Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_002947195,6340CT55.6% ‑1.1 / 130.4 108T380T (ACC→ACT) PP_0168putative surface adhesion protein
Reads supporting (aligned to +/- strand):  ref base C (25/23);  new base T (32/28);  total (57/51)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
Rejected as consensus: E-value score below prediction cutoff.
Rejected as consensus: Frequency below/above cutoff threshold.

Only 100 of 126 total aligned reads displayed.

AGACCCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCG‑ACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAGGG  >  NC_002947/195495‑195780
                                                                                                                                            |                                                                                                                                                  
aGACCCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCG‑ACACCACCACCGCGAc                                                                                                                                            >  3:227386/1‑148 (MQ=39)
          cAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACACCGAATCCGACCCCTGCTCAGACCACGATCAACGACTCGGTCT‑AAACCACCACCGCGAACCTGACGGc                                                                                                                                   >  4:445/1‑147 (MQ=11)
           aaTGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCG‑ACACCACTACCGCGACCCTGACGGCGAg                                                                                                                                <  7:43358/149‑1 (MQ=17)
            aTGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCG‑ACACCACCACCGCGACCCTGACGGCGAGc                                                                                                                               <  2:321508/149‑1 (MQ=37)
            aTGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCG‑ACACCACTACCGCGACCCTGACGGCGAGc                                                                                                                               >  6:96861/1‑149 (MQ=17)
              gACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCG‑ACACCACCACCGCGACCCTGACGGCGAGccc                                                                                                                             >  2:197003/1‑149 (MQ=37)
                cGTCTACAACATCGTTTGGTCCGTCAGCTTCACCATCGAGAAAGCCACCGGCGGTAATTTCGTGCAACTGACCCCGAATCCGAGCCCGGCTCAGACCACTATCAACGACTCGGTCG‑ACACCACCACCGCGACCCTGACGGCGAGCCCg                                                                                                                            <  8:312088/148‑1 (MQ=11)
                cGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCG‑ACACCACTACCGCGACCCTGACGGCGAGCCCGt                                                                                                                           <  2:112028/149‑1 (MQ=17)
                    tACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACATGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCG‑ACACCACTACCGCGAcc                                                                                                                                           <  2:351989/129‑1 (MQ=12)
                    tACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGAGCTAATTTCGAGAAACTGACCCCGAATCCGACACCGGCTCAGACCACGATCAACGACTCGGTCG‑ACACAACTACCGCCAcc                                                                                                                                           >  1:351989/1‑129 (MQ=11)
                     acaacaACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCCCGATCAACGACTCGGTCG‑ACACCACTACCGCGACCCTGACCGCGAGCCCGTCGGt                                                                                                                       >  3:80498/1‑148 (MQ=255)
                       aacaacGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCG‑ACACCACTACCGCGACCCTGAc                                                                                                                                      >  1:146421/1‑131 (MQ=17)
                         caacGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCG‑ACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCa                                                                                                                     <  7:155462/146‑1 (MQ=17)
                           acGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCG‑ACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGaa                                                                                                                <  3:8797/149‑1 (MQ=37)
                               ttCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCG‑ACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAggcg                                                                                                            >  8:307350/1‑149 (MQ=17)
                                   aCCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCG‑ACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGt                                                                                                        <  7:307350/149‑1 (MQ=17)
                                     cGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCG‑ACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGa                                                                                                      >  8:212276/1‑149 (MQ=17)
                                       tCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCG‑ACACCACTACCGCGACCCTGACGGCGAGc                                                                                                                               <  2:244647/122‑1 (MQ=17)
                                       tCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCG‑ACACCACTACCGCGACCCTGACGGCGAGc                                                                                                                               >  1:244647/1‑122 (MQ=17)
                                         aGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCG‑ACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCAc                                                                                                  <  5:96861/149‑1 (MQ=17)
                                           cGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCG‑ACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACt                                                                                                 >  1:42475/1‑148 (MQ=17)
                                            gTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCG‑ACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTa                                                                                               <  3:285422/149‑1 (MQ=39)
                                             tCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCG‑ACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTa                                                                                               >  8:114843/1‑148 (MQ=39)
                                                ccATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCG‑ACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACAcc                                                                                           >  8:30417/1‑149 (MQ=17)
                                                 cATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCG‑ACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCg                                                                                          >  3:132789/1‑149 (MQ=17)
                                                  aTCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGCCCCCGGCTCAGACCACGATCAACGACTCGGTCG‑ACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGt                                                                                         >  6:347004/1‑149 (MQ=12)
                                                     gagaACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCG‑ACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGa                                                                                       <  7:210023/148‑1 (MQ=17)
                                                      agaACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCG‑ACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGAc                                                                                      >  3:368825/1‑148 (MQ=39)
                                                      agaACGCCACAGGCGGTAATTTCGAGCAAATGACCCCGAATCAGACCCCGCCTCAGACAACGATCAACGACTCGGTCG‑ACACCACTACCCCGACCCTAACGGAGAGCCCGTCGGTCACAGAACGAGGCGTGATCACTTACAACGTGAcc                                                                                     >  4:214653/1‑149 (MQ=11)
                                                          cGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCG‑ACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGt                                                                                                        >  5:51141/1‑126 (MQ=17)
                                                          cGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCG‑ACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGt                                                                                                        <  6:51141/126‑1 (MQ=17)
                                                          cGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCG‑ACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGa                                                                                 <  2:42475/149‑1 (MQ=17)
                                                           gCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCG‑ACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAg                                                                                >  3:341908/1‑149 (MQ=39)
                                                             cacaGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCG‑ACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAggcg                                                                                                            <  5:365883/119‑1 (MQ=12)
                                                             cacaGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCG‑ACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACCCCGTGACCCTGAGc                                                                               >  7:341106/1‑148 (MQ=12)
                                                             cACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTGGGACCACGATCAACGACTCGGTCG‑ACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGc                                                                               >  1:83480/1‑148 (MQ=255)
                                                             cACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCGGACCACGATCAACGACTCGGTCG‑ACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGc                                                                               <  2:83480/148‑1 (MQ=255)
                                                                  gcggTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCG‑ATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCt                                                                         <  8:245660/149‑1 (MQ=17)
                                                                     gTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCT‑CCACCACTACCGCGACCCTGACGGCGAGCCCTTCGGTCACCGCAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGcc                                                                      >  4:212076/1‑149 (MQ=11)
                                                                        aTTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCG‑ACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCa                                                                    <  4:366323/148‑1 (MQ=21)
                                                                          ttCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCG‑ATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGAc                                                                 >  1:154052/1‑149 (MQ=17)
                                                                             gAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCG‑ACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGc                                                               <  3:305140/148‑1 (MQ=21)
                                                                             gAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCG‑ACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGc                                                               <  4:341908/148‑1 (MQ=39)
                                                                              aGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCG‑ACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCg                                                             <  4:132789/149‑1 (MQ=21)
                                                                              aGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCG‑ACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACGCTGAGCAACCCTGCCCAGACGCCg                                                             <  2:54239/149‑1 (MQ=255)
                                                                                 aaCTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCG‑ATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGtg                                                          <  4:102523/149‑2 (MQ=14)
                                                                                   cTGACCCCGAATCCGACCCCGGCTCAGACCACGCTCAACGACTCGGTCG‑ACACCACCACCGCGACCCTGACGGCGCGCCCGGCGGTCACCGCAGGCGGGGTGATCACGTACACCCTGACCCTGAGCAGCCCTGCCCAGACGCCGGTAAc                                                        >  4:37737/1‑149 (MQ=11)
                                                                                   cTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCG‑ACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAAc                                                        >  1:101012/1‑149 (MQ=37)
                                                                                   cTGACCCCGAATCCGACCCCGGCCCAGACCACGATCAACGACTCGGTCG‑ATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCa                                                                    >  7:35192/1‑137 (MQ=12)
                                                                                   cTGACCCCGAATCCGACCCCGGCCCAGACCACGATCAACGACTCGGTCG‑ATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCa                                                                    <  8:35192/137‑1 (MQ=12)
                                                                                      aCCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCG‑ACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGt                                                     >  6:255723/1‑149 (MQ=255)
                                                                                       ccccGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCG‑ACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCAc                                                                                                                    >  8:62817/1‑85 (MQ=18)
                                                                                       ccccGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCG‑ACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCAc                                                                                                                    <  7:62817/85‑1 (MQ=18)
                                                                                         ccGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCG‑ACACCACTACCGCGACCCTGACGGCGAGc                                                                                                                               >  4:242205/1‑72 (MQ=21)
                                                                                          ctaaTCCGACCCCGGCTCAGACCACTATCAACGACTCGGTCG‑ACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAAc                                                 <  4:80498/147‑1 (MQ=255)
                                                                                          cGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGAACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGa                                                                                 >  1:261094/1‑118 (MQ=255)
                                                                                          cGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCG‑ACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGa                                                                                 <  2:261094/117‑1 (MQ=17)
                                                                                           gAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCG‑ACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGt                                                                                         <  7:71075/108‑1 (MQ=17)
                                                                                           gAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCG‑ACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAggcg                                                                                                            >  5:175667/1‑89 (MQ=38)
                                                                                                cGACCCCGGCTCAGACCACGATCAACGACTCGGTCG‑ACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTc                                            <  7:30417/148‑1 (MQ=255)
                                                                                                 gACCCCGGCTCAGACCACGATCAACGACTCGGTCG‑ACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGaa                                                  <  8:60825/141‑1 (MQ=40)
                                                                                                  aCCCCGGCTCAGACCACGATCAACGACTGGGTCG‑ACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCaa                                         >  1:209452/1‑149 (MQ=255)
                                                                                                   ccccGGCTCAGACCACGATCAACGACTCGGTCG‑ACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAAc                                        >  8:138337/1‑149 (MQ=38)
                                                                                                    cccGGCTCAGACCACGATCAACGACTCGGTCG‑ACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACg                                       >  2:356767/1‑149 (MQ=38)
                                                                                                    cccGGCTCAGACCACGATCAACGACTCGGTCG‑ACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGa                                                                                 <  4:339069/107‑1 (MQ=33)
                                                                                                     ccGGCTCAGACCACGATCAACGACTCGGTCG‑ACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACgg                                      >  6:161681/1‑149 (MQ=39)
                                                                                                      cGGCTCAGACCACGATCAACGACTCGGTCG‑ACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGc                                     <  7:114843/149‑1 (MQ=39)
                                                                                                            aGACCACGATCAACGACTCGGTCG‑ACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAAc                                                 >  2:30510/1‑131 (MQ=37)
                                                                                                            aGACCACGATCAACGACTCGGTCG‑ACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAAc                                                 <  1:30510/131‑1 (MQ=37)
                                                                                                            aGACCACGATCAACGACTCGGTCG‑ACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAAc                                >  6:312620/1‑148 (MQ=37)
                                                                                                            aGACCACGATCAACGACTCGGTCG‑ACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAAc                                <  2:101012/148‑1 (MQ=37)
                                                                                                                cACGATCAACGACTCGGTCG‑ACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGCCGTGATCACTTACACCTTGACCCTGAGCAAACCTGCCCAGACGCCTGTAACCGAGAACCTGTCCAACGGACAAACGaat                            >  8:183030/1‑146 (MQ=11)
                                                                                                                  cGATCAACGACTCGGTCG‑ACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTAcc                         >  8:223483/1‑149 (MQ=39)
                                                                                                                   gATCAACGACTCGGTCG‑ACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCg                        >  4:265972/1‑149 (MQ=255)
                                                                                                                     tCAACGACTCGGTCG‑ACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGtt                      >  1:173300/1‑149 (MQ=255)
                                                                                                                           aCTCGGTCG‑ACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACg                                       >  7:276950/1‑126 (MQ=40)
                                                                                                                            cTCGGTCG‑ACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCgg               <  3:265972/149‑1 (MQ=255)
                                                                                                                            cTCGGTCG‑ACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCgg               >  3:46408/1‑149 (MQ=255)
                                                                                                                            cTCGGTCG‑ACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCgg               <  5:161681/149‑1 (MQ=39)
                                                                                                                            cTCGGTCG‑ACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCgg               >  1:326714/1‑149 (MQ=39)
                                                                                                                            cTCGGTCG‑ACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCgg               <  2:209452/149‑1 (MQ=39)
                                                                                                                               ggTCG‑ACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCggg              <  7:183030/147‑1 (MQ=255)
                                                                                                                               ggTCG‑ACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCGAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCggg              <  2:326714/147‑1 (MQ=255)
                                                                                                                                gTCG‑ACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTa            >  3:311933/1‑148 (MQ=39)
                                                                                                                                  cG‑ACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTaaaa         <  3:37737/149‑1 (MQ=39)
                                                                                                                                       accactaccGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAAcc       >  3:139776/1‑147 (MQ=255)
                                                                                                                                       accaccaccGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAAcc       >  4:5182/1‑147 (MQ=39)
                                                                                                                                       accaccaccGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAAcc       >  5:51528/1‑147 (MQ=39)
                                                                                                                                         cactaccGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTa                           >  8:341161/1‑125 (MQ=255)
                                                                                                                                         cactaccGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTa                           <  7:341161/125‑1 (MQ=255)
                                                                                                                                         cactaccGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCgg               >  4:358125/1‑137 (MQ=255)
                                                                                                                                         cactaccGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCgg               <  3:358125/137‑1 (MQ=255)
                                                                                                                                         cactaccGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAgg   >  7:107602/1‑149 (MQ=255)
                                                                                                                                         caccaccGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCaa                                         >  4:220423/1‑111 (MQ=12)
                                                                                                                                         caccaccGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCaa                                         <  3:220423/111‑1 (MQ=12)
                                                                                                                                         caccaccGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAg    >  1:373095/1‑148 (MQ=39)
                                                                                                                                          accaccGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGTCGGCGAGATACCATACACCGTGACCCTGAGCAACCCTTCCCAGACGCCGGTAAACTAGAACCTATACAAAGTCCAAACGAATACATTTTAAGCAGGTaaaaaaaagg   >  4:278204/1‑142 (MQ=2)
                                                                                                                                          accaccGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGt                                                     >  6:358522/1‑98 (MQ=40)
                                                                                                                                          accaccGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGt                                                     <  5:358522/98‑1 (MQ=40)
                                                                                                                                            caccGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAggg  >  7:219254/1‑147 (MQ=39)
                                                                                                                                            |                                                                                                                                                  
AGACCCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCG‑ACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAGGG  >  NC_002947/195495‑195780

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