| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 557,332 | Δ1 bp | 10.2% | intergenic (+75/‑134) | rpsN → / → rpsH | 30S ribosomal protein S14/30S ribosomal protein S8 |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 557,332 | 0 | T | . | 10.2% | 259.7 / 25.0 | 88 | intergenic (+75/‑134) | rpsN/rpsH | 30S ribosomal protein S14/30S ribosomal protein S8 |
| Reads supporting (aligned to +/- strand): ref base T (42/37); new base . (5/4); total (47/41) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.87e-01 | |||||||||||
AACATGCTGCGTCAAGCTGCAATGCGCGGTGACGTACCAGGTCTGGTCAAGGCCTCCTGGTAATCGCTGCAGGCAAGGCGCGGGTGGAAGGGGAGCAA‑TC‑TTCCGACCGCCGGTGACCTTGCCAA‑CAAACAAGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGACCGGCTCACCTGAGCCTGGGTTTTTGCCCAAACGGTTCGGGTGGTTGTCATAGCCGCAAGGCTAATAATTCTTGTATCAGGAGCATCTAGCCCATGAGTATG > NC_002947/557195‑557474 | aaCATGCTGCGTCAAGCTGCAATGCGCGGTGACGTACCAGGTCTGGTCAAGGCCTCCTGGTAATCGCTGCAGGCAAGGCGCGGGTGGAAGGGGAGCAA‑TC‑TTCCGACCGCCGGTGACCTTGCCAA‑CAAACAAGCCCCTATAT‑GGGGCtt > 3:298850/1‑149 (MQ=255) tgcGTCAAGCTGCAATGCGCGGTGACGTACCAGGTCTGGTCAAGGCCTCCTGGTAATCGCTGCAGGCAAGGCGCGGGTGGAAGGGGAGCAA‑TC‑TTCCGACCGCCGGTGACCTTGCCAA‑CAAACAAGCCCCTATAT‑GGGGCTTgtttcgt > 8:38386/1‑149 (MQ=255) cGTCAAGCTGCAATGCGCGGTGACGTACCAGGTCTGGTCAAGGCCTCCTGGTAATCGCTGCAGGCAAGGCGCGGGTGGAAGGGGAGCAA‑TC‑TTCCGACCGCCGGTGACCTTGCCAA‑CAAACAAGCCCC‑ATATAGGGGCTTgtttgtt < 1:181694/147‑4 (MQ=255) aaGCTGCAATGCGCGGTGACGTACCAGGTCTGGTCAAGGCCTCCTGGTAATCGCTGCAGGCAAGGCGCGGGTGGAAGGGGAGCAA‑TC‑TTCCGACCGCCGGTGACCTTGCCAA‑CAAACAAGCCCCTATAT‑GGGGCTTGTTTCGTTTCTg < 5:358411/148‑1 (MQ=255) gCTGCAATGCGCGGTGACGTACCAGGTCTGGTCAAGGCCTCCTGGTAATCGCTGCAGGCAAGGCGCGGGTGGAAGGGGAGCAA‑TC‑TTCCGACCGCCGGTGACCTTGCCAA‑CAAACAAGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCt > 5:41041/1‑149 (MQ=255) tGCAATGCGCGGTGACGTACCAGGTCTGGTCAAGGCCTCCTGGTAATCGCTGCAGGCAAGGCGCGGGTGGAAGGGGAGCAA‑TC‑TTCCGACCGCCGGTGACCTTGCCAA‑CAAACAAGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTtg > 3:300684/1‑149 (MQ=255) gCAATGCGCGGTGACGTACCAGGTCTGGTCAAGGCCTCCTGGTAATCGCTGCAGGCAAGGCGCGGGTGGAAGGGGAGCAA‑TC‑TTCCGACCGCCGGTGACCTTGCCAA‑CAAACAAGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTtgt > 1:385261/1‑149 (MQ=255) cAATGCGCGGTGACGTACCAGGTCTGGTCAAGGCCTCCTGGTAATCGCTGCAGGCAAGGCGCGGGTGGAAGGGGAGCAA‑TC‑TTCCGACCGCCGGTGACCTTGCCAA‑CAAACAAGCCCCTATAT‑GGGGCTTgtttcgt > 4:48699/1‑137 (MQ=255) cAATGCGCGGTGACGTACCAGGTCTGGTCAAGGCCTCCTGGTAATCGCTGCAGGCAAGGCGCGGGTGGAAGGGGAGCAA‑TC‑TTCCGACCGCCGGTGACCTTGCCAA‑CAAACAAGCCCCTATAT‑GGGGCTTgtttcgt < 3:48699/137‑1 (MQ=255) gcgcGGTGACGTACCAGGTCTGGTCAAGGCCTCCTGGTAATCGCTGCAGGCAAGGCGCGGGTGGAAGGGGAGCAA‑TC‑TTCCGACCGCCGGTGACCTTGCCAA‑CAAACAAGCCCCTATAT‑GGGGCTTgtttcgtttc > 2:49192/1‑136 (MQ=255) tGACGTACCAGGTCTGGTCAAGGCCTCCTGGTAATCGCTGCAGGCAAGGCGCGGGTGGAAGGGGAGCAA‑TC‑TTCCGACCGCCGGTGACCTTGCCAA‑CAAACAAGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGa > 1:340086/1‑149 (MQ=255) aCGTACCAGGTCTGGTCAAGGCCTCCTGGTAATCGCTGCAGGCAAGGCGCGGGTGGAAGGGGAGCAA‑TC‑TTCCGACCGCCGGTGACCTTGCCAA‑CAAACAAGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGAc < 2:385261/148‑1 (MQ=255) aCGTACCAGGTCTGGTCAAGGCCTCCTGGTAATCGCTGCAGGCAAGGCGCGGGTGGAAGGGGAGCAA‑TC‑TTCCGACCGCCGGTGACCTTGCCAA‑CAAACAAGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGAc < 2:340086/148‑1 (MQ=255) ccAGGTCTGGTCAAGGCCTCCTGGTAATCGCTGCAGGCAAGGCGCGGGTGGAAGGGGAGCAA‑TC‑TTCCGACCGCCGGTGACCTTGCCAA‑CAAACAAGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGACCGGCt < 4:300684/148‑1 (MQ=255) tCAAGGCCTCCTGGTAATCGCTGCAGGCAAGGCGCGGGTGGAAGGGGAGCAA‑TC‑TTCCGACCGCCGGTGACCTTGCCAA‑CAAACAAGCCCC‑ATATAGGGGCTTgttt > 7:204659/1‑107 (MQ=39) tCAAGGCCTCCTGGTAATCGCTGCAGGCAAGGCGCGGGTGGAAGGGGAGCAA‑TC‑TTCCGACCGCCGGTGACCTTGCCAA‑CAAACAAGCCCC‑ATATAGGGGCTTgttt < 8:204659/107‑1 (MQ=39) tCAAGGCCTCCTGGTAATCGCTGCAGGCAAGGCGCGGGTGGAAGGGGAGCAA‑TC‑TTCCGACCGCCGATGACCTTGCCAA‑CAAACAAGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGAc < 4:394070/133‑1 (MQ=255) tCAAGGCCTCCTGGTAATCGCTGCAGGCAAGGCGCGGGTGGAAGGGGAGCAA‑TC‑TTCCGACCGCCGATGACCTTGCCAA‑CAAACAAGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGAc > 3:394070/1‑133 (MQ=255) aaGGCCTCCTGGTAATCGCTGCAGGCAAGGCGCGGGTGGAAGGGGAGCAA‑TC‑TTCCGACCGCCGGTGACCTTGCCAA‑CAAACAAGCCCCTATAT‑gg > 6:409912/1‑96 (MQ=255) aaGGCCTCCTGGTAATCGCTGCAGGCAAGGCGCGGGTGGAAGGGGAGCAA‑TC‑TTCCGACCGCCGGTGACCTTGCCAA‑CAAACAAGCCCCTATAT‑gg < 5:409912/96‑1 (MQ=255) aGGCCTCCTGGTAATCGCTGCAGGCAAGGCGCGGGTGGAAGGGGAGCAA‑TC‑TTCCGACCGCCGGTGACCTTGCCAA‑CAAACAAGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGACCGGCTCACCTGAGCCTggg > 8:179994/1‑149 (MQ=255) ggCCTCCTGGTAATCGCTGCAGGCAAGGCGCGGGTGGAAGGGGAGCAA‑TC‑TTCCGACCGCCGGTGACCTTGCCAA‑CAAACAAGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTtgt > 2:26667/1‑117 (MQ=255) ggCCTCCTGGTAATCGCTGCAGGCAAGGCGCGGGTGGAAGGGGAGCAA‑TC‑TTCCGACCGCCGGTGACCTTGCCAA‑CAAACAAGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTtgt < 1:26667/117‑1 (MQ=255) gCCTCCTGGTAATCGCTGCAGGCAAGGCGCGGGTGGAAGGGGAGCAA‑TC‑TTCCGACCGCCGGTGACCTTGCCAA‑CAAACAAGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGACCGGCTCACCTGAGCCTGGGtt < 2:290786/149‑1 (MQ=255) ctcctGGTAATCGCTGCAGGCAAGGCGCGGGTGGAAGGGGAGCAA‑TC‑TTCCGACCGCCGGTGACCTTGCCAACCAAACAAGCCCCTATAT‑GGGGCTTgtttc < 1:30709/102‑1 (MQ=255) ctcctGGTAATCGCTGCAGGCAAGGCGCGGGTGGAAGGGGAGCAA‑TC‑TTCCGACCGCCGGTGACCTTGCCAA‑CAAACAAGCCCCTATAT‑GGGGCTTgtttc > 2:30709/1‑101 (MQ=255) tcctGGTAATCGCTGCAGGCAAGGCGCGGGTGGAAGGGTAGCAA‑TC‑TTCCGACCGCCGGTGACCTTGCCAA‑CAAACAAGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGACCGGCTCACCTGAGCCTGGGttttt > 1:388904/1‑149 (MQ=255) ctGGTAATCGCTGCAGGCAAGGCGCGGGTGGAAGGGTAGCAA‑TC‑TTCCGACCGCCGGTGACCTTGCCAA‑CAAACAAGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGACCGGCTCACCTGAGCCTGGGTTTTTGc < 2:388904/149‑1 (MQ=255) ctGGTAATCGCTGCAGGCAAGGCGCGGGTGGAAGGGGAGCAA‑TC‑TTCCGACCGCCTGTGACCTTGCCAA‑CAAACAAGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGACCGGCTCACCTGAGCCTGGGTTTTTGc < 7:177816/149‑1 (MQ=255) ctGGTAATCGCTGCAGGCAAGGCGCGGGTGGAAGGGGAGCAA‑TC‑TTCCGACCGCCGGTGACCTTGCCAA‑CAAACAAGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGACCGGCTCACCTGAGCCTGGGTTTTTGc > 1:305939/1‑149 (MQ=255) ggTAATCGCTGCAGGCAAGGCGCGGGTGGAAGGGGAGCAA‑TC‑TTCCGACCGCCGGTGACCTTGCCAA‑CAAACAAGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGACCGGCTCACCTGAGCCTGGGTTTTTGcc > 6:128995/1‑148 (MQ=255) gTAATCGCTGCAGGCAAGGCGCGGGTGGAAGGGGAGCAA‑TC‑TTCCGACCGCCGGTGACCTTGCCAA‑CAAACAAGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTtgt > 4:312199/1‑108 (MQ=255) gTAATCGCTGCAGGCAAGGCGCGGGTGGAAGGGGAGCAA‑TC‑TTCCGACCGCCGGTGACCTTGCCAA‑CAAACAAGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTtgt < 3:312199/108‑1 (MQ=255) tAATCGCTGCAGGCAAGGCGCGGGTGGAAGGGGAGCAACTCATTCCGACCGCCGGTGACCTTGCCAA‑CAAACAAGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGACCGGCTCACCTGAGCCTGGGTTTTTGccc < 1:135934/149‑1 (MQ=255) tAATCGCTGCAGGCAAGGCGCGGGTGGAAGGGGAGCAA‑TC‑TTCCGACCGCCGGTGACCTTGCCAA‑CAAACAAGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGACCGGCTCACCTGAGCCTGGGTTTTTGCCCa > 3:328942/1‑148 (MQ=255) tAATCGCTGCAGGCAAGGCGCGGGTGGAACGGGACCAA‑TC‑TTCCGACCGCCGGTGACCTTGCCAA‑CAAACAAGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTAGTGTCTAGAATGACCGGCTCACCTGAGCCTGGGTTTTTGCCCa > 4:298333/1‑148 (MQ=255) aTCGCTGCAGGCAAGGCGCGGGTGGAAGGGGATCAA‑TC‑TTACGAACGCCGGTTACCTTGACAA‑CAAACAAGCCCCTATAT‑GGGTCTTGTTTCGTTTCTGACTTGTGACTAGAATGACCGGCTCAACTGAGCCAGGGTATTTTCCCAAAc > 1:319661/1‑149 (MQ=255) aTCGCTGCAGGCAAGGCGCGGGTGGAAGGGGAGCAA‑TC‑TTCCGACCGCCGGTGACCTTGCCAA‑CAAACAAGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGACCGGCTCACCTGAGCCTGGGTTTTTGCCCaaa < 4:328942/148‑1 (MQ=255) gCAAGGCGCGGGTGGAAGGGGAGCAA‑TC‑TTCCGACCGCCGGTGACCTTGCCAA‑CAAACAAGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGACCgg < 4:371432/110‑1 (MQ=255) gCAAGGCGCGGGTGGAAGGGGAGCAA‑TC‑TTCCGACCGCCGGTGACCTTGCCAA‑CAAACAAGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGACCgg > 3:371432/1‑110 (MQ=255) gCAAGGCGCGGGTGGAAGGGGAGCAA‑TC‑TTCCGACCGCCGGTGACCTTGCCAA‑CAAACAAGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGACCGGCTCACCTGAGCCTGGGTTTTTGCCCAAACGGTTCGggtg < 4:298850/149‑1 (MQ=255) cAAGGCGCGGGTGGAAGGGGAGCAA‑TC‑TTCCGACCGCCGGTGACCTTGCCAA‑CAAACAAGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGACAGGCTCACCTGAGCCTGGGTTTTTGCCCAAACGGTTCGggtgg > 3:305708/1‑149 (MQ=255) aaGGCGCGGGTGGAAGGGGAGCAA‑TC‑TTCCGACCGCCGGTGACCTTGCCAA‑CAAACAAGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGACCGGCTCACCTGAGCCTGGGTTTTTGCCCAAACGGTTCGggtggt > 2:372054/1‑149 (MQ=255) aaGGCGCGGGTGGAAGGGGAGCAA‑TC‑TTCCGACCGCCGGTGACCTTGCCAA‑CAAACAAGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGACCGGCTCACCTGAGCCTGGGTTTTTGCCCAAACGGTTCGggtggt > 2:61001/1‑149 (MQ=255) aGGCGCGGGTGGAAGGGGAGCAA‑TC‑TTCCGACCGCCGGTGACCTTGCCAA‑CAAACAAGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGACCGGCTCACCTGAGCCTGGGTTTTTGCCCAAACGGTTCGGGTGGtt < 7:38386/149‑1 (MQ=255) cgcgGGTGGAAGGGGAGCAA‑TC‑TTCCGACCGCCGGTGACCTTGCCAA‑CAAACAAGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGACAGGCTCACCTGAGCCTGGGTTTTTGCCCAAACGGTTCGGGTGGTTGTc < 4:305708/149‑1 (MQ=255) gcgGGTGGAAGGGGAGCAA‑TC‑TTCCGACCGCCGGTGACCTTGCCAA‑CAAACAAGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGACCGGCTCACCTGAGCCTGGGTTTTTGCCCAAACGGTTCGGGTGGTTGTCa > 3:67203/1‑149 (MQ=255) ggTGGAAGGGGAGCAA‑TC‑TTCCGACCGCCGGTGACCTTGCCAA‑CAAACAAGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATg > 3:132898/1‑95 (MQ=255) ggTGGAAGGGGAGCAA‑TC‑TTCCGACCGCCGGTGACCTTGCCAA‑CAAACAAGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATg < 4:132898/95‑1 (MQ=255) gAAGGGGAGCAA‑TC‑TTCCGACCGCCGGTGACCTTGCCAA‑CAAACAAGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGACCGGCTCACCTGAGCCTGGGTTTTTGCCCAAACGGTTCGGGTGGTTGTCATAGCCg > 2:22446/1‑148 (MQ=255) aaGGGGAGCAA‑TC‑TTCCGACCGCCGGTGACCTTGCCAA‑CAAACAAGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGACCGGGTAACCTGAGCCTGGGTTTTTGCCCAAACGGTTCGGGTGGTTGTCATAGCCGc > 1:336783/1‑148 (MQ=255) aggttaGCAA‑TC‑TTCCGACCTCAGGTGACCTTGCCAA‑CAAACAAGCCACTTTAT‑GGTGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATTACGGTCTAACCTGATCCTGTGTTTTTTCCCAAACGGTTAGGGTGGTTGTCATAGCAGCaa < 2:319661/144‑1 (MQ=255) aGGGGAGCAA‑TC‑TTCCGACCGCCGGTGACCTTGCCAA‑CAAACAAGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGACCGGCTCACCTGAGCCTGGGTTTTTGCCCAAACGGTTCGGGTGGTTGTCATAGCCGCaa < 2:305939/149‑1 (MQ=255) gAGCAA‑TC‑TTCCGACCGCCGGTGACCTTGCCAA‑CAAACAAGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGACCGGCTCACCTGAGCCTGGGTTTTTGCCCAAACGGTTCGGGTGGTTGTCATAGCCGCAAGGc > 8:132079/1‑148 (MQ=255) gCAA‑TC‑TTCCGACCGCCGGTGACCTTGCCAA‑CAAACAAGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGACCGGCTCACCTGAGCCTGGGTTTTTGCCCAAACGGTTCGGGTGGTTGTCATAGCCGCAAGGCtaa < 5:128995/149‑1 (MQ=255) cAA‑TC‑TTCCGACCGCCGGTGACCTTGCCGA‑CAAACAAGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGACCGGCTCACCTGAGCCTGGGTTTTTGCCCAAACGGTTCGGGTGGTTGTCATAGCCGCAAGGCtaa > 4:352909/1‑148 (MQ=255) cAA‑TC‑TTCCGACCGCCGGTGACCTTGCCAA‑CAAACAAGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGACCGGCTCACCTGAGCCTGGGTTTTTGCCCAAACGGTTCGGGTGGTTGTCATAGCCGCAAGGCtaat < 1:22446/149‑1 (MQ=255) aa‑TC‑TTCCGACCGCCGGTGACCTTGCCAA‑CAAACAAGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGACCGGCTCACCTGAGCCTGGGTTTTTGCCCAAACGGTTCGGGTGGTTGTCATAGCCGCAAGGCtaat > 4:300466/1‑148 (MQ=255) a‑TC‑TTCCGACCGCCGGTGACCTTGCCAA‑CAAACAAGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGACCGGCTCACCTGAGCCTGGGTTTTTGCCCAAACGGTTCGGGTGGTTGTCATAGCCGCAAGGCtaataa < 4:67203/149‑1 (MQ=255) ttCCGACCGCCGGTGACCTTGCCAA‑CAAACAAGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGACCGGCTCACCTGAGCCTGGGTTTTTGCCCAAACGGTTCGGGTGGTTGTCATAGCCGCAAGGCTAATAATTc > 7:209396/1‑149 (MQ=255) ccaaCCGCCGGTGACCTTGCCAA‑CAAACAAGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGACCGGCTCACCTGAGCCTGGGTTTTTGCCCAAACGGTTCGGGTGGTTGTCATAGCCGCAAGGCTAATAATTCtt < 1:410591/146‑1 (MQ=255) ccGACCGCCGGTGACCTTGCCAA‑CAAACAAGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGACCGGCTCACCTGAGCCTGGGTTTTTGCCCAAACGGTTCGGGTGGTTGTCATAGCCGCAAGGCTAATAATTCt < 1:372054/148‑1 (MQ=255) cgccgGTGACCTTGCCAA‑CAAACAAGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGACCGGCTCACCTGAGCCTGGGTTTTTGCCCAAACGGTTCGGGTGGTTGTCATAGCCGCAAGGCTAATAATTCTTGTAt > 5:42270/1‑148 (MQ=255) gccgGTGACCTTGCCAA‑CAAACAAGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGAc < 5:344359/71‑1 (MQ=255) gccgGTGACCTTGCCAA‑CAAACAAGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGAc > 6:344359/1‑71 (MQ=255) ccgGTGACCTTGCCAA‑CAAACAAGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGACCGGCTCACCTGAGCCTGGGTTTTTGCCCAAACGGTTCGGGTGGTTGTCATAGCCGCAAGGCTAATAATTCTTGt < 6:335481/144‑1 (MQ=255) ccgGTGACCTTGCCAA‑CAAACAAGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGACCGGCTCACCTGAGCCTGGGTTTTTGCCCAAACGGTTCGGGTGGTTGTCATAGCCGCAAGGCTAATAATTCTTGt > 5:335481/1‑144 (MQ=255) cgGTGACCTTGCCAA‑CAAACAAGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGACCGGCTCACCTGAGCCTGGGTTTTTGCCCAAACGGTTCGGGTGGTTGTCATAGCCGCAAGGCTAATAATTCTTGTATCAgg < 2:336783/149‑1 (MQ=255) aCCTTGCCAA‑CAAACAAGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGACCGGCTCACCTGAGCCTGGGTTTTTGCCCAAACGGTTCGGGTGGTTGTCATAGCCGCAAGGCTAATAATTCTTGTATCAGGAGCAt < 3:240911/149‑1 (MQ=255) ccTTGCCAA‑CAAACAAGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGACCGGCTCACCTGAGCCTGGGTTTTTGccc < 2:247746/91‑1 (MQ=255) cTTGCCAA‑CAAACAAGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGACCGGCTCACCTGAGCCTGGGTTTTTGCCCAAACGGTTCGGGTGGTTGTCATAGCCGCAAGGCTAATAATTCTTGTATCAGGAGCATc > 2:391168/1‑148 (MQ=255) ccAA‑CAAACAAGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGACCGGCTCACCTGAGCCTGGGTTTTTGCCCAAACGGTTCGGGTGGTTGTCATAGCCGCAAGGCTAATAATTCtt < 5:351015/130‑1 (MQ=255) ccAA‑CAAACAAGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGACCGGCTCACCTGAGCCTGGGTTTTTGCCCAAACGGTTCGGGTGGTTGTCATAGCCGCAAGGCTAATAATTCtt > 6:351015/1‑130 (MQ=255) caa‑caaACAAGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGACCGGCTCACCTGAGCCTGGGTTTTTGCCCAAACGGTTCGGGTGGTTGTCATAGCCGCAAGGCTAATAATTCTTGTATCAGGAGCATCTAGcc > 7:265317/1‑148 (MQ=255) aa‑caaacaAGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGACCGGCTCACCTGAGCCTGGGTTTTTGCCCAAACGGTTCGGGTGGTTGTCATAGCCGCAAGGCTAATAATTCTTGTATCAGGAGCATCTAGCCCa > 5:13342/1‑149 (MQ=255) aa‑caaacaAGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGACCGGCTCACCTGAGCCTGGGTTTTTGCCCAAACGGTTCGGGTGGTTGTCATAGCCGCAAGGCTAATAATTCTTGTATCAGGAGCATCTAGCCCa > 4:57349/1‑149 (MQ=255) acgaaacaaGCCCC‑ATATAGGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGACCGGCTCACCTGAGCCTGGGTTTTTGCCCAAACGGTTCGGGTGGTTGTCATAGCCGCAAGGCTAATAATTCTTGTATCAGGAGCATCTAGCCCa > 3:147575/4‑149 (MQ=255) a‑caaacaaGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGACCGGCTCACCTGAGCCTGGGTTTTTGCCCAAACGGTTCGGGTGGTTGTCATAGCCGCAAGGCTAATAATTCTTGTATCAGGAGCATCTAGc < 1:87523/145‑1 (MQ=255) a‑caaacaaGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGACCGGCTCACCTGAGCCTGGGTTTTTGCCCAAACGGTTCGGGTGGTTGTCATAGCCGCAAGGCTAATAATTCTTGTATCAGGAGCATCTAGc > 2:87523/1‑145 (MQ=255) a‑caaacaaGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGACCGGCTCACCTGAGCCTGGGTTTTTGCCCAAACGGTTCGGGTGGTTGTCATAGCCGCAAGGCTAATAATTCTTGTATCAGGAGCATCTAGCCCAt < 7:179994/149‑1 (MQ=255) aaacaaGCCCC‑ATATAGGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGACCGGCTCACCTGAGCCTGGGTTTTTGCCCAAACGGTTCGGGTGGTTGTCATAGCCGCAAGGCTAATAATTCTTGTATCAGGAGCATCTAGCCCAt > 4:358190/1‑147 (MQ=255) aacaaGCCCC‑ATATAGGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGACCGGCTCACCTGAGCCTGGGTTTTTGCCCAAACGGTTCGGGTGGTTGTCATAGCCGCAAGGCtaa < 6:291461/116‑1 (MQ=255) aacaaGCCCC‑ATATAGGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGACCGGCTCACCTGAGCCTGGGTTTTTGCCCAAACGGTTCGGGTGGTTGTCATAGCCGCAAGGCtaa > 5:291461/1‑116 (MQ=255) aacaaGCCCC‑ATATAGGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGACCGGCTCACCTGAGCCTGGGTTTTTGCCCAAACGGTTCGGGTGGTTGTCATAGCCGCAAGGCTAATAATTCTTGTATCAGGAGCATCTAGCCCAt > 2:248467/1‑146 (MQ=255) aacaaGCCCC‑ATATAGGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGACCGGCTCACCTGAGCCTGGGTTTTTGCCCAAACGGTTCGGGTGGTTGTCATAGCCGCAAGGCTAATAATTCTTGTATCAGGAGCATCTAGCCCATGa < 1:248467/148‑1 (MQ=255) aaGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGACCGGCTCACCTGAGCCTGGGTTTTTGCCCAAACGGTTCGGGTGGTTGTCATAGCCGCAAGGCTAATAATTCTTGt < 4:116411/123‑1 (MQ=255) aaGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGACCGGCTCACCTGAGCCTGGGTTTTTGCCCAAACGGTTCGGGTGGTTGTCATAGCCGCAAGGCTAATAATTCTTGt > 3:116411/1‑123 (MQ=255) aGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGACCGGCTCACCTGAGCCTGGGTTTTTGCCCAAACGGTTCGGGTGGTTGTCATAGCCGCAAGGCTAATAATTCTTGTATCAGGAGCATCTAGCCCATGAGTATg < 6:42270/149‑1 (MQ=255) | AACATGCTGCGTCAAGCTGCAATGCGCGGTGACGTACCAGGTCTGGTCAAGGCCTCCTGGTAATCGCTGCAGGCAAGGCGCGGGTGGAAGGGGAGCAA‑TC‑TTCCGACCGCCGGTGACCTTGCCAA‑CAAACAAGCCCCTATAT‑GGGGCTTGTTTCGTTTCTGCCTTGTGTCTAGAATGACCGGCTCACCTGAGCCTGGGTTTTTGCCCAAACGGTTCGGGTGGTTGTCATAGCCGCAAGGCTAATAATTCTTGTATCAGGAGCATCTAGCCCATGAGTATG > NC_002947/557195‑557474 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |