| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 4,740,805 | Δ1 bp | 100% | intergenic (+42/+711) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 4,740,805 | 0 | T | . | 92.5% | 200.8 / 9.1 | 53 | intergenic (+42/+711) | gltA/yeiW | citrate synthase/putative oxidoreductase |
| Reads supporting (aligned to +/- strand): ref base T (1/3); new base . (25/24); total (26/27) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.10e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| Rejected as polymorphism: Variant not supported by required number of reads on each strand. | |||||||||||
| Rejected as polymorphism: Polymorphic indel expands or contracts a homopolymer stretch. | |||||||||||
CGCACTGGAAAGAAATGCTCTCCAGCCCGTACAAGATCGGCCGTCCGCGCCAGCTGTACACCGGCGAGCAGAAGCGCGACATCGTTGCCCTGAAAGACCGCAAGTAAGCTGCAGTAGCCGAACGCAAG‑AAGGCTGCCCTCGGGCAGCCTTTTTTTATTTTTCTGGTGCCGGCCTCTTCGCGGCCTTGCC‑‑CGCGAAGAGGCCGGCACAGACACCACAAAACCTCAGTTTTTCTCCGCCCGCTCACGCAGCCCTTTCAGGGTATTGAACGGCGCATCCACCACGAACTTGTTG > NC_002947/4740657‑4740947 | cGCACTGGAAAGAAATGCTCTCCAGCCCGTACAAGATCGGCCGTCCGCGCCAGCTGTACACCGGCGAGCAGAAGCGCGACATCGTTGCCCTGAAAGACCGCAAGTAAGCTGCAGTAGCCGAACGCAAG‑AAGGCTGCCCTCGGGCAGCCt > 1:69553/1‑149 (MQ=255) aCTGGAAAGAAATGCTCTCCAGCCCGTACAAGATCGGCCGTCCGCGCCAGCTGTACACCGGCGAGCAGAAGCGCGACATCGTTGCCCTGAAAGACCGCAAGTAAGCTGCAGTAGCCGAACGCAAG‑AAGGCTGCCCTCGGGCAGCCtttt < 5:215451/149‑1 (MQ=255) tGGAAAGAAATGCTCTCCAGCCCGTACAAGATCGGCCGTCCGCGCCAGCTGTACACCGGCGAGCAGAAGCGCGACATCGTTGCCCTGAAAGACCGCAAGTAAGCTGCAGTAGCCGAACGCAAG‑AAGGCTGCCCTCGGGCAGCCttttt > 6:314787/1‑148 (MQ=255) gaaagaaaTGCTCTCCAGCCCGTACAAGATCGGCCGTCCGCGCCAGCTGTACACCGGCGAGCAGAAGCGCGACATCGTTGCCCTGAAAGACCGCAAGTAAGCTGCAGTAGCCGAACGCAAG‑AAGGCTGCCCTCGGGCAGCCttttttat > 4:83793/1‑147 (MQ=255) gaaagaaaTGCTCTCCAGCCCGTACAAGATCGGCCGTCCGCGCCAGCTGTACACCGGCGAGCAGAAGCGCGACATCGTTGCCCTGAAAGACCGCAAGTAAGCTGCAGTAGCCGAACGCAAG‑AAGGCTGCCCTCGGGCAGCCtttt > 8:367859/1‑145 (MQ=255) gaaagaaaTGCTCTCCAGCCCGTACAAGATCGGCCGTCCGCGCCAGCTGTACACCGGCGAGCAGAAGCGCGACATCGTTGCCCTGAAAGACCGCAAGTAAGCTGCAGTAGCCGAACGCAAG‑AAGGCTGCCCTCGGGCAGCCtttt < 7:367859/145‑1 (MQ=255) gaaagaaaTGCTCTCCAGCCCGTACAAGATCGGCCGTCCGCGCCAGCTGTACACCGGCGAGCAGAAGCGCGACATCGTTGCCCTGAAAGACCGCAAGTAAGCTGCAGTAGCCGAACGCAAG‑AAGGCTGCCCTCGGGCAGCCtttt > 4:307203/1‑145 (MQ=255) gaaagaaaTGCTCTCCAGCCCGTACAAGATCGGCCGTCCGCGCCAGCTGTACACCGGCGAGCAGAAGCGCGACATCGTTGCCCTGAAAGACCGCAAGTAAGCTGCAGTAGCCGAACGCAAG‑AAGGCTGCCCTCGGGCAGCCtttt < 3:307203/145‑1 (MQ=255) tGCTCTCCAGCCCGTACAAGATCGGCCGTCCGCGCCAGCTGTACACCGGCGAGCAGAAGCGCGACATCGTTGCCCTGAAAGACCGCAAGTAAGCTGCAGTAGCCGAACGCAAG‑AAGGCTGCCCTCGGGCAGCCttttttatt < 5:394622/142‑4 (MQ=255) tGCTCTCCAGCCCGTACAAGATCGGCCGTCCGCGCCAGCTGTACACCGGCGAGCAGAAGCGCGACATCGTTGCCCTGAAAGACCGCAAGTAAGCTGCAGTAGCCGAACGCAAG‑AAGGCTGCCCTCGGGCAGCCttttttatt > 6:394622/1‑139 (MQ=255) ctcCAGCCCGTACAAGATCGGCCGTCCGCGCCAGCTGTACACCGGCGAGCAGAAGCGCGACATCGTTGCCCTGAAAGACCGCAAGTAAGCTGCAGTAGCCGAACGCAAG‑AAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGcc > 1:351734/1‑149 (MQ=255) ccAGCCCGTACAAGATCGGCCGTCCGCGCCAGCTGTACACCGGCGTGCAGAAGCGCGACATCGTTGCCCTGAAAGACCGCAAGTAAGCTGCAGTAGCCGAACGCAAG‑AAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCgg > 1:292235/1‑149 (MQ=255) gCCCGTACAAGATCGGCCGTCCGCGCCAGCTGTACACCGGCGAGCAGAAGCGCGACATCGTTGCCCTGAAAGACCGCAAGTAAGCTGCAGTAGCCGAACGCAAG‑AAGGCTGCCCTCGGGCAGCCttttt > 6:106237/1‑129 (MQ=255) gCCCGTACAAGATCGGCCGTCCGCGCCAGCTGTACACCGGCGAGCAGAAGCGCGACATCGTTGCCCTGAAAGACCGCAAGTAAGCTGCAGTAGCCGAACGCAAG‑AAGGCTGCCCTCGGGCAGCCttttt < 5:106237/129‑1 (MQ=255) ccGTACAAGATCGGCCGTCCGCGCCAGCTGTACACCGGCGAGCAGAAGCGCGACATCGTTGCCCTGAAAGACCGCAAGTAAGCTGCAGTAGCCGAACGCAAG‑AAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCctct < 2:375813/149‑1 (MQ=255) aCAAGATCGGCCGTCCGCGCCAGCTGTACACCGGCGAGCAGAAGCGCGACATCGTTGCCCTGAAAGACCGCAAGTAAGCTGCAGTAGCCGAACGCAAG‑AAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCTCTTcgc > 1:63652/1‑149 (MQ=255) aTCGGCCGTCCGCGCCAGCTGTACACCGGCGAGCAGAAGCGCGACATCGTTGCCCTGAAAGACCGCAAGTAAGCTGCAGTAGCCGAACGCAAG‑AAGGCTGCCCTCGGGCAGCCttttttat > 6:318793/1‑119 (MQ=255) aTCGGCCGTCCGCGCCAGCTGTACACCGGCGAGCAGAAGCGCGACATCGTTGCCCTGAAAGACCGCAAGTAAGCTGCAGTAGCCGAACGCAAG‑AAGGCTGCCCTCGGGCAGCCttttttat < 5:318793/121‑3 (MQ=255) ggCCGTCCGCGCCAGCTGTACACCGGCGAGCAGAAGCGCGACATCGTTGCCCTGAAAGACCGCAAGTAAGCTGCAGTAGCCGAACGCAAG‑AAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCTCTTCGCGGCCTTGc > 5:344767/1‑149 (MQ=255) ggCCGTCCGCGCCAGCTGTACACCGGCGAGCAGAAGCGCGACATCGTTGCCCTGAAAGACCGCAAGTAAGCTGCAGTAGCCGAACGCAAG‑AAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCTCTTAGCGGCCTTGc > 5:4907/1‑149 (MQ=255) gCCGTCCGCGCCAGCTGTACACCGGCGAGCAGAAGCGCGACATCGTTGCCCTGAAAGACCGCAAGTAAGCTGCAGTAGCCGAACGCAAG‑AAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCTCTTCGCGGCCTTGcc > 8:348315/1‑149 (MQ=255) cgcgCCAGCTGTACACCGGCGAGCAGAAGCGCGACATCGTTGCCCTGAAAGACCGCAAGTAAGCTGCAGTAGCCGAACGCAAG‑AAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCTCTTCGCGGGCAAGGC‑‑CGCGaa < 5:314787/149‑1 (MQ=255) gcgcCAGCTGTACACCGGCGAGCAGAAGCGCGACATCGTTGCCCTGAAAGACCGCAAGTAAGCTGCAGTAGCCGAACGCAAGAAACGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCTCTTCGCGGCCTTGCC‑‑CGCGaa < 1:328402/149‑1 (MQ=255) gcgcCAGCTGTACACCGGCGAGCAGAAGCGCGACATCGTTGCCCTGAAAGACCGCAAGTAAGCTGCAGTAGCCGAACGCAAG‑AAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCTCTTCGCGGCCTTGCC‑‑CGCGAag < 2:292235/149‑1 (MQ=255) cgcCAGCTGTACACCGGCGAGCAGAAGCGCGACATCGTTGCCCTGAAAGACCGCAAGTAAGCTGCAGTAGCCGAACGCAAG‑AAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCTCTTCGCGGCCTTGCC‑‑CGCGAaga < 3:83793/149‑1 (MQ=255) cgcCAGCTGTACACCGGCGAGCAGAAGCGCGACATCGTTGCCCTGAAAGACCGCAAGTAAGCTGCACTAGCCGAACGCAAG‑AAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCTCTTCGCGGCCTTGCC‑‑CGCGAaga < 5:13022/149‑1 (MQ=255) gcCAGCTGTACACCGGCGAGCAGAAGCGCGACATCGTTGCCCTGAAAGACCGCAAGTAAGCTGCAGTAGCCGAACGCAAG‑AAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCTCTTCGCGGGCAAGGC‑‑CGCGAagag < 5:58332/149‑1 (MQ=38) gcCAGCTGTACACCGGCGAGCAGAAGCGCGACATCGTTGCCCTGAAAGACCGCAAGTAAGCTGCAGTAGCCGAACGCAAG‑AAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCTCTTCGCGGCCTTGCC‑‑CGCGAagag < 7:108256/149‑1 (MQ=255) gcCAGCTGTACACCGGCGAGCAGAAGCGCGACATCGTTGCCCTGAAAGACCGCAAGTAAGCTGCAGTAGCCGAACGCAAG‑AAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCTCTTCGCGGCCTTGCC‑‑CGCGAagag < 2:69553/149‑1 (MQ=255) aGCTGTACACCGGCGAGCAGAAGCGCGACATCGTTGCCCTGAAAGACCGCAAGTAAGCTGCAGTAGCCGAACGCAAG‑AAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCTCTTCGCGGCCTTGCC‑‑CGCGAAGAGGcc > 4:87251/1‑149 (MQ=255) cacCGGCGAGCAGAAGCGCGACATCGTTGCCCTGAAAGACCGCAAGTAAGCTGCAGTAGCCGAACGCAAG‑AAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCTCTTCGCGGCCTTGCC‑‑CGCGAAGAGGCCGGcaca < 6:344767/148‑1 (MQ=255) acCGGCGAGCAGAAGCGCGACATCGTTGCCCTGAAAGACCGCAAGTAAGCTGCAGTAGCCGAACGCAAG‑AAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCTCTTCGCGGGCAAGGC‑‑CGCGaa < 