| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 1,058,257 | Δ1 bp | 6.7% | intergenic (‑186/+34) | PP_0914 ← / ← sodB | GGDEF domain‑containing protein/superoxide dismutase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 1,058,257 | 0 | A | . | 6.7% | 277.9 / 14.1 | 89 | intergenic (‑186/+34) | PP_0914/sodB | GGDEF domain‑containing protein/superoxide dismutase |
| Reads supporting (aligned to +/- strand): ref base A (43/40); new base . (3/3); total (46/43) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.45e-01 | |||||||||||
ATTAGCAGTGTATCGGTTGCCTGACCCCGCAACTTGAATGCGCTGTATCAATCTTCCAGAGGTTTGATGTTAGCGTGGTATGCGGCCTGAGCAAGCAAAACCGTGCCAGCCTGTTTGCGGCAACACAGGCACAAAAAAACCCGGCAC‑ATG‑G‑CCGGGT‑TTCTCGTTCAAGGCCGAATGACTCAGGCCTTGAAGGTCTTGCCTTCGAACTGCTCGGCAACGAAGGCCCAGTTGACCAGGTTCCAGAACGCCTCGACGTACTTCGGACGCAGGTTGCGGTAGTCGATGTAGTAGGC > NC_002947/1058112‑1058404 | aTTAGCAGTGTATCGGTTGCCTGACCCCGCAACTTGAATGCGCTGTATCAATCTTCCAGAGGTTTGATGTTAGCGTGGTATGCGGCCTGAGCAAGCAAAACCGTGCCAGCCTGTTTGCGGCAACACAGGCACAAAAAAACCCGGCAC‑At > 1:265005/1‑149 (MQ=255) gtgtATCGGTTGCCTGACCCCGCAACTTGAATGCGCTGTATCAATCTTCCAGAGGTTTGATGTTAGCGTGGTATGCGGCCTGAGCAAGCAAAACCGTGCCAGCCTGTTTGCGGCAACACAGGCACAAAAAAACCCGGCAC‑ATG‑G‑CCggg > 6:150973/1‑149 (MQ=255) tCGGTTGCCTGACCCCGCAACTTGAATGCGCTGTATCAATCTTCCAGAGGTTTGATGTTAGCGTGGTATGCGGCCTGAGCAAGCAAAACCGTGCCAGCCTGTTTGCGGCAACACAGGCACAAAAAAACCCGGCAC‑ATG‑G‑CCGGGT‑Ttct > 5:352945/1‑149 (MQ=255) tCGGTTGCCTGACCCCGCAACTTGAATGCGCTGTATCAATCTTCCAGAGGTTTGATGTTAGCGTGGTATGCGGCCTGAGCAAGCAAAACCGTGCCAGCCTGTTTGCGGCAACACAGGCACAAAAAAACCCGGCAC‑ATG‑G‑CCGGGT‑Ttc < 2:406969/148‑1 (MQ=255) tCGGTTGCCTGACCCCGCAACTTGAATGCGCTGTATCAATCTTCCAGAGGTTTGATGTTAGCGTGGTATGCGGCCTGAGCAAGCAAAACCGTGCCAGCCTGTTTGCGGCAACACAGGCAC‑AAAAAACCCGGCAC‑ATG‑G‑CCGGGT‑Ttctc > 3:344773/1‑149 (MQ=255) gTTGCCTGACCCCGCAACTTGAATGCGCTGTATCAATCTTCCAGAGGTTTGATGTTAGCGTGGTATGCGGCCTGAGCAAGCAAAACCGTGCCAGCCTGTTTGCGGCAACACAGGCACAAAAAAACCCGGCAC‑ATG‑G‑CCGGGT‑TTCTCGt > 5:193826/1‑149 (MQ=255) ccTGACCCCGCAACTTGAATGCGCTGTATCAATCTTCCAGAGGTTTGATGTTAGCGTGGTATGCGGCCTGAGCAAGCAAAACCGTGCCAGCCTGTTTGCGGCAACACAGGCACAAAAAAACCCGGca > 2:249622/1‑127 (MQ=255) ccTGACCCCGCAACTTGAATGCGCTGTATCAATCTTCCAGAGGTTTGATGTTAGCGTGGTATGCGGCCTGAGCAAGCAAAACCGTGCCAGCCTGTTTGCGGCAACACAGGCACAAAAAAACCCGGca < 1:249622/127‑1 (MQ=255) ccTGACCCCGCAACTTGAATGCGCTGTATCAATCTTCCAGAGGTTTGATGTTAGCGTGGTATGCGGCCTGAGCAAGCAAAACCGTGCCAGCCTGTTTGCGGCAACACAGGCACAAAAAAACCCGGCAC‑ATG‑G‑CCGGGT‑TTCTCGTTCaa < 4:402573/149‑1 (MQ=255) cTGACCCCGCAACTTGAATGCGCTGTATCAATCTTCCAGAGGTTTGATGTTAGCGTGGTATGCGGCCTGAGCAAGCAAAACCGTGCCAGCCTGTTTGCGGCAACACAGGCACAAAAAAACCCGGCAC‑ATG‑G‑CCGGGT‑TTCTCGTTCAAg > 7:47239/1‑149 (MQ=255) cTGACCCCGCAACTTGAATGCGCTGTATCAATCTTCCAGAGGTTTGATGTTAGCGTGGTATGCGGCCTGAGCAAGCAAAACCGTGCCAGCCTGTTTGCGGCAACACAGGCACAAAAAAACCCGGCAC‑ATG‑G‑CCGGGT‑TTCTCGTTCAAg > 2:273928/1‑149 (MQ=255) cTGACCCCGCAACTTGAATGCGCTGTATCAATCTTCCAGAGGTTTGATGTTAGCGTGGTATGCGGCCTGAGCAAGCAAAACCGTGCCAGCCTGTTTGCGGCAACACAGGCACAAAAAAACCCGGCAC‑ATG‑G‑CCGGGT‑TTCTCGTTCAAg > 6:291397/1‑149 (MQ=255) tGACCCCGCAACTTGAATGCGCTGTATCAATCTTCCAGAGGTTTGATGTTAGCGTGGTATGCGGCCTGAGCAAGCAAAACCGTGCCAGCCTGTTTGCGGCAACACAGGCACAAAAAAACCCGGCAC‑ATG‑G‑CCGGGT‑Ttc < 7:381695/139‑1 (MQ=255) tGACCCCGCAACTTGAATGCGCTGTATCAATCTTCCAGAGGTTTGATGTTAGCGTGGTATGCGGCCTGAGCAAGCAAAACCGTGCCAGCCTGTTTGCGGCAACACAGGCACAAAAAAACCCGGCAC‑ATG‑G‑CCGGGT‑Ttc > 8:381695/1‑139 (MQ=255) gACCCCGCAACTTGAATGCGCTGTATCAATCTTCCAGAGGTTTGATGTTAGCGTGGTATGCGGCCTGAGCAAGCAAAACCGTGCCAGCCTGTTTGCGGCAACACAGGCACAAAAAAACCCGGCAC‑ATG‑G‑CCGGGT‑TTCTCGTTCAAGGc > 6:318039/1‑149 (MQ=255) gACCCCGCAACTTGAATGCGCTGTATCAATCTTCCAGAGGTTTGATGTTAGCGTGGTATGCGGCCTGAGCAAGCAAAACCGTGCCAGCCTGTTTGCGGCAACACAGGCACAAAAAAACCAGGCAC‑ATG‑G‑CCGGGT‑TTCTCGTTCAAgg > 4:235179/1‑148 (MQ=255) cccGCAACTTGAATGCGCTGTATCAATCTTCCAGAGGTTTGATGTTAGCGTGGTATGCGGCCTGAGCAAGCAAAACCGTGCCAGCCTGTTTGCGGCAACACAGGCACAAAAAAACCCGGCAC‑ATG‑G‑CCGGGT‑TTCTCGTTCAAGGCCg > 4:75844/1‑148 (MQ=255) ccGCAACTTGAATGCGCTGTATCAATCTTCCAGAGGTTTGATGTTAGCGTGGTATGCGGCCTGAGCAAGCAAAACCGTGCCAGCCTGTTTGCGGCAACACAGGCACAAAAAAACCCGGC‑C‑ATGTG‑CCGGGt‑tttttt > 3:284167/1‑133 (MQ=255) ccGCAACTTGAATGCGCTGTATCAATCTTCCAGAGGTTTGATGTTAGCGTGGTATGCGGCCTGAGCAAGCAAAACCGTGCCAGCCTGTTTGCGGCAACACAGGCACAAAAAAACCCGGC‑C‑ATGTG‑CCGGGt‑tttttt < 4:284167/137‑5 (MQ=255) cGCAACTTGAATGCGCTGTATCAATCTTCCAGAGGTTTGATGTTAGCGTGGTATGCGGCCTGAGCAAGCAAAACCGTGCCAGCCTGTTTGCGGCAACACAGGCACAAAAAAACCCGGCAC‑ATG‑G‑CCGGGT‑TTCTCGTTCAAGGCCGAAt > 5:164505/1‑149 (MQ=255) cAACTTGAATGCGCTGTATCAATCTTCCAGAGGTTTGATGTTAGCGTGGTATGCGGCCTGAGCAAGCAAAACCGTGCCAGCCTGTTTGCGGCAACACAGGCACAAAAAAACCCGGCAC‑ATG‑G‑CCGGGT‑TTCTCGTTCAAGGCCGAATGa < 5:12686/149‑1 (MQ=255) aaCTTGAATGCGCTGTATCAATCTTCCAGAGGTTTGATGTTAGCGTGGTATGCGGCCTGAGCAAGCAAAACCGTGCCAGCCTGTTTGCGGCAACACAGGCACAAAAAAACCCGGCAC‑ATG‑G‑CCGGGT‑TTCTCGTTCAAGGCCGAATGAc < 5:150973/149‑1 (MQ=255) aaCTTGAATGCGCTGTATCAATCTTCCAGAGGTTTGATGTTAGCGTGGTATGCGGCCTGAGCAAGCAAAACCGTGCCAGCCTGTTTGCGGCAACACAGGCACAAAAAAACCCGGCAC‑ATG‑G‑CCGGGT‑TTCTCGTTCAAGGCCGAATGAc > 5:52449/1‑149 (MQ=255) gAATGCGCTGTATCAATCTTCCAGAGGTTTGATGTTAGCGTGGTATGCGGCCTGAGCAAGCAAAACCGTGCCAGCCTGTTTGCGGCAACACAGGCACAAAAAAACCCGGCAC‑ATG‑G‑CCGGGT‑TTCTCGTTCAAGGCCGAATGACTCa < 2:265005/147‑1 (MQ=255) gAATGCGCTGTATCAATCTTCCAGAGGTTTGATGTTAGCGTGGTATGCGGCCTGAGCAAGCAAAACCGTGCCAGCCTGTTTGCGGCAACACAGGCACAAAAAAACCCGGCAC‑ATG‑G‑CCGGGT‑TTCTCGTTCAAGGCCGAATGACTCAgg > 6:222936/1‑149 (MQ=255) gAATGCGCTGTATCAATCTTCCAGAGGTTTGATGTTAGCGTGGTATGCGGCCTGAGCAAGCAAAACCGTGCCAGCCTGTTTGCGGCAACACAGGCACAAAAAAACCCGGCAC‑ATG‑G‑CCGGGT‑TTCTCGTTCAAGGCCGAATGACTCAg < 3:74430/148‑1 (MQ=255) aaTGCGCTGTATCAATCTTCCAGAGGTTTGATGTTAGCGTGGTATGCGGCCTGAGCAAGCAAAACCGTGCCAGCCTGTTTGCGGCAACACAGGCACAAAAAAACCCGGCACTATG‑G‑CCGGGT‑TTCTCGTTCAAGGCCGAATGACTCAg < 1:273928/148‑1 (MQ=255) aaTGCGCTGTATCAATCTTCCAGAGGTTTGATGTTAGCGTGGTATGCGGCCTGAGCAAGCAAAACCGTGCCAGCCTGTTTGCGGCAACACAGGCACAAAAAAACCCGGCAC‑ATG‑G‑CCGGGTCTTCTCGTTCAAGGCCGAATGACTCAg < 1:213579/148‑1 (MQ=255) aTGCGCTGTATCAATCTTCCAGAGGTTTGATGTTAGCGTGGTATGCGGCCTGAGCAAGCAAAACCGTGCCAGCCTGTTTGCGGCAACACAGGCACAAAAAAACCCGGCAC‑ATG‑G‑CCGGGT‑TTCTCGTTCAAGGCCGAATGACTCAGGcc < 6:352945/149‑1 (MQ=255) aTGCGCTGTATCAATCTTCCAGAGGTTTGATGTTAGCGTGGTATGCGGCCTGAGCAAGCAAAACCGTGCCAGCCTGTTTGCGGCAACACAGGCACAAAAAAACCCGGCAC‑ATG‑G‑CCGGGT‑TTCTCGTTCAAGGCCGAATGACTCAGGcc < 6:193826/149‑1 (MQ=255) gcTGTATCAATCTTCCAGAGGTTTGATGTTAGCGTGGTATGCGGCCTGAGCAAGCAAAACCGTGCCAGCCTGTTTGCGGCAACACAGGCACAAAAAAACCCGGCAC‑ATG‑G‑CCGGGT‑TTCTCGTTCAAGGCCGAATGACTCAGGCCTTg > 8:208841/1‑148 (MQ=255) tGTATCAATCTTCCAGAGGTTTGATGTTAGCGTGGTATGCGGCCTGAGCAAGCAAAACCGTGCCAGCCTGTTTGCGGCAACACAGGCACAAAAAAACCCGGCAC‑ATG‑G‑CCGGGT‑TTCTCGTTCAAGGCCGAATGACTCAGGCCTTGAAg > 7:375173/1‑149 (MQ=255) tATCAATCTTCCAGAGGTTTGATGTTAGCGTGGTATGCGGCCTGAGCAAGCAAAACCGTGCCAGCCTGTTTGCGGCAACACAGGCACAAAAAAACCCGGCAC‑ATG‑G‑CCGGGT‑TTCTCGTTCAAGGCCGAATGACTCAGGCCTTGAAGGt < 8:375173/149‑1 (MQ=255) aTCAATCTTCCAGAGGTTTGATGTTAGCGTGGTATGCGGCCTGAGCAAGCAAAACCGTGCCAGCCTGTTTGCGGCAACACAGGCACAAAAAAACCCGGCAC‑ATG‑G‑CCGGGT‑TTCTCGTTCAAGGCCGAATGACTCAGGCCTTGAAGGTc > 8:154441/1‑149 (MQ=255) aaTCTTCCAGAGGTTTGATGTTAGCGTGGTATGCGGCCTGAGCAAGCAAAACCGTGCCAGCCTGTTTGCGGCAACACAGGCACAAAAAAACCCGGCAC‑ATG‑G‑CCGGGT‑TTCTCGTTCAAGGCCGAATGACTCAGGCCTTGAAGGTCTTg > 3:37088/1‑149 (MQ=255) aaTCTTCCAGAGGTTTGATGTTAGCGTGGTATGCGGCCTGAGCAAGCAAAACCGTGCCAGCCTGTTTGCGGCAACACAGGCACAAAAAAACCCGGCAC‑ATG‑G‑CCGGGT‑TTCTCGTTCAAGGCCGAATGACTCAGGCCTTGAAGGTCTTg > 1:36887/1‑149 (MQ=255) aaTCTTCCAGAGGTTTGATGTTAGCGTGGTATGCGGCCTGAGCAAGCAAAACCGTGCCAGCCTGTTTGCGGCAACACAGGCACAAAAAAACCCGGCAC‑ATG‑G‑CCGGGT‑TTCTCGTTCAAGGCCGAATGACTCAGGCCTTGAAGGTCTTg > 2:408897/1‑149 (MQ=255) aaTCTTCCAGAGGTTTGATGTTAGCGTGGTATGCGGCCTGAGCAAGCAAAACCGTGCCAGCCTGTTTGCGGCAACACAGGCAC‑AAAAAACCCGGCAC‑ATG‑G‑CCGGGT‑TTCTCGTTCAAGGCCGAATGACTCAGGCCTTGAAGGTCTTg < 4:344773/148‑1 (MQ=255) cTTCCAGAGGTTTGATGTTAGCGTGGTATGCGGCCTGAGCAAGCAAAACCGTGCCAGCCTGTTTGCGGCAACACAGGCACAAAAAAACCCGGC‑C‑ATGTG‑CCGGGt‑ttttt < 3:272030/110‑4 (MQ=255) cTTCCAGAGGTTTGATGTTAGCGTGGTATGCGGCCTGAGCAAGCAAAACCGTGCCAGCCTGTTTGCGGCAACACAGGCACAAAAAAACCCGGC‑C‑ATGTG‑CCGGGt‑ttttt > 4:272030/1‑107 (MQ=255) ccAGAGGTTTGATGTTAGCGTGGTATGCGGCCTGAGCAAGCAAAACCGTGCCAGCCTGTTTGCGGCAACACAGGCACAAAAAAACCCGGCAC‑ATG‑G‑CCGGGT‑TTCTCGTTCAAGGCCGAATGACTCAGGCCTTGAAGGTCTTGcc < 6:52449/145‑1 (MQ=255) ccAGAGGTTTGATGTTAGCGTGGTATGCGGCCTGAGCAAGCAAAACCGTGCCAGCCTGTTTGCGGCAACACAGGCACAAAAAAACCCGGCAC‑ATG‑G‑CCGGGT‑TTCTCGTTCAAGGCCGAATGACTCAGGCCTTGAAGGTCTTGCCt < 1:408897/146‑1 (MQ=255) cAGAGGTTTGATGTTAGCGTGGTATGCGGCCTGAGCAAGCAAAACCGTGCCAGCCTGTTTGCGGCAACACAGGCACAAAAAAACCCGGCAC‑ATG‑G‑CCGGGT‑TTCTCGTTCAAGGCCGAATGACTCAGGc < 3:99368/129‑1 (MQ=255) cAGAGGTTTGATGTTAGCGTGGTATGCGGCCTGAGCAAGCAAAACCGTGCCAGCCTGTTTGCGGCAACACAGGCACAAAAAAACCCGGCAC‑ATG‑G‑CCGGGT‑TTCTCGTTCAAGGCCGAATGACTCAGGc > 4:99368/1‑129 (MQ=255) agagGTTTGATGTTAGCGTGGTATGCGGCCTGAGCAAGCAAAACCGTGCCAGCCTGTTTGCGGCAACACAGGCACAAAAAAACCCGGCAC‑ATG‑G‑CCGGGT‑TTCTCGTTCAAGGCCGAATGACTCAGGCCTTGAAGGTCTTGCCTTCGaa > 1:239363/1‑149 (MQ=255) gagGTTTGATGTTAGCGTGGTATGCGGCCTGAGCAAGCAAAACCGTGCCAGCCTGTTTGCGGCAACACAGGCACAAAAAAACCCGGCAC‑ATG‑G‑CCGGGT‑TTCTCGTTCAAGGCCGAATGACTCAGGCCTTGAAGGTCTTGCCTTCGAAc > 7:58600/1‑149 (MQ=255) gTTTGATGTTAGCGTGGTATGCGGCCTGAGCAAGCAAAACCGTGCCAGCCTGTTTGCGGCAACACAGGCACAAAAAAACCCGGCAC‑ATG‑G‑CCGGGT‑TTCTCGTTCAAGGCCGAATGACTCAGGCCTTGAAGGTCTTGCCTTCGAACTGc > 1:354713/1‑149 (MQ=255) tGATGTTAGCGTGGTATGCGGCCTGAGCAAGCAAAACCGTGCCAGCCTGTTTGCGGCAACACAGGCACAAAAAAACCCGGCAC‑ATG‑G‑CCGGGT‑TTCTCGTTCAAGGCCGAATGACTCAGGCCTTGAAGGTCTTGCCTTCGAACTGCTc < 4:37088/148‑1 (MQ=255) gATGTTAGCGTGGTATGCGGCCTGAGCAAGCAAAACCGTGCCAGCCTGTTTGCGGCAACACAGGCACAAAAAAACCCGGCAC‑ATG‑G‑CCGGGT‑TTCTCGTTCAAGGCCGAATGACTCAGGCCTTGAAGGTCTTGCCTTCGAACTGCTCgg > 5:235483/1‑149 (MQ=255) aGCGTGGTATGCGGCCTGAGCAAGCAAAACCGTGCCAGCCTGTTTGCGGCAACACAGGCACAAAAAAACCCGGCAC‑ATG‑G‑CCGGGT‑TTCTCGTTCAAGGCCGAATGACTCAGGCCTTGAAGGTCTTGCCTTCGAACTGCTCGGCAACg < 5:222936/148‑1 (MQ=255) cGTGGTATGCGGCCTGAGCAAGCAAAACCGTGCCAGCCTGTTTGCGGCAACACAGGCACAAAAAAACCCGGCAC‑ATG‑G‑CCGGGT‑TTCTCGTTCAAGGCCGAATGACTCAGGCCTTGAAGGTCTTGCCTTCGAACTGCTCGGCAACGAAg < 8:58600/149‑1 (MQ=255) cGTGGTATGCGGCCTGAGCAAGCAAAACCGTGCCAGCCTGTTTGCGGCAACACAGGCACAAAAAAACCCGGCAC‑ATG‑G‑CCGGGT‑TTCTCGTTCAAGGCCGAATGACTCAGGCCTTGAAGGTCTTGCCTTCGAACTGCTCGGCAACGAAg < 2:239363/149‑1 (MQ=255) cGTGGTATGCGGCCTGAGCAAGCAAAACCGTGCCAGCCTGTTTGCGGCAACACAGGCACAAAAAAACCCGGCAC‑ATG‑G‑CCGGGT‑TTCTCGTTCAAGGCCGAATGACTCAGGCCTTGAAGGTCTTGCCTTCGAACTGCTCGGCAACGAAg < 3:235179/149‑1 (MQ=255) agcaagcaAAACCGTGCCAGCCTGTTTGCGGCAACACAGGCACAAAAAAACCCGGCAC‑ATG‑G‑CCGGGT‑TTCTCGTTCAAGGCCGAATGACTCAGGCCTTGAAGGTCTTGCCTTCGAACTGCTCGGc < 1:385811/126‑1 (MQ=255) agcaagcaAAACCGTGCCAGCCTGTTTGCGGCAACACAGGCACAAAAAAACCCGGCAC‑ATG‑G‑CCGGGT‑TTCTCGTTCAAGGCCGAATGACTCAGGCCTTGAAGGTCTTGCCTTCGAACTGCTCGGc > 2:385811/1‑126 (MQ=255) gcaagcaaAACCGTGCCAGCCTGTTTGCGGCAACACAGGCACAAAAAAACCCGGCAC‑ATG‑G‑CCGGGT‑TTCTCGTTCAAGGCCGAATGACTCAGGCCTTGAAGGTCTTGCCTTCGAACTGCTCGGCAACGAAGGCCCAGTTGACCAGGt < 3:75844/148‑1 (MQ=255) caagcaaAACCGTGCCAGCCTGTTTGCGGCAACACAGGCACAAAAAAACCCGGCAC‑ATG‑G‑CCGGGT‑TTCTCGTTCAAGGCCGAATGACTCAGGCCTTGAAGGTCTTGCCTTCGAACTGCTCGGCAACg < 1:228366/128‑1 (MQ=255) caagcaaAACCGTGCCAGCCTGTTTGCGGCAACACAGGCACAAAAAAACCCGGCAC‑ATG‑G‑CCGGGT‑TTCTCGTTCAAGGCCGAATGACTCAGGCCTTGAAGGTCTTGCCTTCGAACTGCTCGGCAACg > 2:228366/1‑128 (MQ=255) agcaaAACCGTGCCAGCCTGTTTGCGGCAACACAGGCACAAAAAAACCCGGCAC‑ATG‑G‑CCGGGT‑TTCTCGTTCAAGGCCGAATGACTCAGGCCTTGAAGGTc < 1:355719/102‑1 (MQ=255) agcaaAACCGTGCCAGCCTGTTTGCGGCAACACAGGCACAAAAAAACCCGGCAC‑ATG‑G‑CCGGGT‑TTCTCGTTCAAGGCCGAATGACTCAGGCCTTGAAGGTc > 2:355719/1‑102 (MQ=255) gcaaAACCGTGCCAGCCTGTTTGCGGCAACACAGGCACAAAAAAACCCGGCAC‑ATG‑GCCCGGGT‑TTCTCGTTCAAGGCCGATTGACTCAGGCCTTGAAGGTc < 1:291955/102‑1 (MQ=255) gcaaAACCGTGCCAGCCTGTTTGCGGCAACACAGGCACAAAAAAACCCGGCAC‑ATG‑G‑CCGGGT‑TTCTCGTTCAAGGCCGATTGACTCAGGCCTTGAAGGTc > 2:291955/1‑101 (MQ=255) aaaaCCGTGCCAGCCTGTTTGCGGCAACACAGGCACAAAAAAACCCGGCAC‑ATG‑G‑CCGGGT‑TTCTCGTTCAAGGCCGAATGACTCAGGCCTTGAAGGTCTTGCCTTCGAACTGCTCGGCAACGAAGGCCCAGTTGACCAGGTTCCAGaa < 1:356543/149‑1 (MQ=255) aCCGTGCCAGCCTGTTTGCGGCAACACAGGCACAAAAAAACCCGGCAC‑ATG‑G‑CCGGGT‑TTCTCGTTCAAGGCCGAATGACTCAGGCCTTGAAGGTCTTGCCTTCGAACTGCTCGGCAACGAAGGCCCAGTTGACCAGGTTCCAGAACGc > 4:111742/1‑149 (MQ=255) ccGTGCCAGCCTGTTTGCGGCAACACAGGCACAAAAAAACCCGGCAC‑ATG‑G‑CCGGGT‑TTCTCGTTCAAGGCCGAATGACTCAGGCCTTGAAGGTCTTGCCTTCGAACTGCTCGGCAACGAAGGCCCAGTTGACCAGGTTCCAGAACGcc > 1:364123/1‑149 (MQ=255) cGTGCCAGCCTGTTTGCGGCAACACAGGCACAAAAAAACCCGGCAC‑ATG‑G‑CCGGGT‑TTCTCGTTCAAGGCCGAATGACTCAGGCCTTGAAGGTCTTGCCTTCGAACTGCTCGGCAACGAAGGCCCAGTTGACCAGGTTCCAGAACGCCt < 7:208841/149‑1 (MQ=255) aGCCTGTTTGCGGCAACACAGGCACAAAAAAACCCGGCAC‑ATG‑G‑CCGGGT‑TTCTCGTTCAAGGCCGAATGACTCAGGCCTTGAAGGTCTTGCCTTCg < 4:22005/97‑1 (MQ=255) aGCCTGTTTGCGGCAACACAGGCACAAAAAAACCCGGCAC‑ATG‑G‑CCGGGT‑TTCTCGTTCAAGGCCGAATGACTCAGGCCTTGAAGGTCTTGCCTTCg > 3:22005/1‑97 (MQ=255) aGCCTGTTTGCGGCAACACAGGCACAAAAAAACCCGGCAC‑ATG‑G‑CCGGGT‑TTCTCGTTCAAGGCCGAATGACTCAGGCCTTGAAGGTCTTGCCTTCGAACTGCTCGGCAACGAAGGCCCAGTTGACCAGGTTCCAGAACGCCTCGACg > 3:72683/1‑148 (MQ=255) gCCTGTTTGCGGCAACACAGGCACAAAAAAACCCGGCAC‑ATG‑G‑CCGGGT‑TTCTCGTTCAAGGCCGAATGACTCAGGCCTTGAAGGTCTTGCCTTCGAACTGCTCGGCAACGAAGGCCCAGTTGACCAGGTTCCAGAACGCCTCGACGTa < 5:291397/149‑1 (MQ=255) cTGTTTGCGGCAACACAGGCACAAAAAAACCCGGCAC‑ATG‑G‑CCGGGT‑TTCTCGTTCAAGGCCGAATGACTCAGGCCTTGAAGGTCTTGCCTTCGAACTGCTCGGCAACGAAGGCCCAGTTGACCAGGTTCCAGAACGCCTCGACGTACt > 1:184475/1‑149 (MQ=255) tttGCGGCAACACAGGCACAAAAAAACCCGGCAC‑ATG‑G‑CCGGGT‑TTCTCGTTCAAGGCCGAATGACTCAGGCCTTGAAGGTCTTGCCTTCGAACTGCTCGGCAACGAAGGCCCAGTTGACCAGGTTCCAGAACGCCTCGACGTACTTc < 5:207718/148‑1 (MQ=255) cacaGGCACAAAAAAACCCGGCAC‑ATG‑G‑CCGGGT‑TTATATTTCAATGACTAAATAAACATGCAATCAAGATCATTAAAAAAAAATGCTCGGCAACGAAGGCCCAGTTGACCAGGTTCCAGAACGCCTCGACGTACTTCGGACGCAGGtt > 2:246690/1‑149 (MQ=255) caGGCACAAAAAAACCCGGCAC‑ATG‑G‑CCGGGT‑TTCTCGTTCAAGGCCGAATGACTCAGGCCTTGAAGGTCTTGCCTTCGAACTGCTCGGCAACGAAGGCCCAGTTGACCAGGTTCCAGAACGCCTCGACGTACTTCGGACGCAGGTTGc < 2:354713/149‑1 (MQ=255) aGGCACAAAAAAAGCGGGCAC‑ATG‑G‑CCGGGT‑TTCTCGTTCAAGGCCGAATGACTCAGGCCTTGAAGGTCTTGCCTTCGAACTGCTCGGCAACGAAGGCCCAGTTGACCAGGTTCCAGAACGCCTCGACGTACTTCGGACGCAGGTTGCg < 8:47239/149‑1 (MQ=255) aGGCACAAAAAAACCCGGCAC‑ATG‑G‑CCGGGT‑TTCTCGTTCAAGGCCGAATGACTCAGGCCTTGAAGGTCTTGCCTTCGAACTGCTCGGCAACGAAg > 8:287671/1‑96 (MQ=255) aGGCACAAAAAAACCCGGCAC‑ATG‑G‑CCGGGT‑TTCTCGTTCAAGGCCGAATGACTCAGGCCTTGAAGGTCTTGCCTTCGAACTGCTCGGCAACGAAg < 7:287671/96‑1 (MQ=255) ggaacaAAAAAACCCGGCAC‑ATG‑G‑ACGGGT‑TTCTCGTTCAAGGCCGAATGACTCAGGCCTTGAAGGTCTTGCCTTCGAACTGCTCGGCAACGAAGGCCCAGTTGACCAGGTTCCAGAACGCCTCGACGTACTTCGTACGCAGGTTGCgg < 6:174873/146‑1 (MQ=255) gCACAAAAAAACCCGGCAC‑ATG‑G‑CCGGGT‑TTCTCGTTCAAGGCCGAATGACTCAGGCCTTGAAGGTCTTGCCTTCGAACTGCTCGGCAACGAAGGCCCAGTTGACCAGGTTCCAGAACGCCTCGACGTACTTCGGACGc > 7:331483/1‑139 (MQ=255) gCACAAAAAAACCCGGCAC‑ATG‑G‑CCGGGT‑TTCTCGTTCAAGGCCGAATGACTCAGGCCTTGAAGGTCTTGCCTTCGAACTGCTCGGCAACGAAGGCCCAGTTGACCAGGTTCCAGAACGCCTCGACGTACTTCGGACGc < 8:331483/139‑1 (MQ=255) caAAAAAACCCGGCAC‑ATG‑G‑CCGGGT‑TTCTCGTTCAAGGCCGAATGACTCAGGCCTTGAAGGTCTTGCCTTCGAACTGCTCGGCAACGAAGGCCCAGTTGACCAGGTTCCAGAACGCCTCGACGTACTTCGGACGCAGGTTGCGGTAGt < 3:111742/149‑1 (MQ=255) aaaaaaaCCCGGCAC‑ATG‑G‑CCGGGT‑TTCTCGTTCAAGGCCGAATGACTCAGGCCTTGAAGGTCTTGCCTTCGAACTGCTCGGCAACGAAGGCCCAGTTGACCAGGTTCCAGAACGCCTCGACGTACTTCGGACGCAGGTTGCGGTAGTc > 6:142397/1‑149 (MQ=255) aaaaaaCCCGGCAC‑ATG‑G‑CCGGGT‑TTCTCGTTCAAGGCCGAATGACTCAGGCCTTGAAGGTCTTGCCTTCGAACTGCTCGGCAACGAAGGCCCAGTTGACCAGGTTCCAGAACGCCTCGACGTAc < 5:77347/125‑1 (MQ=255) aaaaaaCCCGGCAC‑ATG‑G‑CCGGGT‑TTCTCGTTCAAGGCCGAATGACTCAGGCCTTGAAGGTCTTGCCTTCGAACTGCTCGGCAACGAAGGCCCAGTTGACCAGGTTCCAGAACGCCTCGACGTAc > 6:77347/1‑125 (MQ=255) aaaaaCCCGGCAC‑ATG‑G‑CCGGGT‑TTCTCGTTCAAGGCCGAATGACTCAGGCCTTGAAGGTCTTGCCTTCGAACTGCTCGGCAACGAAGGCCCAGtt < 8:73827/96‑1 (MQ=255) aaaaaCCCGGCAC‑ATG‑G‑CCGGGT‑TTCTCGTTCAAGGCCGAATGACTCAGGCCTTGAAGGTCTTGCCTTCGAACTGCTCGGCAACGAAGGCCCAGtt > 7:73827/1‑96 (MQ=255) gaaaCCCGGC‑C‑ATGTG‑CCGGGT‑TTCTCGTTCAAGGCCGTATGACTCAGGCCTTGAAGGTCTTGCCTTCGAACTGCTCGGCAACGAAGGCCCAGTTGACCAGGTTCCAGAACGCCTCGACGTACTTCGGACGCa < 5:173771/132‑1 (MQ=255) gaaaCCCGGC‑C‑ATGTG‑CCGGGT‑TTCTCGTTCAAGGCCGTATGACTCAGGCCTTGAAGGTCTTGCCTTCGAACTGCTCGGCAACGAAGGCCCAGTTGACCAGGTTCCAGAACGCCTCGACGTACTTCGGACGCa > 6:173771/2‑133 (MQ=255) aaaCCCGGCAC‑ATG‑G‑CCGGGT‑TTCTCGTTCAAGGCCGAATGACTCAGGCCTTGAAGGTCTTGCCTTCGAACTGCTCGGCAACGAAGGCCCAGTTGACCAGGTTCCAGAACGCCTCGACGTACTTCGGACGCAGGTTGCGGTAGTCGATg > 8:257145/1‑149 (MQ=255) aaaCCCGGCAC‑ATG‑G‑CCGGGT‑TTCTCGTTCAAGGCCGAATGACTCAGGCCTTGAAGGTCTTGCCTTCGAACTGCTCGGCAACGAAGGCCCAGTTGACCAGGTTCCAGAACGCCTCGACGTACTTCGGACGCAGGTTGCGGTAGTCGATg < 6:235483/149‑1 (MQ=255) cccGGCAC‑ATG‑G‑CCGGGT‑TTCTCGTTCAAGGCCGAATGACTCAGGCCTTGAAGGTCTTGCCTTCGAACTGCTCGGCAACGAAGGCCCAGTTGACCAGGTTCCAGAACGCCTCGACGTACTTCGGACGCAGGTTGCGGTAGTCGATgtag > 3:250766/1‑149 (MQ=255) cac‑aTG‑G‑CCGGGT‑TTCTCGTTCAAGGCCGAATGACTCAGGCCTTGAAGGTCTTGCCTTCGAACTGCTCGGCAACGAAGGCCCAGTTGACCAGGTTCCAGAACGCCTCGACGTACTTCGGACGCAGGTTGCGGTAGTCGATGTAGTAGGc < 2:184475/149‑1 (MQ=255) | ATTAGCAGTGTATCGGTTGCCTGACCCCGCAACTTGAATGCGCTGTATCAATCTTCCAGAGGTTTGATGTTAGCGTGGTATGCGGCCTGAGCAAGCAAAACCGTGCCAGCCTGTTTGCGGCAACACAGGCACAAAAAAACCCGGCAC‑ATG‑G‑CCGGGT‑TTCTCGTTCAAGGCCGAATGACTCAGGCCTTGAAGGTCTTGCCTTCGAACTGCTCGGCAACGAAGGCCCAGTTGACCAGGTTCCAGAACGCCTCGACGTACTTCGGACGCAGGTTGCGGTAGTCGATGTAGTAGGC > NC_002947/1058112‑1058404 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |