGGTGCAACCAGTGCCATGCGCACGCGCCCGGCACCCGGGTTCACCCCATCCACTTCACGCGACAGGTACGAccc     <  6:260133/146‑1 (MQ=255)                                                                                                                                         ccGCGAAGGGGTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGGCCAGCGGTGCAACCAGTGCCATGCGCACGCGCCCGGCACCCGGGTTCACCCCATCCACTTCACGCGACAGGTACGACCCCg   >  5:330190/1‑149 (MQ=255)                                                                                                                                         ccGCGAAGGGGTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGGCCAGCGGTGCAACCAGTGCCATGCGCACGCGCCCGGCACCCGGGTTCACCCCATCCACTTCACGCGACAGGTACGACCCCg   <  4:281998/149‑1 (MQ=255)                                                                                                                                          cgcgAAGGGGTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGGCCAGCGGTGCAACCAGTGCCATGCGCACGCGCCCGGCACCCGGGTTCACCCCATCCACTTCACGCGACAGGt            >  2:151125/1‑139 (MQ=255)                                                                                                                                          cgcgAAGGGGTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGGCCAGCGGTGCAACCAGTGCCATGCGCACGCGCCCGGCACCCGGGTTCACCCCATCCACTTCACGCGACAGGt            <  1:151125/139‑1 (MQ=255)                                                                                                                                          cgcgAAGGGGTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGGCCAGCGGTGCAACCAGTGCCATGCGCACGCGCCCGGCACCCGGGTTCACCCCATCCACTTCACGCGACAGGTACGACCCCgg  <  6:1684/149‑1 (MQ=255)                                                                                                                                                |                                                                                                                                               GGTGAGCTGGATATGAGTGAGGCGAACCTGGGTTCAGTCAAGTAGACCCTATCAAGGCCC‑TTCGCGGGCGCGCCCGCTCCCACAGGTACTGCGCTGCGCTTGAAATCAGCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGGTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGGCCAGCGGTGCAACCAGTGCCATGCGCACGCGCCCGGCACCCGGGTTCACCCCATCCACTTCACGCGACAGGTACGACCCCGG  >  NC_002947/1779997‑1780281

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.