8:145575/135‑1 (MQ=38) acCGGCGAGCAGAAGCGCGACATCGTTGCCCTGAAAGACCGCAAGTAAGCTGCAGTAGCCGAACGCAAG‑AAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCTCTTCGCGGGCAAGGC‑‑CGCGaa > 7:145575/1‑135 (MQ=38) ccGGCGAGCAGAAGCGCGACATCGTTGCCCTGAAAGACCGCAAGTAAGCTGCAGTAGCCGAACGCAAG‑AAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCTCTTCGCGGGCAAGGC‑‑CGCGAagag < 6:356868/137‑1 (MQ=38) ccGGCGAGCAGAAGCGCGACATCGTTGCCCTGAAAGACCGCAAGTAAGCTGCAGTAGCCGAACGCAAG‑AAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCTCTTCGCGGGCAAGGC‑‑CGCGAagag > 5:356868/1‑137 (MQ=38) aGACGCGCGAAATCGTGGCCGTTAAACCCCCCACTAACGCGGCAGTCCCCCAACCCAAC‑ACGGGTGCCCGCGGGCAG‑CTTTTTTTATTTGGCCTGGGCCGGCCTCTTCGCGGCCTTGCC‑‑CGCGAAGAGGCCGGCACAGACACCACaaaa < 2:351734/149‑1 (MQ=255) aGAAGCGCGACATCGTTGCCCTGAAAGACCGCAAGTAAGCTGCAGTAGCCGAACGCAAG‑AAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCTCTTCGCGGcc > 2:225692/1‑114 (MQ=255) aGAAGCGCGACATCGTTGCCCTGAAAGACCGCAAGTAAGCTGCAGTAGCCGAACGCAAG‑AAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCTCTTCGCGGGCAAGGC‑‑CGCGAAGAGGc > 6:374177/1‑130 (MQ=37) aGAAGCGCGACATCGTTGCCCTGAAAGACCGCAAGTAAGCTGCAGTAGCCGAACGCAAG‑AAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCTCTTCGCGGGCAAGGC‑‑CGCGAAGAGGc < 5:374177/130‑1 (MQ=37) gAAGCGCGACATCGTTGCCCTGAAAGACCGCAAGTAAGCTGCAGTAGCCGAACGCAAG‑AAGGCTGCCCTCGGGCAGCCTTTTTTT‑TTTGTCCTGTGCCGGCCTCTTCGCGGCCATGCC‑‑CGCGAAGCGGCCGGCCCCGACACCCCAAAAc > 3:74225/1‑149 (MQ=255) cgcgACATCGTTGCCCTGAAAGACCGCAAGTAAGCTGCAGTAGCCGAACGCAAG‑AAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCTCTTCGCGGCCTTGCC‑‑CGCGAAGAGGCCGGCACAGACACCACAAAACCt > 5:419855/1‑147 (MQ=255) gACATCGTTGCCCTGAAAGACCGCAAGTAAGCTGCAGTAGCCGAACGCAAG‑AAGGCTGCCCTCGGACAGCC‑TTTTTTATTTGTCCTGTGCCGGCCTCTTCGCGGCCTTGCC‑‑CGCGAAGAGGCCGGCACAGACACCACAAAACCTCAGtt > 1:328995/1‑149 (MQ=255) tCGTTGCCCTGAAAGACCGCAAGTAAGCTGCAGTAGCCGAACGCAAG‑AAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCTCTTCGCGGGCAAGGC‑‑CGCGAaga > 1:386189/1‑115 (MQ=37) tCGTTGCCCTGAAAGACCGCAAGTAAGCTGCAGTAGCCGAACGCAAG‑AAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCTCTTCGCGGGCAAGGC‑‑CGCGAaga < 2:386189/115‑1 (MQ=37) ccTGAAAGACCGCAAGTAAGCTGCAGTAGCCGAACGCAAG‑AAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCTCTTCGCGGCCTTTCC‑‑CGCGAAGAGGCCGGCACAGACACCACAAAACCACAGATTTTATccgccc > 8:161000/1‑149 (MQ=255) cTGAAAGACCGCAAGTAAGCTGCAGTAGCCGAACGCAAG‑AAGGCTGCCCGAGGGCAGCCttc > 2:362049/1‑61 (MQ=38) cTGAAAGACCGCAAGTAAGCTGCAGTAGCCGAACGCAAG‑AAGGCTGCCCGAGGGCAGCCttc < 1:362049/62‑2 (MQ=38) gAAAGACCGCAAGTAAGCTGCAGTAGCCGAACGCAAG‑AAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCTCTTcg < 4:128222/87‑1 (MQ=255) gAAAGACCGCAAGTAAGCTGCAGTAGCCGAACGCAAG‑AAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCTCTTcg > 3:128222/1‑87 (MQ=255) gAAAGACCGCAAGTAAGCTGCAGTAGCCGAACGCAAG‑AAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCTCTTCGCGGCCTTGCC‑‑CGCGAAGAGGCCGGCACAGACACCACAAAAc < 5:195303/128‑1 (MQ=39) gAAAGACCGCAAGTAAGCTGCAGTAGCCGAACGCAAG‑AAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCTCTTCGCGGCCTTGCC‑‑CGCGAAGAGGCCGGCACAGACACCACAAAAc > 6:195303/1‑128 (MQ=39) aGACCGCAAGTAAGCTGCAGTAGCCGAACGCAAG‑AAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGGGCCGGCCTCTTCGCGGCCTTGCC‑‑CGCGAAGAGGCCGGCACAGACACCACAAAACCTCAGTTTTTCTCCGCCCGCTCAc < 7:161000/149‑1 (MQ=255) gCTGCAGTAGCCGAACGCAAG‑AAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCTCTTCGCGGCCTTGCC‑‑CGCGAAGAGCCCCGCACAGACCCCACAAAACCTCac > 5:420508/1‑116 (MQ=255) tGCAGTAGCCGAACGCAAG‑AAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCTCTTCGCGGCCTTGCC‑‑CGCGAAGAGGCCGGGCCAGCCACCACAAACCCTCAGTTTTTCTCCGCCCCCTCACGCAGCCCTGTAAggg > 3:300727/1‑149 (MQ=255) gCAGTAGCCGAACGCAAG‑AAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCTCTTCGCCGCCTTGCC‑‑CGCGAAGAGGCCGGCACAGCCACCCCAAAACCTCAGTTTTTATCCCCCCGCTCACGCAGCCCGTTCAggg > 6:157603/1‑148 (MQ=255) gTAGCCGAACGCAAG‑AAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCTCTTCGCGGCCTTGCC‑‑CGCGAAGAGGCCGGCACAGACACCACAAAACCTCAGTTTTTCTCCGCCCGCTCACGCAGCCCTTTCAGGGTAtt < 6:419855/149‑1 (MQ=255) aGCCGAACGCAAG‑AAGGCTGCCCTCGGGCATCC‑TTTTTTATTTGTCCTGTGCCGGCATCTTCGCGGCCTTGCCCTCGCTATGAGGCCGGCACAGACACCACAAAACCTCAGTTTTTCTCCGCCCGCTCACGCAGCCCTTTCAGGGTAtt < 1:126550/149‑1 (MQ=255) gAACGCAAG‑AAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCTCTTAGCGGCCTTGCC‑‑CGCGAAGAGGCCGGCACAGACACCACAAAACCTCAGTTTTTCTCCGCCCGCGCACGCAGCCCGTTCAGGGAATTGAACgg > 5:374007/1‑149 (MQ=255) gAACGCAAG‑AAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCACATAGCGGGCATGGC‑‑CGCGAATAGGGCGGGCCCGAAAACCCAAAACCACACTTTTTATACCCCCCCGCACCCCCCCCGTTAAAGGTATTTAAAgg > 2:340994/1‑149 (MQ=255) aaCGCAAG‑AAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCTCTTGGCGGCCTTGCC‑‑CGCGATGAGGCCGGCACAGACACCACAAAACCTCAGTTTTTCTCCGCCCGCTCACGCAGCCCTTTCAGGGTATTGAACGgc < 7:348315/149‑1 (MQ=255) taaaaaagGCTGCCCGAGGGCAGCC‑TTCTTTATTTGTCCTGTGCCGGCCTCTTCGCGGCCTTGCC‑‑CGCGAAGAGGCCGGCACAGACACCACAAAACCTCAGTTTTTCTCCGCCCGCTCACGCAGCCCTTTCAGGGTATTGAACGGCGCa < 2:95878/144‑1 (MQ=255) aag‑aagGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCTCTTCGCGGCCTTGCC‑‑CGCGAAGAGGCCGGCACAGACACCACAAAACCACAGTTTTTATACGCCCGCTCACGCAGCCCTTTCAGGGTATTTAACGGCGCATc > 6:363325/1‑149 (MQ=255) agGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCTCTTCGCGGCCTTGCC‑‑CGCGAAGAGGCCGGCACAGACACCACAAAACCTCAGTTTTTCTCCGCCCGCTCACGCAGCCCTTTCa > 5:169664/1‑126 (MQ=39) agGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCTCTTCGCGGCCTTGCC‑‑CGCGAAGAGGCCGGCACAGACACCACAAAACCTCAGTTTTTCTCCGCCCGCTCACGCAGCCCTTTCa < 6:169664/126‑1 (MQ=39) gcggCCCTCGGGAAG‑CTTTTTTTATTTGGCCTGGGCCGGCCTCTTCGCGGCCTTGCC‑‑CGCTAAGAGGCCGGCACAGACACCACAAAACCTCAGTTTTTCTCCGCCCGCTCACGCAGCCCTTTCAGGGTATTGAACGGCGCATCcaccac < 6:374007/146‑1 (MQ=255) cccTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCTCTTCGCGGCCTTGCC‑‑CGCGAAGAGGCCGGCACAGACACCACAAAACCTCAGTTTTTCTCCGCCCGCTCACGCAGCCCTTTCAGGGTATTGAATGGCGCATCCACCACGAAc > 6:179483/1‑149 (MQ=255) cTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCTCTTCGCGGCCTTGCC‑‑CGCGAAGAGGCCGGCACAGACACCACAAAACCTCAGTTTTTCTCCGCCCGCTCACGCAGCCCTTTCAGGGTATTGAATGGCGCATCCACCACGAACtt < 5:179483/149‑1 (MQ=255) ctatctgCCTTTTTTT‑TTTGTCCTGTGCGGGCCTCTTCGCGGCCTTGCC‑‑CGGGAAGAGGCCGGCACAGACACCACAAAACCTCAGTTTTTCTCCGCCCGCTCACGCAGCCCTTTCAGGTTATTGAACGGCTCATCCACCACGAACttg < 1:263214/142‑1 (MQ=255) ggCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCTCTTCGCGGCCTTGCC‑‑CGCGAAGAGGCCGGCACAGACACCACAAAACCTCAGTTTTTCTCCGCCCGCTCACGCAGCCCTTTCAGGGTATTGAACGGCGCATCCACCACGAACttgttg < 2:63652/149‑1 (MQ=255) | CGCACTGGAAAGAAATGCTCTCCAGCCCGTACAAGATCGGCCGTCCGCGCCAGCTGTACACCGGCGAGCAGAAGCGCGACATCGTTGCCCTGAAAGACCGCAAGTAAGCTGCAGTAGCCGAACGCAAG‑AAGGCTGCCCTCGGGCAGCCTTTTTTTATTTTTCTGGTGCCGGCCTCTTCGCGGCCTTGCC‑‑CGCGAAGAGGCCGGCACAGACACCACAAAACCTCAGTTTTTCTCCGCCCGCTCACGCAGCCCTTTCAGGGTATTGAACGGCGCATCCACCACGAACTTGTTG > NC_002947/4740657‑4740947 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |